# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 282 MipZ PF09140.6 261 1.3e-06 19.9 0.0 1 2 9.2e-07 5.7e-05 14.5 0.0 7 41 8 42 3 60 0.89 # 9926 # 10771 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_9 - 282 MipZ PF09140.6 261 1.3e-06 19.9 0.0 2 2 0.0024 0.15 3.3 0.0 83 125 111 154 93 158 0.73 # 9926 # 10771 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_22 - 328 NB-ARC PF00931.17 287 0.00043 11.4 0.0 1 1 1.1e-05 0.00068 10.7 0.0 9 37 9 37 2 49 0.86 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_22 - 328 Septin PF00735.13 281 0.00072 10.8 0.0 1 1 1.7e-05 0.001 10.3 0.0 7 71 22 90 19 97 0.75 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_33 - 741 AAA_22 PF13401.1 131 4.2e-07 22.4 0.0 1 1 3.2e-08 1e-06 21.2 0.0 3 127 357 492 353 496 0.77 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_22 - 328 AAA_22 PF13401.1 131 0.00015 14.2 0.1 1 1 1.9e-05 0.00059 12.2 0.1 6 30 21 45 16 116 0.53 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_10 - 140 ATP_bind_2 PF03668.10 284 1.3e-09 29.7 0.0 1 1 3.4e-11 2.1e-09 29.0 0.0 175 279 23 120 3 126 0.84 # 11085 # 11504 # -1 # ID=1_10;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.748 1_22 - 328 KAP_NTPase PF07693.9 325 6.3e-06 17.5 0.0 1 1 1.7e-07 1e-05 16.8 0.0 18 130 17 127 7 178 0.73 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_22 - 328 AAA_17 PF13207.1 121 0.00055 13.0 1.9 1 1 1.9e-05 0.0012 11.9 1.0 1 16 21 36 21 38 0.92 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_2 - 902 Helicase_C PF00271.26 78 1.3e-07 23.7 0.2 1 1 4.1e-09 2.5e-07 22.8 0.2 11 77 372 449 368 450 0.90 # 1188 # 3893 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.714 1_9 - 282 ArsA_ATPase PF02374.10 305 6.6e-08 24.1 0.0 1 1 2.9e-09 1.8e-07 22.7 0.0 8 47 9 48 4 56 0.90 # 9926 # 10771 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_9 - 282 Methyltransf_24 PF13578.1 106 0.0003 13.9 0.0 1 1 1.8e-05 0.0011 12.1 0.0 43 87 84 144 12 156 0.58 # 9926 # 10771 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_9 - 282 VirC1 PF07015.6 231 0.00044 11.6 0.0 1 2 0.00068 0.042 5.1 0.0 1 40 1 40 1 48 0.82 # 9926 # 10771 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_9 - 282 VirC1 PF07015.6 231 0.00044 11.6 0.0 2 2 0.00097 0.06 4.6 0.0 101 142 146 191 112 218 0.74 # 9926 # 10771 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_9 - 282 Fer4_NifH PF00142.13 273 7.5e-05 14.2 0.0 1 1 2e-06 0.00012 13.5 0.0 4 43 5 45 2 61 0.87 # 9926 # 10771 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_22 - 328 AAA_16 PF13191.1 185 3.6e-05 16.0 1.2 1 1 2.9e-06 9e-05 14.7 1.2 22 164 17 174 6 201 0.58 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_33 - 741 AAA_16 PF13191.1 185 0.0023 10.1 3.8 1 2 0.00023 0.007 8.6 0.4 18 62 352 396 347 409 0.80 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_33 - 741 AAA_16 PF13191.1 185 0.0023 10.1 3.8 2 2 0.08 2.5 0.3 0.0 149 177 441 477 412 486 0.60 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_9 - 282 CbiA PF01656.18 195 6.9e-23 73.3 0.0 1 1 1.3e-24 8.2e-23 73.0 0.0 2 184 5 225 4 243 0.76 # 9926 # 10771 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_22 - 328 KaiC PF06745.8 227 2.2e-05 15.9 0.0 1 1 5.3e-07 3.3e-05 15.3 0.0 15 90 15 91 5 108 0.80 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_22 - 328 AAA_29 PF13555.1 62 0.00014 13.6 3.6 1 2 3.1e-06 0.00019 13.2 0.0 24 39 20 35 7 38 0.83 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_22 - 328 AAA_29 PF13555.1 62 0.00014 13.6 3.6 2 2 0.068 4.2 -0.7 0.4 37 45 277 285 277 290 0.83 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_22 - 328 AAA PF00004.24 132 0.00091 11.7 1.2 1 2 0.012 0.76 2.2 0.1 1 16 22 37 22 39 0.90 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_22 - 328 AAA PF00004.24 132 0.00091 11.7 1.2 2 2 0.00031 0.019 7.4 0.2 61 120 44 101 38 110 0.81 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_22 - 328 DUF258 PF03193.11 161 0.00081 10.8 0.0 1 1 2.2e-05 0.0013 10.1 0.0 26 64 9 48 2 90 0.77 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_9 - 282 AAA_31 PF13614.1 157 4.3e-09 28.7 0.0 1 1 1.4e-10 8.8e-09 27.7 0.0 6 148 7 157 3 162 0.81 # 9926 # 10771 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_22 - 328 AAA_33 PF13671.1 143 1e-19 63.0 1.8 1 1 2.9e-21 1.8e-19 62.3 1.8 1 136 21 144 21 151 0.88 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_22 - 328 KTI12 PF08433.5 270 1.2e-08 26.7 0.0 1 1 4.1e-10 2.6e-08 25.6 0.0 3 124 21 135 20 178 0.83 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_33 - 741 FtsK_SpoIIIE PF01580.13 205 8e-05 14.4 0.1 1 2 2.6e-05 0.0016 10.1 0.0 39 120 357 434 331 438 0.84 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_33 - 741 FtsK_SpoIIIE PF01580.13 205 8e-05 14.4 0.1 2 2 0.0097 0.6 1.7 0.0 154 203 443 491 440 493 0.87 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_22 - 328 ABC_tran PF00005.22 137 0.00043 12.8 0.0 1 1 2e-05 0.0012 11.4 0.0 3 28 11 36 9 41 0.83 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_33 - 741 DAP3 PF10236.4 309 0.00022 12.4 0.1 1 2 7.3e-05 0.0045 8.1 0.1 24 60 359 396 353 410 0.80 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_33 - 741 DAP3 PF10236.4 309 0.00022 12.4 0.1 2 2 0.0035 0.22 2.6 0.0 120 183 400 471 395 479 0.73 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_44 - 139 TOBE PF03459.12 64 5e-06 18.8 0.4 1 2 9.6e-07 6e-05 15.4 0.1 36 60 70 94 67 95 0.92 # 33289 # 33705 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.741 1_44 - 139 TOBE PF03459.12 64 5e-06 18.8 0.4 2 2 0.025 1.6 1.3 0.0 27 42 98 113 97 116 0.75 # 33289 # 33705 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.741 1_33 - 741 AAA_10 PF12846.2 304 2e-10 32.7 0.2 1 2 0.00038 0.023 6.3 0.1 2 33 359 390 358 433 0.89 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_33 - 741 AAA_10 PF12846.2 304 2e-10 32.7 0.2 2 2 1.1e-09 6.6e-08 24.5 0.0 219 270 442 500 405 511 0.83 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_2 - 902 ResIII PF04851.10 184 8.1e-17 53.8 0.0 1 1 6.8e-18 4.2e-16 51.5 0.0 8 183 13 211 5 212 0.75 # 1188 # 3893 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.714 1_33 - 741 Zot PF05707.7 193 0.00011 13.9 0.0 1 1 3e-06 0.00019 13.2 0.0 82 126 446 491 427 493 0.85 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_22 - 328 Viral_helicase1 PF01443.13 234 0.00018 13.3 0.0 1 1 4.1e-06 0.00025 12.8 0.0 3 69 24 88 22 115 0.81 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_2 - 902 DEAD PF00270.24 169 3.6e-08 25.3 0.0 1 1 4.7e-09 1.4e-07 23.3 0.0 19 133 38 183 26 213 0.64 # 1188 # 3893 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.714 1_33 - 741 DEAD PF00270.24 169 0.00041 12.1 0.0 1 1 2.4e-05 0.00076 11.2 0.0 120 152 444 479 424 496 0.72 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_33 - 741 DUF853 PF05872.7 504 0.00053 10.6 0.0 1 1 1.5e-05 0.00094 9.7 0.0 257 303 443 492 440 506 0.75 # 24856 # 27078 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.735 1_22 - 328 AAA_24 PF13479.1 213 2.1e-07 22.9 0.0 1 1 5.3e-09 3.3e-07 22.3 0.0 6 76 22 89 18 105 0.79 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 1_22 - 328 NACHT PF05729.7 166 0.00053 11.9 0.0 1 1 2e-05 0.0012 10.7 0.0 2 18 21 37 20 41 0.91 # 18822 # 19805 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.751 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7b4e36da-86ba-4719-9b58-92f88f3665cb # Target file: checkm_output/bins/pDQ322651.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ322651.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7b4e36da-86ba-4719-9b58-92f88f3665cb checkm_output/bins/pDQ322651.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:06 2020 # [ok]