# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_32 - 309 MipZ PF09140.6 261 7.1e-08 24.4 0.2 1 1 1.7e-07 1.4e-05 16.9 0.2 1 122 5 149 5 156 0.54 # 26377 # 27303 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_32 - 309 YhjQ PF06564.7 244 1.3e-07 23.8 0.0 1 1 2.1e-09 1.7e-07 23.4 0.0 10 177 13 184 6 213 0.70 # 26377 # 27303 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_66 - 223 DUF2110 PF09883.4 225 0.00044 12.5 0.1 1 1 8.6e-06 0.00071 11.9 0.1 22 99 104 179 99 193 0.90 # 53254 # 53922 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_74 - 645 DUF87 PF01935.12 229 0.00011 14.6 0.9 1 3 0.067 5.6 -0.7 0.2 118 183 81 125 62 161 0.50 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_74 - 645 DUF87 PF01935.12 229 0.00011 14.6 0.9 2 3 7.5e-05 0.0062 9.0 0.0 28 68 252 291 250 324 0.79 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_74 - 645 DUF87 PF01935.12 229 0.00011 14.6 0.9 3 3 0.012 1 1.7 0.0 143 220 400 470 383 478 0.80 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_58 - 444 AAA_22 PF13401.1 131 2.3e-05 17.2 0.1 1 1 2.4e-06 0.0001 15.1 0.0 2 27 210 235 209 319 0.69 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_74 - 645 AAA_22 PF13401.1 131 0.00088 12.1 0.4 1 1 0.00011 0.0046 9.8 0.0 6 28 249 271 244 296 0.87 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_30 - 274 XS PF03468.9 116 0.00026 13.6 0.2 1 1 6.7e-06 0.00056 12.5 0.2 45 85 78 118 67 132 0.86 # 25205 # 26026 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 1_74 - 645 KAP_NTPase PF07693.9 325 0.00044 11.9 0.1 1 1 1.5e-05 0.0012 10.4 0.0 18 64 245 467 239 529 0.77 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_58 - 444 AAA_17 PF13207.1 121 4e-05 17.1 4.1 1 2 0.0049 0.2 5.1 0.4 48 109 15 94 3 103 0.63 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_58 - 444 AAA_17 PF13207.1 121 4e-05 17.1 4.1 2 2 0.00011 0.0045 10.5 0.1 2 27 215 237 214 331 0.72 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_74 - 645 AAA_17 PF13207.1 121 0.00043 13.8 0.2 1 1 4.4e-05 0.0018 11.7 0.0 3 23 251 271 251 331 0.80 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_74 - 645 Miro PF08477.8 119 0.00017 14.7 0.7 1 1 5.8e-06 0.00049 13.3 0.1 3 62 251 309 250 323 0.79 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_32 - 309 ArsA_ATPase PF02374.10 305 1.1e-05 17.2 1.2 1 1 4.7e-07 3.9e-05 15.4 1.2 8 54 12 59 5 138 0.59 # 26377 # 27303 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_58 - 444 T2SE PF00437.15 272 9.7e-35 112.3 0.0 1 1 1.7e-36 1.4e-34 111.8 0.0 10 264 95 352 86 360 0.87 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_74 - 645 Zeta_toxin PF06414.7 201 4.9e-05 15.1 0.7 1 2 0.0018 0.15 3.7 0.2 97 133 141 178 92 185 0.79 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_74 - 645 Zeta_toxin PF06414.7 201 4.9e-05 15.1 0.7 2 2 4.2e-05 0.0035 9.1 0.0 19 56 250 287 239 300 0.82 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_32 - 309 Fer4_NifH PF00142.13 273 0.00023 13.0 0.4 1 2 9.3e-06 0.00077 11.3 0.1 7 59 12 65 7 89 0.74 # 26377 # 27303 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_32 - 309 Fer4_NifH PF00142.13 273 0.00023 13.0 0.4 2 2 0.078 6.4 -1.6 0.0 192 239 175 221 170 229 0.65 # 26377 # 27303 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_58 - 444 AAA_16 PF13191.1 185 1.2e-05 18.0 0.0 1 1 7.5e-07 6.2e-05 15.7 0.0 22 47 210 235 199 263 0.84 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_74 - 645 AAA_23 PF13476.1 202 0.0034 10.3 8.4 1 2 0.00085 0.07 6.0 0.5 71 173 69 170 20 195 0.51 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_74 - 645 AAA_23 PF13476.1 202 0.0034 10.3 8.4 2 2 0.00017 0.014 8.3 0.8 24 41 252 269 251 366 0.74 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_58 - 444 AAA_18 PF13238.1 129 2.2e-05 17.4 3.4 1 2 0.044 1.8 1.5 0.5 46 94 14 56 4 84 0.65 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_58 - 444 AAA_18 PF13238.1 129 2.2e-05 17.4 3.4 2 2 3.3e-06 0.00014 14.9 0.0 1 42 215 260 215 318 0.66 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_74 - 645 AAA_18 PF13238.1 129 0.0001 15.3 2.4 1 1 3.4e-06 0.00014 14.8 0.0 2 40 251 286 251 325 0.74 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_32 - 309 CbiA PF01656.18 195 2.1e-26 85.2 0.2 1 1 3.2e-28 2.7e-26 84.8 0.2 1 193 7 230 7 231 0.77 # 26377 # 27303 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_74 - 645 AAA_14 PF13173.1 128 9.9e-06 18.2 0.9 1 2 0.0001 0.0042 9.7 0.1 7 87 252 358 249 365 0.71 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_74 - 645 AAA_14 PF13173.1 128 9.9e-06 18.2 0.9 2 2 0.0016 0.067 5.8 0.1 28 78 451 525 432 559 0.54 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_44 - 115 AAA_14 PF13173.1 128 2.2e-05 17.0 0.2 1 1 6e-07 2.5e-05 16.8 0.2 5 73 2 74 1 100 0.66 # 37317 # 37661 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.281 1_74 - 645 AAA_29 PF13555.1 62 0.00061 12.0 0.1 1 1 1.5e-05 0.0013 11.0 0.1 26 40 250 264 239 284 0.80 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_58 - 444 Sigma54_activat PF00158.21 168 4.5e-05 15.6 0.0 1 1 1.2e-06 9.8e-05 14.5 0.0 14 46 204 236 197 257 0.80 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_74 - 645 MMR_HSR1 PF01926.18 116 0.00017 14.2 0.0 1 2 3.3e-05 0.0027 10.3 0.0 4 61 252 307 250 372 0.66 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_74 - 645 MMR_HSR1 PF01926.18 116 0.00017 14.2 0.0 2 2 0.04 3.3 0.4 0.0 44 65 430 470 404 541 0.55 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_68 - 660 TraG-D_C PF12696.2 128 7.1e-33 105.9 0.7 1 1 4.3e-34 1.8e-32 104.6 0.1 1 125 367 482 367 485 0.89 # 54857 # 56836 # 1 # ID=1_68;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_42 - 284 TraG-D_C PF12696.2 128 1.1e-05 18.0 0.0 1 1 1.1e-06 4.5e-05 16.0 0.0 16 85 157 218 144 223 0.86 # 35938 # 36789 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_32 - 309 AAA_31 PF13614.1 157 2.1e-07 23.6 0.5 1 1 5.2e-09 4.4e-07 22.6 0.5 10 153 14 160 12 163 0.67 # 26377 # 27303 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_74 - 645 NTPase_1 PF03266.10 168 6.3e-05 15.4 0.2 1 1 2.6e-06 0.00022 13.6 0.2 3 54 251 302 250 335 0.81 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_58 - 444 ABC_tran PF00005.22 137 0.00016 14.6 0.0 1 1 1e-05 0.00042 13.3 0.0 11 51 212 252 206 354 0.76 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_74 - 645 ABC_tran PF00005.22 137 0.00027 13.9 0.2 1 1 1.8e-05 0.00076 12.4 0.0 16 33 252 269 243 359 0.93 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_74 - 645 AAA_10 PF12846.2 304 1.6e-60 197.7 1.0 1 1 2.2e-62 1.8e-60 197.5 0.1 3 301 249 598 247 602 0.88 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_58 - 444 ResIII PF04851.10 184 0.00035 13.1 0.3 1 1 3e-05 0.0012 11.3 0.2 22 42 199 229 120 250 0.71 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_74 - 645 ResIII PF04851.10 184 0.00038 12.9 1.0 1 1 1.9e-05 0.0008 11.9 0.1 88 170 451 535 423 550 0.66 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_74 - 645 Zot PF05707.7 193 8.5e-07 21.2 0.3 1 2 0.058 4.8 -0.8 0.0 4 15 251 262 250 272 0.89 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_74 - 645 Zot PF05707.7 193 8.5e-07 21.2 0.3 2 2 6.2e-08 5.1e-06 18.7 0.0 34 129 458 556 444 568 0.68 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_58 - 444 DEAD PF00270.24 169 0.00019 13.6 0.0 1 1 4.6e-06 0.00038 12.6 0.0 9 48 206 243 201 398 0.72 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_68 - 660 TrwB_AAD_bind PF10412.4 386 1.1e-14 46.5 0.0 1 2 0.0056 0.23 2.6 0.0 69 163 31 127 23 137 0.82 # 54857 # 56836 # 1 # ID=1_68;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_68 - 660 TrwB_AAD_bind PF10412.4 386 1.1e-14 46.5 0.0 2 2 1e-14 4.3e-13 41.2 0.0 218 364 336 482 319 500 0.79 # 54857 # 56836 # 1 # ID=1_68;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_58 - 444 TrwB_AAD_bind PF10412.4 386 0.00024 12.4 0.0 1 1 1e-05 0.00043 11.6 0.0 15 61 212 258 206 311 0.78 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_68 - 660 T4SS-DNA_transf PF02534.9 469 1.7e-34 111.7 3.4 1 2 8.4e-15 3.5e-13 41.5 0.3 90 258 9 191 1 196 0.71 # 54857 # 56836 # 1 # ID=1_68;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_68 - 660 T4SS-DNA_transf PF02534.9 469 1.7e-34 111.7 3.4 2 2 1e-23 4.3e-22 70.9 0.2 259 432 321 491 302 507 0.90 # 54857 # 56836 # 1 # ID=1_68;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_42 - 284 T4SS-DNA_transf PF02534.9 469 6.9e-10 30.6 0.2 1 2 1.1e-09 4.6e-08 24.6 0.0 48 102 27 81 9 92 0.87 # 35938 # 36789 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_42 - 284 T4SS-DNA_transf PF02534.9 469 6.9e-10 30.6 0.2 2 2 0.0018 0.073 4.2 0.1 285 383 121 212 94 222 0.73 # 35938 # 36789 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_58 - 444 RNA_helicase PF00910.17 107 2.2e-05 17.3 0.0 1 1 8.3e-07 6.9e-05 15.7 0.0 1 90 215 307 215 318 0.77 # 47114 # 48445 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_74 - 645 UPF0079 PF02367.12 123 0.00062 12.1 0.0 1 2 0.0001 0.0086 8.4 0.0 21 41 253 273 249 292 0.88 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_74 - 645 UPF0079 PF02367.12 123 0.00062 12.1 0.0 2 2 0.026 2.2 0.6 0.0 11 31 427 447 422 453 0.88 # 62512 # 64446 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3b02ee7d-11e6-43db-a067-c590eab07aea # Target file: checkm_output/bins/pDQ025752.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pDQ025752.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3b02ee7d-11e6-43db-a067-c590eab07aea checkm_output/bins/pDQ025752.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:54 2020 # [ok]