# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 267 Mg_chelatase PF01078.16 207 0.00025 13.6 0.0 1 1 2.8e-06 0.00036 13.0 0.0 25 44 36 55 27 69 0.84 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_54 - 540 Eno-Rase_NADH_b PF12242.3 78 0.00091 12.3 0.1 1 1 1.8e-05 0.0024 11.0 0.1 40 77 8 46 3 47 0.76 # 69874 # 71493 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.690 1_28 - 267 NB-ARC PF00931.17 287 0.0015 10.7 0.0 1 1 1.7e-05 0.0023 10.1 0.0 23 39 37 53 29 64 0.85 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 2_5 - 351 AAA_22 PF13401.1 131 8.2e-11 35.5 0.0 1 1 5.2e-12 3.4e-10 33.5 0.0 37 123 135 226 109 230 0.85 # 5966 # 7018 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.689 1_21 - 723 AAA_22 PF13401.1 131 0.00061 13.3 0.1 1 1 2.4e-05 0.0016 11.9 0.1 3 25 436 458 434 604 0.93 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_28 - 267 AAA_17 PF13207.1 121 9.9e-11 35.8 0.0 1 1 1.3e-12 1.7e-10 35.1 0.0 2 112 36 154 36 180 0.69 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_21 - 723 AAA_21 PF13304.1 303 5.5e-08 26.3 0.0 1 2 5.4e-07 7.2e-05 16.1 0.0 3 23 441 461 439 482 0.84 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_21 - 723 AAA_21 PF13304.1 303 5.5e-08 26.3 0.0 2 2 0.00015 0.019 8.1 0.0 235 297 550 608 546 610 0.94 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_21 - 723 Miro PF08477.8 119 0.0017 12.2 0.0 1 1 2.4e-05 0.0032 11.3 0.0 2 22 440 460 439 475 0.88 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_54 - 540 ADH_zinc_N PF00107.21 130 0.0077 9.1 3.4 1 1 0.004 0.53 3.2 3.6 1 89 18 145 18 156 0.59 # 69874 # 71493 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.690 1_28 - 267 Arf PF00025.16 175 0.0011 11.5 0.0 1 1 1.3e-05 0.0017 10.9 0.0 11 44 30 63 25 67 0.87 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_28 - 267 SKI PF01202.17 158 0.00023 14.3 0.0 1 1 5.6e-06 0.00074 12.7 0.0 1 122 42 170 42 179 0.64 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_28 - 267 Zeta_toxin PF06414.7 201 3.6e-15 48.9 0.0 1 1 3.7e-17 4.9e-15 48.4 0.0 10 147 27 159 17 177 0.88 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_21 - 723 SMC_N PF02463.14 220 2.1e-07 23.7 0.0 1 2 0.00011 0.014 7.8 0.0 25 42 438 455 429 459 0.86 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_21 - 723 SMC_N PF02463.14 220 2.1e-07 23.7 0.0 2 2 2.1e-06 0.00027 13.5 0.0 136 211 551 622 514 630 0.85 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_28 - 267 AAA_16 PF13191.1 185 0.00018 14.8 0.0 1 1 4.6e-06 0.0003 14.1 0.0 21 81 30 104 25 190 0.64 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_21 - 723 AAA_16 PF13191.1 185 0.08 6.2 17.1 1 2 0.025 1.6 1.9 0.3 47 168 281 428 263 436 0.47 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_21 - 723 AAA_16 PF13191.1 185 0.08 6.2 17.1 2 2 3.5e-06 0.00023 14.5 1.2 20 45 433 458 424 624 0.82 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_21 - 723 AAA_23 PF13476.1 202 1.7e-05 18.5 0.0 1 1 2e-07 2.6e-05 17.9 0.0 13 39 430 457 426 466 0.82 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_28 - 267 AAA_18 PF13238.1 129 2.4e-12 40.6 0.0 1 1 3.2e-14 4.3e-12 39.8 0.0 1 116 36 157 36 169 0.79 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_54 - 540 adh_short PF00106.20 167 3.1e-29 95.3 8.8 1 1 3.8e-31 5.1e-29 94.6 8.8 1 165 8 177 8 179 0.91 # 69874 # 71493 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.690 1_47 - 959 AAA_13 PF13166.1 712 0.0002 13.2 0.2 1 1 5.8e-06 0.00077 11.2 0.0 284 431 155 313 127 316 0.53 # 59898 # 62774 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.657 2_34 - 2962 KaiC PF06745.8 227 0.00091 11.7 0.0 1 1 1.1e-05 0.0014 11.0 0.0 3 77 205 280 203 367 0.85 # 44117 # 53002 # -1 # ID=2_34;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.734 1_21 - 723 AAA_29 PF13555.1 62 4.3e-06 19.5 0.0 1 1 7.6e-08 1e-05 18.4 0.0 16 50 431 464 426 470 0.76 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_28 - 267 AAA PF00004.24 132 0.00017 15.1 0.0 1 1 2.1e-06 0.00027 14.4 0.0 1 20 36 55 36 70 0.89 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_54 - 540 KR PF08659.5 181 8.8e-12 38.3 4.8 1 1 1.1e-13 1.5e-11 37.6 4.8 3 157 10 168 9 194 0.81 # 69874 # 71493 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.690 2_5 - 351 TniB PF05621.6 302 6.1e-08 25.0 0.2 1 1 2.8e-09 3.7e-07 22.4 0.2 93 284 133 330 117 344 0.77 # 5966 # 7018 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.689 1_21 - 723 DUF258 PF03193.11 161 1e-05 18.1 0.0 1 1 1.4e-07 1.8e-05 17.3 0.0 23 67 424 469 411 472 0.87 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_28 - 267 AAA_33 PF13671.1 143 7.6e-22 71.0 0.0 1 1 7.9e-24 1e-21 70.6 0.0 2 140 36 178 36 181 0.82 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_28 - 267 KTI12 PF08433.5 270 0.00076 12.0 0.0 1 1 8.4e-06 0.0011 11.5 0.0 4 24 36 56 35 237 0.78 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 2_34 - 2962 DnaB_C PF03796.10 259 2.7e-90 295.0 0.0 1 1 2.6e-92 3.5e-90 294.6 0.0 1 257 202 458 202 460 0.98 # 44117 # 53002 # -1 # ID=2_34;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.734 1_21 - 723 ABC_tran PF00005.22 137 7.5e-30 97.3 0.0 1 1 8.9e-32 1.2e-29 96.7 0.0 1 137 427 580 427 580 0.88 # 22813 # 24981 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.726 1_28 - 267 AAA_19 PF13245.1 76 0.00033 13.7 0.2 1 1 6.9e-06 0.0009 12.3 0.0 4 31 28 53 27 72 0.80 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_54 - 540 adh_short_C2 PF13561.1 241 8.7e-32 104.0 0.2 1 1 8.7e-34 1.2e-31 103.6 0.2 5 241 16 250 14 250 0.91 # 69874 # 71493 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.690 1_28 - 267 Viral_helicase1 PF01443.13 234 0.0013 11.5 0.0 1 1 1.4e-05 0.0018 11.1 0.0 1 35 36 68 36 86 0.78 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 2_34 - 2962 TIP49 PF06068.8 398 0.0003 12.8 0.0 1 1 3.3e-06 0.00044 12.3 0.0 43 112 213 278 203 294 0.82 # 44117 # 53002 # -1 # ID=2_34;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.734 1_54 - 540 Epimerase PF01370.16 236 6.2e-05 15.8 0.9 1 1 7.1e-07 9.4e-05 15.2 0.9 1 101 10 123 10 148 0.69 # 69874 # 71493 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.690 1_28 - 267 CPT PF07931.7 174 2.8e-06 20.3 0.1 1 1 3.7e-07 4.9e-05 16.3 0.1 4 131 36 154 35 158 0.74 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_28 - 267 AAA_24 PF13479.1 213 0.0014 11.5 0.0 1 1 1.3e-05 0.0017 11.3 0.0 2 25 32 55 31 111 0.91 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 2_34 - 2962 AAA_25 PF13481.1 194 7.2e-22 71.0 0.1 1 1 1.3e-23 1.7e-21 69.8 0.1 13 191 201 382 190 385 0.88 # 44117 # 53002 # -1 # ID=2_34;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.734 1_28 - 267 AAA_28 PF13521.1 163 9.8e-06 18.9 0.0 1 1 1.1e-07 1.4e-05 18.4 0.0 2 47 36 84 35 129 0.76 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_28 - 267 APS_kinase PF01583.15 157 0.00073 12.5 0.0 1 1 9.2e-06 0.0012 11.8 0.0 2 24 33 55 32 62 0.88 # 30956 # 31756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/df16a098-bf1e-42f6-af5b-59654c0863f4 # Target file: checkm_output/bins/pEU372836.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pEU372836.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/df16a098-bf1e-42f6-af5b-59654c0863f4 checkm_output/bins/pEU372836.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:24 2020 # [ok]