# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 261 AAA_22 PF13401.1 131 2.7e-05 13.3 0.3 1 1 4.4e-05 0.00026 10.1 0.3 4 100 25 135 21 177 0.58 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_4 - 261 Zeta_toxin PF06414.7 201 2.4e-05 12.4 0.1 1 1 9.1e-06 5.4e-05 11.2 0.1 14 41 23 50 12 61 0.76 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_6 - 194 AAA_13 PF13166.1 712 1.5e-05 12.4 2.0 1 1 2.8e-06 1.7e-05 12.3 2.0 397 458 64 132 21 144 0.53 # 4160 # 4741 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.582 1_4 - 261 AAA PF00004.24 132 1.1e-07 21.1 0.1 1 1 5.4e-08 3.2e-07 19.6 0.1 2 130 29 197 28 199 0.72 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_4 - 261 FtsK_SpoIIIE PF01580.13 205 7.6e-14 40.5 0.0 1 1 2.4e-14 1.4e-13 39.6 0.0 19 204 6 179 3 180 0.81 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_4 - 261 AAA_19 PF13245.1 76 1.3e-06 17.2 0.9 1 1 5.7e-07 3.4e-06 15.8 0.9 7 42 22 53 18 63 0.74 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_4 - 261 AAA_10 PF12846.2 304 2.7e-16 48.7 0.9 1 2 6.2e-08 3.7e-07 18.7 0.6 4 39 28 64 25 72 0.88 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_4 - 261 AAA_10 PF12846.2 304 2.7e-16 48.7 0.9 2 2 7.7e-11 4.6e-10 28.2 0.0 205 295 92 208 81 214 0.84 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_4 - 261 Zot PF05707.7 193 4.5e-09 24.9 0.1 1 2 0.001 0.0061 4.9 0.1 4 30 29 54 28 60 0.75 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_4 - 261 Zot PF05707.7 193 4.5e-09 24.9 0.1 2 2 9.8e-08 5.9e-07 18.0 0.0 82 146 125 200 82 209 0.83 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_4 - 261 DUF2075 PF09848.4 352 4.2e-07 18.1 0.0 1 1 9.5e-08 5.7e-07 17.6 0.0 4 113 28 152 25 176 0.70 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_4 - 261 DUF853 PF05872.7 504 2e-06 15.2 0.3 1 2 1.7e-05 0.0001 9.6 0.1 16 59 19 63 12 80 0.86 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_4 - 261 DUF853 PF05872.7 504 2e-06 15.2 0.3 2 2 0.00097 0.0058 3.8 0.0 283 331 159 207 121 213 0.72 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_4 - 261 AAA_25 PF13481.1 194 9.8e-07 17.2 2.4 1 1 5.1e-06 3.1e-05 12.4 2.4 36 164 28 145 19 176 0.61 # 1918 # 2700 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_6 - 194 ABC_tran_2 PF12848.2 85 1.6e-05 13.7 0.7 1 1 5.2e-06 3.1e-05 12.8 0.2 25 72 78 126 72 141 0.79 # 4160 # 4741 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.582 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/46e7f5d4-1cdd-4cbd-bc44-b7b6cf2c5a49 # Target file: checkm_output/bins/pDQ103758.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ103758.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/46e7f5d4-1cdd-4cbd-bc44-b7b6cf2c5a49 checkm_output/bins/pDQ103758.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:54 2020 # [ok]