# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 646 DEAD_2 PF06733.10 174 0.00041 12.2 0.2 1 2 0.079 5.5 -1.3 0.0 3 22 149 168 146 179 0.75 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_22 - 646 DEAD_2 PF06733.10 174 0.00041 12.2 0.2 2 2 3.2e-05 0.0022 9.8 0.1 144 165 506 527 493 535 0.81 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_53 - 395 DUF87 PF01935.12 229 8.6e-05 14.8 0.5 1 2 5.2e-05 0.0036 9.5 0.1 24 74 145 195 129 212 0.76 # 45018 # 46202 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.350 1_53 - 395 DUF87 PF01935.12 229 8.6e-05 14.8 0.5 2 2 0.0025 0.17 4.0 0.0 163 212 205 252 184 269 0.83 # 45018 # 46202 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.350 1_22 - 646 AAA_22 PF13401.1 131 2.1e-07 23.6 3.5 1 2 3e-05 0.0021 10.6 0.0 3 23 251 271 248 291 0.89 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_22 - 646 AAA_22 PF13401.1 131 2.1e-07 23.6 3.5 2 2 6.3e-06 0.00043 12.8 0.1 20 113 432 538 430 558 0.68 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_53 - 395 Arch_ATPase PF01637.13 234 1.5e-05 17.1 0.2 1 1 5.1e-07 3.5e-05 15.9 0.0 25 128 149 252 138 278 0.60 # 45018 # 46202 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.350 1_22 - 646 AAA_16 PF13191.1 185 0.00045 12.6 0.3 1 1 2.4e-05 0.0016 10.8 0.3 27 85 255 306 240 547 0.72 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_53 - 395 AAA_14 PF13173.1 128 0.00034 12.9 0.1 1 1 2e-05 0.0014 11.0 0.1 5 56 147 201 143 275 0.78 # 45018 # 46202 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.350 1_22 - 646 AAA_29 PF13555.1 62 6.8e-05 14.8 0.0 1 1 2.2e-06 0.00015 13.7 0.0 23 40 252 269 241 270 0.79 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_23 - 270 RNA_pol_Rpb1_5 PF04998.12 277 0.037 5.6 7.0 1 1 0.00081 0.056 5.0 7.0 101 198 29 138 26 259 0.75 # 20104 # 20913 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.323 1_22 - 646 DUF258 PF03193.11 161 0.00017 13.2 0.0 1 1 7.1e-06 0.00049 11.7 0.0 38 54 255 271 238 303 0.87 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_27 - 852 TraG-D_C PF12696.2 128 4.6e-36 115.9 0.1 1 1 3.3e-37 1.2e-35 114.6 0.1 2 127 525 641 524 642 0.87 # 24154 # 26709 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.355 1_35 - 192 TraG-D_C PF12696.2 128 4.4e-08 25.4 0.1 1 1 3.4e-09 1.2e-07 24.1 0.1 12 63 139 190 137 191 0.95 # 31607 # 32182 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_53 - 395 FtsK_SpoIIIE PF01580.13 205 1.8e-24 78.7 0.1 1 1 6.2e-26 4.2e-24 77.5 0.1 14 203 121 296 111 298 0.78 # 45018 # 46202 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.350 1_22 - 646 ABC_tran PF00005.22 137 0.00085 12.0 4.1 1 1 8.9e-06 0.00061 12.5 1.2 15 29 256 270 250 420 0.91 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_50 - 236 dTMP_synthase PF02593.9 218 0.00054 11.7 0.0 1 1 1.2e-05 0.00085 11.1 0.0 12 86 51 146 43 165 0.77 # 43565 # 44272 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.299 1_22 - 646 AAA_10 PF12846.2 304 2.1e-65 213.5 1.2 1 1 1.6e-66 3.6e-65 212.7 1.2 1 300 252 598 252 604 0.90 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_53 - 395 AAA_10 PF12846.2 304 1.5e-08 26.8 0.0 1 2 3.9e-06 9.1e-05 14.3 0.0 2 47 145 193 144 207 0.88 # 45018 # 46202 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.350 1_53 - 395 AAA_10 PF12846.2 304 1.5e-08 26.8 0.0 2 2 6.1e-05 0.0014 10.4 0.0 200 264 212 297 199 328 0.75 # 45018 # 46202 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.350 1_27 - 852 AAA_10 PF12846.2 304 1.8e-05 16.6 0.0 1 2 0.081 1.9 0.2 0.0 3 91 154 250 152 378 0.66 # 24154 # 26709 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.355 1_27 - 852 AAA_10 PF12846.2 304 1.8e-05 16.6 0.0 2 2 5.9e-06 0.00013 13.8 0.0 196 301 500 603 466 605 0.77 # 24154 # 26709 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.355 1_22 - 646 ResIII PF04851.10 184 0.00017 13.9 2.4 1 1 2.8e-06 0.00019 13.6 0.3 88 167 443 529 419 581 0.66 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_27 - 852 TrwB_AAD_bind PF10412.4 386 4.7e-18 57.3 0.0 1 2 0.0021 0.071 4.0 0.0 18 127 155 282 148 306 0.67 # 24154 # 26709 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.355 1_27 - 852 TrwB_AAD_bind PF10412.4 386 4.7e-18 57.3 0.0 2 2 1.2e-17 4.1e-16 50.9 0.0 238 369 518 644 490 657 0.82 # 24154 # 26709 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.355 1_35 - 192 TrwB_AAD_bind PF10412.4 386 3.8e-05 14.8 0.1 1 2 0.023 0.8 0.5 0.0 38 63 41 67 33 70 0.71 # 31607 # 32182 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_35 - 192 TrwB_AAD_bind PF10412.4 386 3.8e-05 14.8 0.1 2 2 7.8e-06 0.00027 12.0 0.0 255 306 139 190 128 191 0.92 # 31607 # 32182 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_27 - 852 T4SS-DNA_transf PF02534.9 469 2e-46 150.8 1.7 1 2 5.7e-21 2e-19 61.8 0.0 15 263 113 388 99 401 0.79 # 24154 # 26709 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.355 1_27 - 852 T4SS-DNA_transf PF02534.9 469 2e-46 150.8 1.7 2 2 6e-29 2.1e-27 88.1 0.4 250 432 467 648 418 662 0.81 # 24154 # 26709 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.355 1_35 - 192 T4SS-DNA_transf PF02534.9 469 9e-07 20.1 0.4 1 2 0.00042 0.015 6.2 0.0 70 103 47 80 25 116 0.76 # 31607 # 32182 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_35 - 192 T4SS-DNA_transf PF02534.9 469 9e-07 20.1 0.4 2 2 6.5e-06 0.00022 12.2 0.1 318 362 142 186 138 191 0.90 # 31607 # 32182 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_22 - 646 SNF2_N PF00176.18 299 4.1e-05 14.8 0.1 1 2 0.08 5.5 -2.0 0.0 109 132 75 94 58 114 0.71 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_22 - 646 SNF2_N PF00176.18 299 4.1e-05 14.8 0.1 2 2 4e-06 0.00027 12.1 0.0 124 161 497 534 453 543 0.80 # 18151 # 20088 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/dc7af134-052e-41f5-9b72-9bb6740238e4 # Target file: checkm_output/bins/pEU362919.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pEU362919.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dc7af134-052e-41f5-9b72-9bb6740238e4 checkm_output/bins/pEU362919.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:23 2020 # [ok]