# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 344 Seryl_tRNA_N PF02403.17 108 0.0036 7.1 16.2 1 2 0.08 0.8 -0.5 0.7 36 36 197 197 149 253 0.59 # 5428 # 6459 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.368 1_9 - 344 Seryl_tRNA_N PF02403.17 108 0.0036 7.1 16.2 2 2 3.1e-06 3.1e-05 13.7 3.2 26 97 236 306 213 310 0.72 # 5428 # 6459 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.368 1_9 - 344 UvrD_C_2 PF13538.1 104 1.1e-06 18.4 2.0 1 1 3.2e-07 3.2e-06 17.0 0.0 54 102 12 56 2 58 0.83 # 5428 # 6459 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.368 1_1 - 599 PhoH PF02562.11 205 1.5e-05 13.9 0.0 1 1 4.9e-06 4.9e-05 12.2 0.0 6 38 503 537 500 552 0.84 # 1 # 1797 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.421 1_1 - 599 AAA_16 PF13191.1 185 4e-05 13.3 0.4 1 2 0.098 0.98 -1.0 0.0 158 178 102 122 42 147 0.83 # 1 # 1797 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.421 1_1 - 599 AAA_16 PF13191.1 185 4e-05 13.3 0.4 2 2 4.2e-05 0.00042 10.0 0.0 18 42 512 536 505 563 0.73 # 1 # 1797 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.421 1_10 - 232 AAA_30 PF13604.1 196 4.5e-25 78.0 0.0 1 1 3.1e-25 1.5e-24 76.2 0.0 92 191 8 108 1 113 0.92 # 6620 # 7315 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_1 - 599 AAA_30 PF13604.1 196 5.8e-15 45.0 0.1 1 1 2.2e-15 1.1e-14 44.1 0.1 5 80 505 599 502 599 0.91 # 1 # 1797 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.421 1_1 - 599 AAA_19 PF13245.1 76 3.2e-05 13.4 0.7 1 1 9e-06 9e-05 11.9 0.1 6 36 513 557 508 596 0.59 # 1 # 1797 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.421 1_10 - 232 Helicase_RecD PF05127.9 177 5.8e-05 12.4 0.0 1 2 4.1e-05 0.00041 9.7 0.0 88 133 7 57 1 80 0.74 # 6620 # 7315 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_10 - 232 Helicase_RecD PF05127.9 177 5.8e-05 12.4 0.0 2 2 0.022 0.22 0.7 0.0 94 130 171 214 69 229 0.53 # 6620 # 7315 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_10 - 232 AAA_11 PF13086.1 236 6.7e-07 18.7 0.1 1 2 4.8e-07 4.8e-06 15.9 0.0 187 230 4 51 1 54 0.76 # 6620 # 7315 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_10 - 232 AAA_11 PF13086.1 236 6.7e-07 18.7 0.1 2 2 0.023 0.23 0.6 0.2 66 112 114 166 60 228 0.60 # 6620 # 7315 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_4 - 85 ABC_tran_2 PF12848.2 85 1.5e-05 14.5 0.4 1 1 2.7e-06 2.7e-05 13.7 0.2 25 70 29 73 23 81 0.73 # 2441 # 2695 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f6d4f496-c430-4daa-ba5c-2737343f4b09 # Target file: checkm_output/bins/pDQ223897.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ223897.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f6d4f496-c430-4daa-ba5c-2737343f4b09 checkm_output/bins/pDQ223897.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:57 2020 # [ok]