# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 768 UvrD_C_2 PF13538.1 104 2.9e-21 66.9 0.4 1 1 3.3e-22 1.1e-20 65.1 0.0 3 100 621 718 619 722 0.79 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 AAA_22 PF13401.1 131 5.7e-10 30.8 0.1 1 1 7.3e-11 2.3e-09 28.8 0.0 4 125 398 516 392 522 0.84 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 PhoH PF02562.11 205 6.6e-09 26.5 0.0 1 2 1.4e-07 4.4e-06 17.3 0.0 4 37 383 416 380 434 0.86 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 PhoH PF02562.11 205 6.6e-09 26.5 0.0 2 2 0.00029 0.0094 6.4 0.0 119 162 480 523 477 557 0.76 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 AAA_16 PF13191.1 185 0.00016 12.9 0.0 1 1 1.2e-05 0.00038 11.8 0.0 25 77 399 448 387 467 0.81 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 AAA_14 PF13173.1 128 2.5e-07 22.0 0.6 1 1 6.1e-08 1.9e-06 19.1 0.0 2 98 398 516 397 521 0.62 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 AAA PF00004.24 132 0.0001 13.8 0.0 1 2 4.4e-05 0.0014 10.2 0.0 2 53 402 449 401 463 0.81 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 AAA PF00004.24 132 0.0001 13.8 0.0 2 2 0.067 2.2 -0.2 0.0 34 64 598 628 577 639 0.75 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 DUF258 PF03193.11 161 5.5e-05 13.7 0.0 1 1 5.3e-06 0.00017 12.1 0.0 24 83 387 446 378 453 0.73 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 AAA_30 PF13604.1 196 4.6e-22 69.8 0.0 1 1 2.3e-23 7.4e-22 69.1 0.0 3 171 385 558 383 569 0.85 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 ABC_tran PF00005.22 137 0.00015 13.4 0.0 1 1 4.5e-05 0.0014 10.2 0.0 11 51 398 441 391 516 0.73 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 AAA_19 PF13245.1 76 1.7e-11 35.1 0.0 1 1 1.1e-12 3.6e-11 34.1 0.0 8 74 397 461 390 463 0.85 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 Helicase_RecD PF05127.9 177 3.8e-07 21.2 0.0 1 1 4.6e-08 1.5e-06 19.3 0.0 2 115 403 505 402 514 0.74 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_7 - 210 Zot PF05707.7 193 1.8e-12 38.4 0.1 1 1 4.7e-12 1.5e-10 32.1 0.1 4 155 5 129 2 162 0.73 # 2808 # 3437 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.308 1_28 - 768 Viral_helicase1 PF01443.13 234 2.7e-16 51.0 2.2 1 3 0.08 2.6 -1.3 0.3 119 163 144 187 125 264 0.58 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 Viral_helicase1 PF01443.13 234 2.7e-16 51.0 2.2 2 3 1.3e-08 4.1e-07 21.0 0.0 3 135 403 551 401 598 0.72 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 Viral_helicase1 PF01443.13 234 2.7e-16 51.0 2.2 3 3 1.1e-10 3.5e-09 27.8 0.0 183 233 671 722 578 723 0.72 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 AAA_11 PF13086.1 236 2.3e-09 28.4 5.9 1 2 2.3e-07 7.3e-06 16.9 0.0 5 75 387 448 383 473 0.82 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 AAA_11 PF13086.1 236 2.3e-09 28.4 5.9 2 2 2.2e-06 7.2e-05 13.7 0.0 177 232 462 522 454 526 0.75 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 PIF1 PF05970.9 364 2.5e-12 37.6 2.5 1 2 0.0053 0.17 2.0 2.7 244 314 200 270 192 284 0.86 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 PIF1 PF05970.9 364 2.5e-12 37.6 2.5 2 2 4e-12 1.3e-10 32.0 0.0 24 159 400 525 385 560 0.78 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_28 - 768 AAA_5 PF07728.9 139 1.8e-07 22.3 0.0 1 1 1.5e-08 4.8e-07 20.9 0.0 3 88 402 503 400 512 0.85 # 10995 # 13298 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6ce44f14-761d-4c0d-b137-d008f2159405 # Target file: checkm_output/bins/pDQ364061.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ364061.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6ce44f14-761d-4c0d-b137-d008f2159405 checkm_output/bins/pDQ364061.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:06 2020 # [ok]