# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 294 AAA_22 PF13401.1 131 3.7e-05 13.3 0.1 1 1 2.3e-05 0.00018 11.0 0.1 4 113 46 178 43 193 0.64 # 3416 # 4297 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_7 - 72 Ub-Mut7C PF14451.1 81 4e-05 12.5 0.1 1 2 9e-05 0.00072 8.5 0.0 10 37 10 37 3 41 0.89 # 4880 # 5095 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_7 - 72 Ub-Mut7C PF14451.1 81 4e-05 12.5 0.1 2 2 0.0058 0.047 2.7 0.0 20 41 40 61 37 62 0.82 # 4880 # 5095 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_5 - 294 FtsK_SpoIIIE PF01580.13 205 2.4e-16 49.1 0.0 1 1 2.9e-16 2.3e-15 45.9 0.0 23 204 31 206 20 207 0.84 # 3416 # 4297 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_5 - 294 AAA_19 PF13245.1 76 5.9e-06 15.4 0.0 1 1 2.7e-06 2.2e-05 13.6 0.1 9 35 46 71 39 95 0.76 # 3416 # 4297 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_5 - 294 AAA_10 PF12846.2 304 2.5e-12 36.1 0.1 1 2 4.2e-06 3.3e-05 12.7 0.5 4 39 49 86 46 105 0.85 # 3416 # 4297 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_5 - 294 AAA_10 PF12846.2 304 2.5e-12 36.1 0.1 2 2 1.2e-08 9.3e-08 21.1 0.0 203 295 125 235 97 244 0.83 # 3416 # 4297 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_5 - 294 Zot PF05707.7 193 3.5e-06 15.9 0.1 1 2 0.0021 0.016 3.9 0.1 4 17 50 63 48 84 0.82 # 3416 # 4297 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_5 - 294 Zot PF05707.7 193 3.5e-06 15.9 0.1 2 2 2.6e-05 0.00021 10.1 0.0 68 137 135 218 91 228 0.66 # 3416 # 4297 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_5 - 294 DUF2075 PF09848.4 352 1.9e-07 19.6 0.0 1 1 2.9e-08 2.3e-07 19.3 0.0 4 97 49 158 46 185 0.78 # 3416 # 4297 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_5 - 294 DEAD PF00270.24 169 5.5e-05 12.0 0.1 1 2 2.1e-05 0.00017 10.5 0.0 11 41 42 73 37 150 0.82 # 3416 # 4297 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_5 - 294 DEAD PF00270.24 169 5.5e-05 12.0 0.1 2 2 0.071 0.57 -1.0 0.0 120 133 145 158 131 190 0.77 # 3416 # 4297 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_3 - 174 TIGR00344 TIGR00344 847 8e-06 13.2 1.7 1 1 1.2e-06 9.6e-06 13.0 1.7 704 798 64 162 42 170 0.79 # 1130 # 1651 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.579 1_5 - 294 AAA_25 PF13481.1 194 2.6e-05 13.0 0.2 1 1 6.1e-05 0.00049 8.9 0.2 36 177 49 178 36 190 0.62 # 3416 # 4297 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cc15b04e-07b4-4df2-9208-763bca1d95ad # Target file: checkm_output/bins/pDQ497626.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ497626.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cc15b04e-07b4-4df2-9208-763bca1d95ad checkm_output/bins/pDQ497626.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:09 2020 # [ok]