# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 281 MipZ PF09140.6 261 1.1e-08 27.1 0.0 1 1 1e-08 8.8e-07 20.9 0.0 3 71 28 96 26 178 0.58 # 3771 # 4613 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.300 1_6 - 281 YhjQ PF06564.7 244 7.7e-08 24.6 0.0 1 1 1.3e-09 1.1e-07 24.1 0.0 3 153 27 181 25 185 0.75 # 3771 # 4613 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.300 6_2 - 450 3HCDH_N PF02737.13 180 8.9e-09 27.9 0.0 1 2 0.0048 0.41 2.9 0.1 4 32 10 38 7 108 0.91 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 3HCDH_N PF02737.13 180 8.9e-09 27.9 0.0 2 2 4.1e-09 3.6e-07 22.7 0.0 2 49 165 212 164 233 0.89 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 Pyr_redox_2 PF07992.9 201 1.6e-32 105.7 0.1 1 1 7.6e-34 6.6e-32 103.7 0.1 3 198 9 300 7 303 0.92 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_6 - 281 SRP54 PF00448.17 196 0.00037 12.7 0.1 1 2 5.8e-05 0.005 9.0 0.1 11 51 36 76 33 103 0.82 # 3771 # 4613 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.300 1_6 - 281 SRP54 PF00448.17 196 0.00037 12.7 0.1 2 2 0.014 1.2 1.2 0.0 128 154 190 218 116 221 0.78 # 3771 # 4613 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.300 3_2 - 53 TIGR00855 TIGR00855 125 4e-05 16.5 0.4 1 1 4.6e-07 4e-05 16.5 0.4 68 97 6 35 1 50 0.82 # 623 # 781 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.264 6_2 - 450 NAD_binding_7 PF13241.1 103 1.4e-05 18.1 0.2 1 2 0.0021 0.18 4.8 0.2 10 39 8 37 3 102 0.82 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 NAD_binding_7 PF13241.1 103 1.4e-05 18.1 0.2 2 2 4.3e-05 0.0038 10.2 0.0 8 54 163 213 156 262 0.74 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_6 - 281 AAA_17 PF13207.1 121 0.00066 13.2 0.1 1 1 3.2e-05 0.0028 11.2 0.1 9 101 36 127 35 205 0.67 # 3771 # 4613 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.300 1_6 - 281 ArsA_ATPase PF02374.10 305 3.5e-09 28.8 0.3 1 1 2.1e-10 1.8e-08 26.4 0.3 9 137 34 156 27 159 0.72 # 3771 # 4613 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.300 6_2 - 450 NAD_binding_8 PF13450.1 68 8e-06 18.6 0.9 1 2 0.00056 0.049 6.5 0.2 1 28 10 37 10 45 0.91 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 NAD_binding_8 PF13450.1 68 8e-06 18.6 0.9 2 2 3.8e-05 0.0033 10.2 0.0 1 28 167 194 167 197 0.93 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 F420_oxidored PF03807.12 96 0.0013 11.9 1.4 1 2 0.0013 0.12 5.6 0.1 4 32 10 35 7 40 0.86 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 F420_oxidored PF03807.12 96 0.0013 11.9 1.4 2 2 0.0043 0.37 4.0 0.0 2 29 165 189 164 193 0.88 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 FAD_binding_3 PF01494.14 356 6.4e-06 18.1 0.2 1 2 4.6e-05 0.004 8.9 0.1 3 33 7 37 5 42 0.90 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 FAD_binding_3 PF01494.14 356 6.4e-06 18.1 0.2 2 2 0.00025 0.022 6.4 0.0 5 31 166 192 164 200 0.91 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_6 - 281 VirC1 PF07015.6 231 2.1e-06 19.7 0.4 1 2 6.7e-07 5.8e-05 14.9 0.0 3 47 27 71 25 96 0.77 # 3771 # 4613 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.300 1_6 - 281 VirC1 PF07015.6 231 2.1e-06 19.7 0.4 2 2 0.0032 0.28 2.9 0.1 82 141 144 204 133 212 0.84 # 3771 # 4613 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.300 1_6 - 281 Fer4_NifH PF00142.13 273 4.2e-06 18.8 0.5 1 1 7.8e-08 6.7e-06 18.1 0.1 8 52 34 78 31 112 0.78 # 3771 # 4613 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.300 1_6 - 281 CbiA PF01656.18 195 3.2e-31 100.9 0.1 1 1 4.4e-33 3.8e-31 100.7 0.1 2 193 29 245 28 247 0.83 # 3771 # 4613 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.300 8_1 - 67 CSD PF00313.17 66 7.8e-34 108.1 1.5 1 1 1.9e-35 8.4e-34 108.0 1.5 2 65 3 65 2 66 0.98 # 493 # 693 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.358 8_2 - 67 CSD PF00313.17 66 2.4e-22 71.3 0.2 1 1 5.9e-24 2.6e-22 71.2 0.2 2 65 3 65 2 66 0.97 # 970 # 1170 # -1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_17 - 465 Methyltrn_RNA_2 PF04013.7 199 0.00014 14.1 0.7 1 2 7.2e-06 0.00063 12.0 0.2 31 103 50 121 48 126 0.80 # 10227 # 11621 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.335 1_17 - 465 Methyltrn_RNA_2 PF04013.7 199 0.00014 14.1 0.7 2 2 0.048 4.2 -0.5 0.0 103 143 277 317 241 325 0.69 # 10227 # 11621 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.335 6_2 - 450 Thi4 PF01946.12 230 1.8e-05 16.6 1.0 1 2 7.6e-06 0.00066 11.5 0.5 19 57 7 45 1 130 0.75 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 Thi4 PF01946.12 230 1.8e-05 16.6 1.0 2 2 0.0025 0.22 3.3 0.0 9 47 155 192 146 194 0.76 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 4_9 - 193 ThiS PF02597.15 77 0.012 8.8 9.6 1 3 0.00012 0.01 9.0 0.1 20 71 4 50 1 51 0.85 # 5625 # 6203 # -1 # ID=4_9;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=15bp;gc_cont=0.325 4_9 - 193 ThiS PF02597.15 77 0.012 8.8 9.6 2 3 0.006 0.53 3.6 1.7 9 40 81 116 70 139 0.75 # 5625 # 6203 # -1 # ID=4_9;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=15bp;gc_cont=0.325 4_9 - 193 ThiS PF02597.15 77 0.012 8.8 9.6 3 3 0.08 7 -0.0 0.2 13 39 148 174 133 185 0.61 # 5625 # 6203 # -1 # ID=4_9;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=15bp;gc_cont=0.325 6_2 - 450 Pyr_redox_3 PF13738.1 203 5.1e-06 19.4 0.0 1 2 1.1e-06 9.8e-05 15.2 0.0 75 195 72 190 9 195 0.63 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 Pyr_redox_3 PF13738.1 203 5.1e-06 19.4 0.0 2 2 0.021 1.8 1.2 0.0 114 147 233 266 202 301 0.70 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_6 - 281 AAA_31 PF13614.1 157 5.6e-09 28.8 0.6 1 1 2.6e-10 2.3e-08 26.9 0.5 8 152 33 179 27 184 0.77 # 3771 # 4613 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.300 6_2 - 450 NAD_Gly3P_dh_N PF01210.18 157 1.8e-05 17.2 0.0 1 2 0.00025 0.022 7.2 0.1 4 29 10 35 7 78 0.93 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 NAD_Gly3P_dh_N PF01210.18 157 1.8e-05 17.2 0.0 2 2 0.00018 0.015 7.7 0.0 2 28 165 191 164 252 0.90 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 2-Hacid_dh_C PF02826.14 178 4e-06 18.8 0.0 1 2 0.0018 0.15 3.9 0.1 41 68 10 37 4 41 0.89 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 2-Hacid_dh_C PF02826.14 178 4e-06 18.8 0.0 2 2 6e-06 0.00052 11.9 0.0 38 70 164 196 146 214 0.85 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 XdhC_C PF13478.1 136 0.00031 13.8 0.0 1 2 0.011 1 2.4 0.0 2 31 9 38 9 97 0.86 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 XdhC_C PF13478.1 136 0.00031 13.8 0.0 2 2 0.0001 0.0089 9.1 0.0 1 49 165 214 165 236 0.85 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 8_1 - 67 OB_RNB PF08206.6 58 0.0004 12.6 0.9 1 1 1.1e-05 0.00049 12.3 0.9 7 24 12 28 4 58 0.86 # 493 # 693 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.358 8_2 - 67 OB_RNB PF08206.6 58 0.00059 12.1 1.2 1 1 2.2e-05 0.00096 11.4 1.2 7 42 12 51 7 65 0.68 # 970 # 1170 # -1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 6_2 - 450 K_oxygenase PF13434.1 341 1.3e-05 16.9 0.0 1 2 1.3e-06 0.00011 13.9 0.0 134 212 109 184 89 211 0.77 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 K_oxygenase PF13434.1 341 1.3e-05 16.9 0.0 2 2 0.015 1.3 0.4 0.0 134 160 234 260 223 263 0.79 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 UDPG_MGDP_dh_N PF03721.9 185 5.4e-08 25.1 0.2 1 2 0.026 2.3 0.2 0.3 5 32 10 37 7 45 0.86 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 UDPG_MGDP_dh_N PF03721.9 185 5.4e-08 25.1 0.2 2 2 6.6e-09 5.8e-07 21.7 0.0 3 32 165 194 163 215 0.91 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 DAO PF01266.19 358 4.3e-06 18.5 0.1 1 3 0.00098 0.086 4.3 0.0 3 40 9 46 7 107 0.88 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 DAO PF01266.19 358 4.3e-06 18.5 0.1 2 3 0.0001 0.009 7.6 0.0 2 29 165 192 164 195 0.94 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 DAO PF01266.19 358 4.3e-06 18.5 0.1 3 3 0.0022 0.19 3.2 0.0 155 245 211 301 201 346 0.74 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 Pyr_redox PF00070.22 80 3.7e-22 71.3 1.6 1 2 0.0028 0.24 4.6 0.3 3 31 9 37 7 44 0.91 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 Pyr_redox PF00070.22 80 3.7e-22 71.3 1.6 2 2 4.5e-22 3.9e-20 64.8 0.0 1 72 164 235 164 249 0.94 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 TrkA_N PF02254.13 116 2.1e-06 20.5 0.2 1 2 3.4e-06 0.00029 13.5 0.1 2 30 9 37 8 40 0.90 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 TrkA_N PF02254.13 116 2.1e-06 20.5 0.2 2 2 0.0023 0.2 4.4 0.0 3 35 167 199 165 225 0.75 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 6_2 - 450 AlaDh_PNT_C PF01262.16 168 0.00053 12.3 0.0 1 1 1.4e-05 0.0013 11.1 0.0 19 53 161 195 152 218 0.85 # 633 # 1982 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f59b60f0-3e92-4d69-b24b-6adbe8d6cf46 # Target file: checkm_output/bins/pDQ149245.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ149245.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f59b60f0-3e92-4d69-b24b-6adbe8d6cf46 checkm_output/bins/pDQ149245.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:58 2020 # [ok]