# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 271 MipZ PF09140.6 261 6.1e-13 40.0 0.0 1 2 2.2e-10 8.8e-09 26.4 0.0 2 43 4 44 3 62 0.88 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 MipZ PF09140.6 261 6.1e-13 40.0 0.0 2 2 8.9e-06 0.00036 11.2 0.0 84 122 112 150 91 161 0.86 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 YhjQ PF06564.7 244 2.5e-08 25.1 0.0 1 2 2.5e-07 1e-05 16.6 0.0 9 44 10 45 2 59 0.85 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 YhjQ PF06564.7 244 2.5e-08 25.1 0.0 2 2 0.00029 0.012 6.5 0.0 110 151 119 160 89 173 0.84 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_23 - 668 AAA_22 PF13401.1 131 0.00011 14.0 0.0 1 1 5.2e-06 0.00021 13.1 0.0 3 127 269 412 266 416 0.74 # 16523 # 18526 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.700 1_13 - 271 ATP_bind_1 PF03029.12 238 7.4e-05 13.9 0.0 1 2 7.1e-06 0.00028 12.0 0.0 6 36 13 43 11 48 0.94 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 ATP_bind_1 PF03029.12 238 7.4e-05 13.9 0.0 2 2 0.085 3.4 -1.3 0.0 89 99 123 135 109 136 0.68 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 LpxK PF02606.9 326 0.00016 12.3 0.0 1 1 6.1e-06 0.00024 11.7 0.0 38 71 5 37 3 39 0.92 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_35 - 440 AAA_4 PF04326.9 122 3.7e-15 47.8 0.0 1 1 1.4e-16 5.8e-15 47.2 0.0 1 119 34 160 34 162 0.78 # 27256 # 28575 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.688 1_13 - 271 ArsA_ATPase PF02374.10 305 4e-10 30.7 0.1 1 1 1.7e-11 6.6e-10 30.0 0.1 9 51 11 53 3 82 0.89 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 VirC1 PF07015.6 231 4.1e-06 17.6 0.0 1 1 1.9e-07 7.4e-06 16.7 0.0 4 45 5 46 2 52 0.89 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 Fer4_NifH PF00142.13 273 9.9e-09 26.3 0.0 1 1 3.9e-10 1.6e-08 25.6 0.0 7 44 10 47 3 78 0.86 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 AAA_16 PF13191.1 185 4.8e-05 15.0 0.0 1 1 1.8e-06 7.3e-05 14.4 0.0 34 81 13 72 11 164 0.60 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 CbiA PF01656.18 195 6.5e-37 118.4 0.0 1 1 2e-38 8e-37 118.1 0.0 1 181 5 219 5 237 0.81 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 AAA_31 PF13614.1 157 2.2e-07 22.6 0.0 1 1 2e-08 8e-07 20.7 0.0 2 46 4 48 3 74 0.87 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_23 - 668 FtsK_SpoIIIE PF01580.13 205 3.2e-08 24.9 0.0 1 1 5e-08 1e-06 20.0 0.0 34 204 266 411 263 412 0.81 # 16523 # 18526 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.700 1_13 - 271 FtsK_SpoIIIE PF01580.13 205 0.00024 12.2 0.0 1 2 5.6e-05 0.0011 10.0 0.0 47 79 12 42 7 79 0.83 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 FtsK_SpoIIIE PF01580.13 205 0.00024 12.2 0.0 2 2 0.073 1.5 -0.2 0.0 145 181 137 184 82 198 0.73 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_13 - 271 AAA_19 PF13245.1 76 7.4e-05 14.1 0.1 1 1 4.5e-06 0.00018 12.9 0.1 20 48 13 37 11 76 0.85 # 10080 # 10892 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.677 1_23 - 668 AAA_10 PF12846.2 304 2.1e-07 22.2 0.0 1 2 4e-05 0.0016 9.5 0.0 2 40 271 310 270 366 0.73 # 16523 # 18526 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.700 1_23 - 668 AAA_10 PF12846.2 304 2.1e-07 22.2 0.0 2 2 1.5e-05 0.00061 10.8 0.0 220 297 369 443 338 447 0.84 # 16523 # 18526 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.700 1_9 - 140 Terminase_GpA PF05876.7 557 0.00013 12.0 0.7 1 1 3.4e-06 0.00013 11.9 0.7 202 257 39 93 16 125 0.82 # 7104 # 7523 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.714 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4f05df00-e87c-4ba9-878a-282aea975f1d # Target file: checkm_output/bins/pDQ322649.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ322649.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4f05df00-e87c-4ba9-878a-282aea975f1d checkm_output/bins/pDQ322649.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:38:05 2020 # [ok]