# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_4 - 531 AAA_22 PF13401.1 131 0.0002 12.1 0.3 1 1 3e-05 0.0006 10.6 0.3 7 24 508 525 506 528 0.91 # 1470 # 3062 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.357 2_4 - 531 AAA_17 PF13207.1 121 5.7e-06 17.8 0.6 1 1 7.3e-07 1.5e-05 16.5 0.6 1 19 507 525 507 528 0.91 # 1470 # 3062 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.357 2_4 - 531 Miro PF08477.8 119 0.00013 13.2 0.6 1 2 0.035 0.69 1.1 0.0 33 84 84 134 78 159 0.75 # 1470 # 3062 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.357 2_4 - 531 Miro PF08477.8 119 0.00013 13.2 0.6 2 2 0.00013 0.0025 9.0 0.6 1 22 507 528 507 530 0.92 # 1470 # 3062 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.357 2_4 - 531 AAA_18 PF13238.1 129 6.8e-05 13.9 0.1 1 1 9.6e-06 0.00019 12.4 0.1 1 17 508 524 508 527 0.92 # 1470 # 3062 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.357 2_4 - 531 AAA_29 PF13555.1 62 1.1e-05 15.7 0.4 1 1 1.5e-06 3e-05 14.2 0.1 17 39 500 521 495 523 0.83 # 1470 # 3062 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.357 2_4 - 531 DUF258 PF03193.11 161 5.5e-05 13.0 0.0 1 1 6.8e-06 0.00014 11.7 0.0 13 54 481 524 471 528 0.77 # 1470 # 3062 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.357 2_4 - 531 AAA_33 PF13671.1 143 9.6e-06 16.2 0.3 1 1 9.3e-07 1.9e-05 15.2 0.3 2 20 508 526 508 528 0.90 # 1470 # 3062 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.357 2_4 - 531 ABC_tran PF00005.22 137 6.4e-09 26.9 0.0 1 1 7.8e-10 1.6e-08 25.6 0.0 1 32 495 526 495 529 0.93 # 1470 # 3062 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.357 2_4 - 531 NACHT PF05729.7 166 0.00012 12.4 0.1 1 1 1e-05 0.0002 11.7 0.1 3 21 508 526 506 529 0.89 # 1470 # 3062 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.357 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/46d1378d-914a-4da1-ac5c-d2bc0922a3d8 # Target file: checkm_output/bins/pDQ089807.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ089807.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/46d1378d-914a-4da1-ac5c-d2bc0922a3d8 checkm_output/bins/pDQ089807.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:53 2020 # [ok]