# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 190 ubiquitin PF00240.18 69 2.9e-05 12.5 9.0 1 2 8.1e-06 4.9e-05 11.7 3.4 8 60 83 130 73 138 0.84 # 2815 # 3384 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=14bp;gc_cont=0.311 1_5 - 190 ubiquitin PF00240.18 69 2.9e-05 12.5 9.0 2 2 0.0036 0.022 3.2 0.3 14 30 150 166 135 177 0.80 # 2815 # 3384 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=14bp;gc_cont=0.311 1_3 - 106 TIGR00855 TIGR00855 125 1.8e-07 20.3 0.3 1 1 3.6e-08 2.2e-07 20.1 0.3 53 97 60 103 42 105 0.72 # 1948 # 2265 # -1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=5bp;gc_cont=0.245 1_5 - 190 AAA_23 PF13476.1 202 0.0044 6.3 31.2 1 1 0.001 0.0061 5.8 31.2 87 202 38 169 3 178 0.51 # 2815 # 3384 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=14bp;gc_cont=0.311 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/addfa20e-a7d3-489d-a1a2-46e1020e3c64 # Target file: checkm_output/bins/pDQ917780.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ917780.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/addfa20e-a7d3-489d-a1a2-46e1020e3c64 checkm_output/bins/pDQ917780.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:14 2020 # [ok]