# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_27 - 247 MipZ PF09140.6 261 8.4e-10 29.1 0.0 1 2 0.0038 0.1 2.6 0.0 9 42 13 46 6 52 0.89 # 18581 # 19321 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.703 1_27 - 247 MipZ PF09140.6 261 8.4e-10 29.1 0.0 2 2 8.9e-10 2.4e-08 24.4 0.1 84 190 65 169 59 184 0.86 # 18581 # 19321 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.703 1_16 - 518 DUF87 PF01935.12 229 8.7e-07 20.0 0.1 1 1 5.5e-08 1.5e-06 19.2 0.1 14 60 257 301 248 305 0.81 # 8378 # 9931 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.680 1_24 - 1101 DUF927 PF06048.6 286 4.5e-15 46.6 1.3 1 2 3.6e-16 9.8e-15 45.5 0.0 173 280 166 276 158 283 0.88 # 14162 # 17464 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.699 1_24 - 1101 DUF927 PF06048.6 286 4.5e-15 46.6 1.3 2 2 0.062 1.7 -1.2 0.5 212 246 628 663 625 666 0.75 # 14162 # 17464 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.699 1_16 - 518 AAA_16 PF13191.1 185 8.7e-05 13.6 0.0 1 1 5.2e-06 0.00014 12.9 0.0 22 63 263 306 255 401 0.70 # 8378 # 9931 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.680 1_27 - 247 AAA_31 PF13614.1 157 0.00016 12.7 0.0 1 2 6.7e-05 0.0018 9.3 0.0 3 39 7 43 5 49 0.91 # 18581 # 19321 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.703 1_27 - 247 AAA_31 PF13614.1 157 0.00016 12.7 0.0 2 2 0.023 0.62 1.0 0.0 120 154 82 117 73 120 0.86 # 18581 # 19321 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.703 1_13 - 243 FtsK_SpoIIIE PF01580.13 205 1.5e-10 31.9 0.0 1 2 5.8e-10 7.9e-09 26.3 0.0 20 123 18 114 5 122 0.90 # 6795 # 7523 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.738 1_13 - 243 FtsK_SpoIIIE PF01580.13 205 1.5e-10 31.9 0.0 2 2 0.0057 0.077 3.5 0.1 175 197 143 165 121 173 0.79 # 6795 # 7523 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.738 1_16 - 518 FtsK_SpoIIIE PF01580.13 205 2.8e-09 27.8 0.1 1 1 6.5e-10 8.8e-09 26.1 0.1 27 202 253 421 244 424 0.81 # 8378 # 9931 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.680 1_16 - 518 AAA_10 PF12846.2 304 2.3e-10 31.4 0.0 1 2 2.9e-10 3.9e-09 27.3 0.0 1 52 265 316 265 345 0.89 # 8378 # 9931 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.680 1_16 - 518 AAA_10 PF12846.2 304 2.3e-10 31.4 0.0 2 2 0.02 0.26 1.6 0.0 215 288 351 445 338 450 0.74 # 8378 # 9931 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.680 1_13 - 243 AAA_10 PF12846.2 304 4.9e-05 13.9 0.0 1 1 4.7e-06 6.4e-05 13.5 0.0 2 39 38 76 37 133 0.91 # 6795 # 7523 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.738 1_16 - 518 TrwB_AAD_bind PF10412.4 386 2.8e-06 17.2 0.0 1 1 1.6e-07 4.3e-06 16.6 0.0 7 52 257 302 253 305 0.92 # 8378 # 9931 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.680 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6af4bcea-a306-4a4a-9999-008b5f14b32d # Target file: checkm_output/bins/pDQ322650.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ322650.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6af4bcea-a306-4a4a-9999-008b5f14b32d checkm_output/bins/pDQ322650.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:05 2020 # [ok]