# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 124 Thymidylate_kin PF02223.12 186 2.7e-26 81.2 0.0 1 1 8.4e-27 2.9e-26 81.1 0.0 72 186 4 113 1 113 0.93 # 3 # 374 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.309 1_7 - 76 Thymidylate_kin PF02223.12 186 1.8e-13 39.4 0.0 1 1 5.4e-14 1.9e-13 39.3 0.0 1 49 18 67 18 76 0.80 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_7 - 76 AAA_22 PF13401.1 131 2.3e-05 13.7 0.0 1 1 3.4e-06 2.4e-05 13.7 0.0 4 31 13 40 8 66 0.81 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_7 - 76 ATP_bind_1 PF03029.12 238 4.1e-05 12.3 0.0 1 1 6.3e-06 4.4e-05 12.2 0.0 3 27 20 44 18 64 0.92 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_7 - 76 SRP54 PF00448.17 196 6.1e-07 18.2 0.0 1 1 1e-07 7.1e-07 17.9 0.0 3 35 15 47 13 57 0.82 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_7 - 76 MobB PF03205.9 140 1.2e-05 14.2 0.0 1 1 1.9e-06 1.4e-05 14.0 0.0 3 36 16 49 14 62 0.91 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_7 - 76 Arf PF00025.16 175 2.8e-06 15.8 0.0 1 1 4.4e-07 3.1e-06 15.7 0.0 11 36 10 35 2 61 0.72 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_7 - 76 T2SE PF00437.15 272 8.2e-06 13.9 0.0 1 1 1.3e-06 8.8e-06 13.8 0.0 127 168 12 53 5 66 0.84 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_1 - 124 AAA_18 PF13238.1 129 4.1e-06 16.3 0.2 1 2 2.6e-06 1.8e-05 14.2 0.1 95 123 36 78 7 82 0.76 # 3 # 374 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.309 1_1 - 124 AAA_18 PF13238.1 129 4.1e-06 16.3 0.2 2 2 0.018 0.12 1.8 0.1 48 91 77 113 70 120 0.56 # 3 # 374 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.309 1_7 - 76 AAA_14 PF13173.1 128 4.2e-05 12.6 0.1 1 1 7.3e-06 5.1e-05 12.4 0.1 3 55 14 65 12 75 0.69 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_7 - 76 AAA_33 PF13671.1 143 1.4e-06 17.4 0.0 1 1 7.3e-07 2.5e-06 16.6 0.0 1 22 15 36 15 69 0.74 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_1 - 124 AAA_33 PF13671.1 143 1.7e-06 17.1 0.0 1 1 6.8e-07 2.4e-06 16.7 0.0 90 140 39 89 21 91 0.87 # 3 # 374 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.309 1_7 - 76 KTI12 PF08433.5 270 5.7e-06 14.8 0.0 1 1 8.8e-07 6.2e-06 14.7 0.0 3 36 15 48 13 66 0.87 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_7 - 76 AAA_30 PF13604.1 196 6.3e-05 11.7 0.0 1 1 1.1e-05 7.5e-05 11.5 0.0 17 50 12 45 4 52 0.88 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_1 - 124 dNK PF01712.14 146 1.3e-07 20.8 0.0 1 1 2.7e-07 1.9e-06 17.0 0.0 61 92 41 71 2 103 0.79 # 3 # 374 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.309 1_7 - 76 ABC_tran PF00005.22 137 5.6e-05 12.6 0.0 1 1 8.4e-06 5.9e-05 12.6 0.0 14 52 16 55 9 69 0.79 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 1_7 - 76 PPK2 PF03976.9 229 4.5e-09 25.0 0.0 1 1 6.4e-10 4.5e-09 25.0 0.0 26 76 8 58 1 71 0.84 # 5813 # 6040 # 1 # ID=1_7;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.281 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/dba7423a-819a-46ce-a9fb-9a2a1001439f # Target file: checkm_output/bins/pEU289287.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pEU289287.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dba7423a-819a-46ce-a9fb-9a2a1001439f checkm_output/bins/pEU289287.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:17 2020 # [ok]