# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 285 RrnaAD PF00398.15 262 2.7e-71 231.3 0.0 1 1 8e-73 3.4e-71 231.0 0.0 3 259 6 254 4 256 0.97 # 2085 # 2939 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_21 - 195 MipZ PF09140.6 261 6.7e-13 39.9 0.9 1 1 9e-13 1.9e-11 35.2 0.9 5 105 5 107 1 139 0.67 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_19 - 207 MipZ PF09140.6 261 3.4e-07 21.2 0.1 1 1 2.2e-08 4.6e-07 20.8 0.1 2 131 2 128 1 133 0.81 # 17721 # 18341 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_21 - 195 YhjQ PF06564.7 244 1.3e-05 16.3 0.6 1 2 2.8e-06 0.00012 13.2 0.2 3 38 2 37 1 41 0.94 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_21 - 195 YhjQ PF06564.7 244 1.3e-05 16.3 0.6 2 2 0.012 0.48 1.3 0.0 120 145 81 106 49 185 0.72 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_5 - 336 GIDA PF01134.17 392 8.6e-06 16.4 0.1 1 1 4.5e-07 1.9e-05 15.3 0.0 2 31 12 41 11 58 0.87 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_4 - 285 Methyltransf_18 PF12847.2 112 8.5e-05 14.8 0.0 1 1 3.2e-06 0.00014 14.2 0.0 3 69 35 95 33 180 0.73 # 2085 # 2939 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_18 - 1139 UvrD_C_2 PF13538.1 104 3.7e-05 15.6 0.9 1 1 2.5e-06 0.00011 14.1 0.1 4 100 720 823 718 827 0.62 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_5 - 336 Pyr_redox_2 PF07992.9 201 5.2e-12 37.7 0.0 1 2 5.7e-13 2.4e-11 35.5 0.0 3 171 13 184 11 239 0.73 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 Pyr_redox_2 PF07992.9 201 5.2e-12 37.7 0.0 2 2 0.036 1.5 0.3 0.0 105 123 260 278 167 291 0.84 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_18 - 1139 AAA_22 PF13401.1 131 8.2e-06 17.7 4.1 1 1 2.3e-06 4.8e-05 15.2 0.0 7 126 471 585 467 590 0.68 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_12 - 309 AAA_22 PF13401.1 131 6.9e-05 14.7 0.0 1 1 8.7e-06 0.00018 13.3 0.0 9 109 32 167 26 216 0.70 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_21 - 195 DUF1611 PF07755.6 301 3.6e-05 14.2 0.2 1 2 6.5e-06 0.00027 11.3 0.1 124 191 12 84 9 86 0.78 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_21 - 195 DUF1611 PF07755.6 301 3.6e-05 14.2 0.2 2 2 0.011 0.45 0.7 0.0 31 52 99 120 91 127 0.83 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_21 - 195 SRP54 PF00448.17 196 1.7e-05 16.0 0.0 1 1 7.5e-07 3.2e-05 15.1 0.0 11 45 11 43 1 88 0.71 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_5 - 336 NAD_binding_7 PF13241.1 103 6.1e-05 15.0 0.0 1 1 6.9e-06 0.00029 12.8 0.0 4 39 6 41 3 91 0.89 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_12 - 309 AAA_21 PF13304.1 303 2.2e-15 49.0 0.0 1 2 1.8e-07 7.6e-06 17.7 0.0 1 23 29 51 29 69 0.85 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_12 - 309 AAA_21 PF13304.1 303 2.2e-15 49.0 0.0 2 2 5.2e-11 2.2e-09 29.3 0.0 238 297 129 185 100 190 0.89 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_21 - 195 LpxK PF02606.9 326 0.00018 12.1 0.2 1 1 7.1e-06 0.0003 11.4 0.2 46 71 10 35 2 43 0.91 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_21 - 195 ArsA_ATPase PF02374.10 305 2.1e-06 18.6 1.2 1 3 1.3e-07 5.3e-06 17.3 0.2 9 38 9 38 3 49 0.93 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_21 - 195 ArsA_ATPase PF02374.10 305 2.1e-06 18.6 1.2 2 3 0.072 3 -1.6 0.0 128 136 80 88 65 92 0.78 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_21 - 195 ArsA_ATPase PF02374.10 305 2.1e-06 18.6 1.2 3 3 0.089 3.7 -1.9 0.0 169 190 132 153 99 176 0.59 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_18 - 1139 PhoH PF02562.11 205 2.9e-06 18.3 0.1 1 2 0.0013 0.056 4.3 0.1 6 34 453 483 450 518 0.78 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 1139 PhoH PF02562.11 205 2.9e-06 18.3 0.1 2 2 9.5e-06 0.0004 11.3 0.0 120 173 548 602 533 624 0.80 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_5 - 336 Shikimate_DH PF01488.15 135 0.0002 13.1 0.3 1 2 2.1e-05 0.00089 11.1 0.1 10 40 7 37 2 39 0.88 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 Shikimate_DH PF01488.15 135 0.0002 13.1 0.3 2 2 0.095 4 -0.7 0.0 9 32 162 185 159 197 0.79 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 NAD_binding_8 PF13450.1 68 8.9e-11 33.4 0.9 1 1 6.1e-12 2.6e-10 32.0 0.1 1 36 14 49 14 53 0.96 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 FAD_binding_3 PF01494.14 356 2.9e-08 24.7 0.0 1 1 2e-09 8.3e-08 23.2 0.0 3 35 11 43 9 49 0.91 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_21 - 195 VirC1 PF07015.6 231 2.4e-13 41.3 0.0 1 1 8e-15 3.4e-13 40.8 0.0 5 182 4 169 1 175 0.75 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_21 - 195 Fer4_NifH PF00142.13 273 1.5e-05 15.9 0.1 1 1 5.8e-07 2.4e-05 15.2 0.1 8 37 9 38 4 50 0.91 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_18 - 1139 AAA_16 PF13191.1 185 0.025 6.2 16.1 1 3 0.032 1.4 0.6 0.1 90 177 232 318 188 329 0.56 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 1139 AAA_16 PF13191.1 185 0.025 6.2 16.1 2 3 1.1e-05 0.00048 11.8 0.7 16 103 460 537 454 719 0.72 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 1139 AAA_16 PF13191.1 185 0.025 6.2 16.1 3 3 0.071 3 -0.6 3.7 67 134 1009 1068 963 1091 0.55 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_12 - 309 AAA_23 PF13476.1 202 1e-05 17.6 0.1 1 1 3.7e-07 1.6e-05 17.0 0.1 17 39 22 47 11 50 0.82 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_21 - 195 AAA_18 PF13238.1 129 7.2e-07 21.3 0.0 1 1 3.2e-08 1.3e-06 20.4 0.0 8 84 11 90 9 110 0.91 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_21 - 195 CbiA PF01656.18 195 5.3e-25 79.6 0.3 1 1 3.9e-26 8.2e-25 79.0 0.3 3 192 5 168 3 171 0.78 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_19 - 207 CbiA PF01656.18 195 1e-09 29.8 0.0 1 1 5.3e-11 1.1e-09 29.6 0.0 1 142 3 143 3 199 0.80 # 17721 # 18341 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_4 - 285 Methyltransf_25 PF13649.1 101 2.3e-05 16.5 0.0 1 1 1e-06 4.3e-05 15.6 0.0 1 92 36 117 36 119 0.83 # 2085 # 2939 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 336 HI0933_like PF03486.9 409 1.9e-09 28.1 0.0 1 2 9.9e-07 4.2e-05 13.8 0.2 2 36 11 45 10 47 0.93 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 HI0933_like PF03486.9 409 1.9e-09 28.1 0.0 2 2 3.3e-06 0.00014 12.0 0.0 108 169 80 139 77 186 0.92 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_12 - 309 AAA_29 PF13555.1 62 2.1e-05 15.8 0.2 1 1 9.3e-07 3.9e-05 14.9 0.2 18 40 23 44 15 55 0.81 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_5 - 336 FAD_binding_2 PF00890.19 417 1e-07 22.7 0.2 1 2 3.8e-08 1.6e-06 18.8 0.0 2 37 12 47 11 56 0.92 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 FAD_binding_2 PF00890.19 417 1e-07 22.7 0.2 2 2 0.0049 0.21 2.0 0.0 189 266 122 211 82 223 0.71 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 Thi4 PF01946.12 230 8.7e-07 19.9 0.0 1 1 4.1e-08 1.7e-06 18.9 0.0 19 57 11 48 3 60 0.85 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 Pyr_redox_3 PF13738.1 203 1e-29 95.7 0.0 1 2 2.2e-30 9.1e-29 92.6 0.0 1 202 13 199 13 200 0.90 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 Pyr_redox_3 PF13738.1 203 1e-29 95.7 0.0 2 2 0.031 1.3 0.6 0.0 123 137 262 276 241 312 0.79 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_2 - 582 N6_Mtase PF02384.11 311 6.1e-08 23.7 0.0 1 1 7.1e-09 3e-07 21.4 0.0 48 186 29 214 12 220 0.75 # 164 # 1909 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.548 1_12 - 309 DUF258 PF03193.11 161 0.00026 11.9 0.0 1 1 9.5e-06 0.0004 11.3 0.0 25 66 16 58 2 63 0.82 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_21 - 195 AAA_31 PF13614.1 157 3.7e-11 34.9 0.1 1 2 1.9e-10 7.9e-09 27.3 0.0 2 41 2 41 1 54 0.94 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_21 - 195 AAA_31 PF13614.1 157 3.7e-11 34.9 0.1 2 2 0.0011 0.045 5.3 0.0 119 150 80 110 56 120 0.77 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_12 - 309 AAA_33 PF13671.1 143 2.7e-05 15.8 0.4 1 1 1.2e-05 0.00051 11.6 0.4 4 105 32 183 29 242 0.64 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_21 - 195 KTI12 PF08433.5 270 0.00017 12.5 0.0 1 1 8.1e-06 0.00034 11.5 0.0 12 55 12 54 4 87 0.68 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_2 - 582 Methyltransf_26 PF13659.1 117 1.1e-12 39.8 0.0 1 2 6.2e-13 1.3e-11 36.3 0.0 5 116 32 212 29 213 0.76 # 164 # 1909 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.548 1_2 - 582 Methyltransf_26 PF13659.1 117 1.1e-12 39.8 0.0 2 2 0.058 1.2 0.9 0.0 23 45 363 385 325 493 0.75 # 164 # 1909 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.548 1_4 - 285 Methyltransf_26 PF13659.1 117 6.5e-09 27.6 0.1 1 1 4.7e-10 9.9e-09 27.0 0.1 4 91 36 112 33 151 0.79 # 2085 # 2939 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_18 - 1139 AAA_30 PF13604.1 196 2.2e-58 188.7 7.7 1 1 1.1e-59 2.2e-58 188.7 7.7 2 195 452 653 451 654 0.96 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_12 - 309 AAA_30 PF13604.1 196 0.00024 12.4 1.1 1 2 0.00049 0.01 7.0 0.1 19 45 28 54 12 81 0.78 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_12 - 309 AAA_30 PF13604.1 196 0.00024 12.4 1.1 2 2 0.0045 0.095 3.9 0.1 91 117 192 218 163 231 0.81 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_4 - 285 MTS PF05175.9 170 7.4e-08 23.6 0.0 1 1 2.7e-09 1.1e-07 23.0 0.0 28 114 29 110 5 119 0.83 # 2085 # 2939 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 336 Lycopene_cycl PF05834.7 374 0.00053 10.6 0.1 1 1 1.3e-05 0.00053 10.6 0.1 3 44 13 52 11 59 0.90 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_12 - 309 ABC_tran PF00005.22 137 9.3e-27 85.7 0.0 1 1 4.2e-28 1.8e-26 84.8 0.0 2 137 18 156 17 156 0.94 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_5 - 336 K_oxygenase PF13434.1 341 2.6e-10 31.4 0.0 1 3 0.0064 0.27 1.7 0.0 194 212 13 31 6 49 0.71 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 K_oxygenase PF13434.1 341 2.6e-10 31.4 0.0 2 3 3.9e-10 1.6e-08 25.4 0.0 130 225 112 197 84 204 0.81 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 K_oxygenase PF13434.1 341 2.6e-10 31.4 0.0 3 3 0.023 0.96 -0.1 0.0 326 340 262 276 252 277 0.86 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_18 - 1139 AAA_19 PF13245.1 76 4.3e-11 34.2 4.7 1 2 1.7e-10 3.5e-09 28.1 1.2 8 75 465 527 458 528 0.76 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 1139 AAA_19 PF13245.1 76 4.3e-11 34.2 4.7 2 2 0.00098 0.021 6.4 0.1 30 62 661 692 635 710 0.74 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_21 - 195 AAA_19 PF13245.1 76 2.3e-05 15.9 0.9 1 2 0.00011 0.0022 9.5 0.1 19 48 10 35 3 47 0.83 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_21 - 195 AAA_19 PF13245.1 76 2.3e-05 15.9 0.9 2 2 0.005 0.11 4.1 0.0 6 24 75 93 70 148 0.66 # 18662 # 19246 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 1_12 - 309 AAA_10 PF12846.2 304 1e-07 23.3 0.2 1 2 1.8e-05 0.00076 10.6 0.0 6 23 32 49 28 73 0.82 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_12 - 309 AAA_10 PF12846.2 304 1e-07 23.3 0.2 2 2 1.4e-05 0.00058 11.0 0.0 214 273 134 203 97 242 0.81 # 8233 # 9159 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.684 1_5 - 336 DAO PF01266.19 358 4.4e-15 47.0 4.8 1 2 8.3e-12 3.5e-10 30.9 0.2 2 45 12 51 11 101 0.74 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 DAO PF01266.19 358 4.4e-15 47.0 4.8 2 2 7e-08 2.9e-06 18.0 0.7 169 343 103 304 100 316 0.62 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 ThiF PF00899.16 136 0.00027 12.4 1.1 1 1 9.6e-06 0.00041 11.9 0.1 3 35 10 42 8 44 0.90 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 FMO-like PF00743.14 532 3.8e-11 33.4 0.0 1 2 3.9e-05 0.0016 8.2 0.0 5 91 13 88 10 96 0.68 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 FMO-like PF00743.14 532 3.8e-11 33.4 0.0 2 2 1.7e-09 7.2e-08 22.6 0.0 142 209 128 191 120 206 0.88 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 NAD_binding_9 PF13454.1 156 9.3e-10 30.2 0.2 1 2 2.7e-07 1.1e-05 16.9 0.0 1 54 13 60 13 75 0.83 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 NAD_binding_9 PF13454.1 156 9.3e-10 30.2 0.2 2 2 3.4e-05 0.0014 10.1 0.0 90 155 77 134 72 135 0.77 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 Pyr_redox PF00070.22 80 8.4e-06 17.9 0.2 1 2 7.2e-05 0.003 9.7 0.1 2 29 12 39 11 45 0.88 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 336 Pyr_redox PF00070.22 80 8.4e-06 17.9 0.2 2 2 0.001 0.042 6.0 0.0 1 31 167 196 167 209 0.89 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_18 - 1139 AAA_11 PF13086.1 236 6.9e-09 27.2 0.4 1 5 0.098 4.1 -1.5 0.2 133 170 221 287 119 321 0.58 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 1139 AAA_11 PF13086.1 236 6.9e-09 27.2 0.4 2 5 0.09 3.8 -1.4 0.1 193 209 417 433 406 434 0.81 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 1139 AAA_11 PF13086.1 236 6.9e-09 27.2 0.4 3 5 1.8e-06 7.7e-05 14.0 0.0 2 95 452 534 451 549 0.89 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 1139 AAA_11 PF13086.1 236 6.9e-09 27.2 0.4 4 5 1.5e-08 6.5e-07 20.8 0.1 194 231 549 589 538 592 0.82 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 1139 AAA_11 PF13086.1 236 6.9e-09 27.2 0.4 5 5 0.062 2.6 -0.8 1.8 120 140 963 1035 925 1076 0.50 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_4 - 285 TIGR00755 TIGR00755 256 5.5e-48 154.8 0.0 1 1 1.6e-49 6.6e-48 154.5 0.0 4 254 8 253 6 255 0.95 # 2085 # 2939 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 336 Amino_oxidase PF01593.19 450 4.9e-06 17.4 0.4 1 1 2.3e-07 9.8e-06 16.4 0.1 2 28 20 46 20 50 0.97 # 3872 # 4879 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.664 1_18 - 1139 PIF1 PF05970.9 364 5e-06 17.3 0.0 1 1 2e-07 8.5e-06 16.5 0.0 2 116 452 561 451 627 0.77 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_4 - 285 Methyltransf_23 PF13489.1 161 5.3e-06 17.9 0.0 1 1 2.3e-07 9.7e-06 17.1 0.0 20 60 30 82 10 123 0.80 # 2085 # 2939 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_18 - 1139 Herpes_Helicase PF02689.9 819 0.00017 11.0 0.2 1 3 0.00043 0.018 4.3 0.0 48 79 456 487 414 495 0.74 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 1139 Herpes_Helicase PF02689.9 819 0.00017 11.0 0.2 2 3 0.048 2 -2.5 0.0 195 209 547 561 536 568 0.83 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 1139 Herpes_Helicase PF02689.9 819 0.00017 11.0 0.2 3 3 0.00073 0.031 3.6 0.0 721 787 760 828 739 833 0.83 # 13810 # 17226 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.520 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fda4ae57-ce19-4f5d-9aeb-e6b2d0d246c1 # Target file: checkm_output/bins/pDQ390458.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ390458.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fda4ae57-ce19-4f5d-9aeb-e6b2d0d246c1 checkm_output/bins/pDQ390458.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:08 2020 # [ok]