# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 449 DUF87 PF01935.12 229 4.8e-05 13.3 0.0 1 1 5.4e-06 7.5e-05 12.7 0.0 24 107 210 280 190 371 0.72 # 3170 # 4516 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_12 - 194 N6_N4_Mtase PF01555.13 231 6.2e-17 51.9 0.1 1 2 0.048 0.67 -0.6 0.4 65 78 65 79 5 106 0.53 # 9574 # 10155 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 1_12 - 194 N6_N4_Mtase PF01555.13 231 6.2e-17 51.9 0.1 2 2 4.4e-18 6.2e-17 51.9 0.1 1 60 124 187 124 192 0.94 # 9574 # 10155 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 1_5 - 449 AAA PF00004.24 132 1.5e-07 21.8 0.1 1 1 2e-08 2.8e-07 21.0 0.1 3 130 214 374 212 376 0.77 # 3170 # 4516 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_12 - 194 Methyltransf_26 PF13659.1 117 0.00014 12.1 0.0 1 1 1.2e-05 0.00017 11.8 0.0 62 114 115 182 43 185 0.79 # 9574 # 10155 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 1_5 - 449 FtsK_SpoIIIE PF01580.13 205 3.1e-11 33.2 0.0 1 1 3.6e-12 5e-11 32.5 0.0 27 204 198 356 173 357 0.81 # 3170 # 4516 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_12 - 194 Cons_hypoth95 PF03602.10 183 7.7e-07 18.8 0.1 1 2 4.1e-07 5.7e-06 15.9 0.0 108 129 118 138 80 165 0.74 # 9574 # 10155 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 1_12 - 194 Cons_hypoth95 PF03602.10 183 7.7e-07 18.8 0.1 2 2 0.03 0.43 0.1 0.0 135 157 165 187 145 192 0.81 # 9574 # 10155 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 1_5 - 449 AAA_10 PF12846.2 304 1.9e-12 37.2 0.4 1 2 4.1e-07 5.8e-06 16.0 0.1 2 45 210 253 209 268 0.90 # 3170 # 4516 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_5 - 449 AAA_10 PF12846.2 304 1.9e-12 37.2 0.4 2 2 3.5e-08 4.9e-07 19.5 0.0 219 295 305 384 275 387 0.78 # 3170 # 4516 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_5 - 449 TrwB_AAD_bind PF10412.4 386 3.6e-05 12.5 0.0 1 2 0.00033 0.0046 5.6 0.0 13 52 207 246 201 266 0.82 # 3170 # 4516 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_5 - 449 TrwB_AAD_bind PF10412.4 386 3.6e-05 12.5 0.0 2 2 0.00073 0.01 4.5 0.0 249 283 322 356 310 385 0.80 # 3170 # 4516 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_12 - 194 MethyltransfD12 PF02086.10 260 6.6e-07 19.1 3.7 1 1 7.1e-08 9.9e-07 18.5 3.7 95 214 40 157 3 177 0.66 # 9574 # 10155 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b25d3b76-ed1c-48dd-8153-d1cf4e19ebf2 # Target file: checkm_output/bins/pDQ149243.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ149243.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b25d3b76-ed1c-48dd-8153-d1cf4e19ebf2 checkm_output/bins/pDQ149243.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:55 2020 # [ok]