# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 6_2 - 600 IstB_IS21 PF01695.12 178 4.6e-06 19.7 0.0 1 2 4.5e-06 0.00025 14.1 0.0 46 85 32 71 27 84 0.89 # 429 # 2228 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 6_2 - 600 IstB_IS21 PF01695.12 178 4.6e-06 19.7 0.0 2 2 0.015 0.83 2.6 0.0 96 139 108 159 98 187 0.72 # 429 # 2228 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_28 - 173 IstB_IS21 PF01695.12 178 0.0003 13.8 0.0 1 1 1.1e-05 0.00059 12.9 0.0 45 70 2 27 1 48 0.84 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 IstB_IS21 PF01695.12 178 0.0015 11.6 0.0 1 1 8.6e-05 0.0046 9.9 0.0 50 74 332 355 322 403 0.82 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_28 - 173 CoaE PF01121.15 180 0.0017 11.3 1.2 1 2 0.00056 0.091 5.7 0.1 2 21 6 25 5 31 0.87 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 CoaE PF01121.15 180 0.0017 11.3 1.2 2 2 0.0013 0.21 4.6 0.1 126 150 108 132 97 146 0.83 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 NB-ARC PF00931.17 287 7.1e-05 15.3 0.0 1 1 6.9e-07 0.00011 14.7 0.0 20 47 5 32 1 46 0.86 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 AAA_22 PF13401.1 131 2.3e-08 27.9 0.0 1 1 8.1e-10 6.6e-08 26.4 0.0 6 124 331 470 329 475 0.73 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_28 - 173 AAA_22 PF13401.1 131 1.9e-07 24.9 0.2 1 1 8.4e-09 6.8e-07 23.1 0.2 3 36 3 36 1 169 0.80 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 2_12 - 1176 ATP_bind_1 PF03029.12 238 0.00036 13.7 0.1 1 2 0.0079 1.3 2.1 0.0 1 14 129 142 129 148 0.91 # 10172 # 13699 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 2_12 - 1176 ATP_bind_1 PF03029.12 238 0.00036 13.7 0.1 2 2 6.8e-05 0.011 8.8 0.1 133 180 251 297 217 362 0.62 # 10172 # 13699 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_28 - 173 SRP54 PF00448.17 196 0.00013 15.0 0.1 1 1 1.7e-06 0.00028 13.9 0.1 3 40 6 42 4 50 0.82 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_17 PF13207.1 121 3.1e-14 47.4 0.0 1 1 6.8e-16 3.7e-14 47.2 0.0 1 115 6 129 6 156 0.72 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 AAA_17 PF13207.1 121 0.0013 13.2 0.0 1 1 6.6e-05 0.0036 11.7 0.0 3 77 333 402 331 455 0.51 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 2_12 - 1176 AAA_17 PF13207.1 121 0.0092 10.4 5.0 1 1 0.00025 0.014 9.9 0.9 1 46 126 198 126 378 0.65 # 10172 # 13699 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_28 - 173 Miro PF08477.8 119 0.00016 15.8 0.0 1 1 6.5e-06 0.00052 14.1 0.0 2 33 7 38 6 63 0.85 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 2_12 - 1176 Miro PF08477.8 119 0.00016 15.8 0.2 1 1 3.6e-05 0.0029 11.7 0.2 2 49 127 175 126 285 0.70 # 10172 # 13699 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_28 - 173 PhoH PF02562.11 205 0.00064 12.5 0.6 1 1 7.1e-06 0.0011 11.7 0.1 18 46 3 31 1 36 0.81 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 T2SE PF00437.15 272 0.00013 14.5 0.0 1 1 1.3e-06 0.00021 13.8 0.0 129 152 5 28 1 43 0.84 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 Cytidylate_kin2 PF13189.1 179 2.1e-05 18.1 0.9 1 2 0.00018 0.029 7.8 0.1 1 24 6 29 6 32 0.92 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 Cytidylate_kin2 PF13189.1 179 2.1e-05 18.1 0.9 2 2 6.6e-05 0.011 9.3 0.1 88 147 71 138 28 144 0.69 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 Zeta_toxin PF06414.7 201 2.1e-10 33.6 0.1 1 1 2.8e-12 4.5e-10 32.5 0.1 17 146 5 129 2 147 0.83 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_16 PF13191.1 185 5.7e-06 20.0 0.0 1 1 5.8e-08 9.4e-06 19.3 0.0 23 63 3 44 2 83 0.79 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_23 PF13476.1 202 0.002 12.1 0.8 1 2 3.2e-05 0.0051 10.7 0.6 21 38 6 23 2 25 0.88 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_23 PF13476.1 202 0.002 12.1 0.8 2 2 0.096 16 -0.7 0.0 172 172 121 121 36 164 0.62 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_18 PF13238.1 129 4.9e-16 52.8 0.0 1 1 7.9e-18 6.4e-16 52.4 0.0 1 119 7 132 7 142 0.72 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_24 - 147 AAA_18 PF13238.1 129 6.5e-07 23.3 0.0 1 1 1.1e-08 9.1e-07 22.8 0.0 48 121 22 98 4 108 0.73 # 20018 # 20458 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.356 17_2 - 187 CbiA PF01656.18 195 1.1e-07 25.1 0.1 1 2 1.5e-06 0.00013 15.0 0.0 1 24 3 26 3 31 0.92 # 296 # 856 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.239 17_2 - 187 CbiA PF01656.18 195 1.1e-07 25.1 0.1 2 2 0.00016 0.013 8.4 0.0 95 181 54 134 29 151 0.69 # 296 # 856 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.239 1_28 - 173 CbiA PF01656.18 195 0.0016 11.4 4.2 1 1 0.00021 0.017 8.1 4.2 1 105 6 160 6 172 0.61 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 KaiC PF06745.8 227 6.9e-08 25.4 0.0 1 1 1.7e-08 9.3e-07 21.7 0.0 16 167 326 478 324 511 0.76 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 6_2 - 600 KaiC PF06745.8 227 2.4e-05 17.1 0.1 1 1 2.5e-06 0.00014 14.6 0.0 16 166 30 177 25 215 0.66 # 429 # 2228 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_28 - 173 KaiC PF06745.8 227 5.1e-05 16.0 0.4 1 1 2.5e-06 0.00013 14.7 0.0 18 38 3 23 1 40 0.86 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_14 PF13173.1 128 1.5e-07 25.0 0.0 1 1 1.2e-09 2e-07 24.6 0.0 2 119 4 136 3 145 0.72 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 GvpD PF07088.6 484 0.00013 14.0 0.4 1 2 3.6e-05 0.0029 9.5 0.0 9 26 3 20 1 39 0.88 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 GvpD PF07088.6 484 0.00013 14.0 0.4 2 2 0.0062 0.5 2.1 0.1 31 64 97 129 90 145 0.65 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 GvpD PF07088.6 484 0.0017 10.3 0.0 1 1 4.7e-05 0.0038 9.1 0.0 9 36 328 355 323 414 0.87 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 2_12 - 1176 AAA_29 PF13555.1 62 0.00031 13.9 0.0 1 2 1.9e-05 0.0031 10.7 0.0 16 40 114 141 110 143 0.72 # 10172 # 13699 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 2_12 - 1176 AAA_29 PF13555.1 62 0.00031 13.9 0.0 2 2 0.061 9.9 -0.6 0.0 24 38 841 856 831 865 0.78 # 10172 # 13699 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_28 - 173 AAA PF00004.24 132 7.5e-08 26.2 0.0 1 2 6.3e-09 5.1e-07 23.6 0.0 2 25 8 31 7 83 0.80 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA PF00004.24 132 7.5e-08 26.2 0.0 2 2 0.069 5.6 0.8 0.0 112 131 116 135 96 168 0.66 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 6_2 - 600 AAA PF00004.24 132 0.0009 13.0 0.8 1 1 0.00014 0.011 9.5 0.0 2 105 37 166 36 174 0.56 # 429 # 2228 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 27_1 - 225 RNA_pol_Rpb1_5 PF04998.12 277 0.091 5.5 9.7 1 1 0.00066 0.11 5.3 9.7 117 241 29 152 11 189 0.67 # 3 # 677 # -1 # ID=27_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.201 1_28 - 173 Sigma54_activat PF00158.21 168 0.00059 12.9 0.0 1 1 8.6e-06 0.0014 11.7 0.0 25 51 7 33 1 59 0.67 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 2_12 - 1176 MMR_HSR1 PF01926.18 116 3.8e-05 17.3 0.1 1 1 9.5e-07 0.00015 15.3 0.1 2 105 127 266 126 283 0.61 # 10172 # 13699 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 2_12 - 1176 DUF258 PF03193.11 161 1.5e-05 17.8 0.0 1 1 2.8e-07 4.5e-05 16.3 0.0 24 96 110 182 89 199 0.73 # 10172 # 13699 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_28 - 173 AAA_31 PF13614.1 157 0.0023 11.4 0.9 1 3 0.0012 0.2 5.2 0.1 1 24 5 27 5 36 0.82 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_31 PF13614.1 157 0.0023 11.4 0.9 2 3 0.024 3.9 1.0 0.0 90 122 51 84 32 118 0.68 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_31 PF13614.1 157 0.0023 11.4 0.9 3 3 0.0087 1.4 2.4 0.0 97 130 127 162 119 169 0.84 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 NTPase_1 PF03266.10 168 9.2e-05 15.8 0.2 1 1 1.3e-06 0.00021 14.6 0.2 2 22 7 27 6 37 0.87 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_33 PF13671.1 143 1.9e-15 50.6 0.0 1 1 2.7e-17 2.2e-15 50.4 0.0 2 135 7 143 6 147 0.85 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_24 - 147 AAA_33 PF13671.1 143 1.4e-07 25.0 0.0 1 1 2.2e-09 1.7e-07 24.8 0.0 53 135 27 108 5 112 0.81 # 20018 # 20458 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.356 1_28 - 173 KTI12 PF08433.5 270 4.7e-06 19.5 0.1 1 2 7.5e-08 1.2e-05 18.2 0.0 3 43 6 45 5 87 0.74 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 KTI12 PF08433.5 270 4.7e-06 19.5 0.1 2 2 0.067 11 -1.3 0.0 250 263 126 139 99 166 0.53 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 DnaB_C PF03796.10 259 7.1e-09 28.4 0.0 1 2 6.1e-05 0.0049 9.3 0.0 20 47 330 357 326 365 0.90 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_21 - 624 DnaB_C PF03796.10 259 7.1e-09 28.4 0.0 2 2 3.1e-07 2.5e-05 16.8 0.0 104 186 398 478 382 489 0.81 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 6_2 - 600 DnaB_C PF03796.10 259 3.7e-05 16.3 0.0 1 2 2.7e-06 0.00022 13.7 0.0 13 111 27 130 23 141 0.81 # 429 # 2228 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 6_2 - 600 DnaB_C PF03796.10 259 3.7e-05 16.3 0.0 2 2 0.013 1.1 1.6 0.0 117 185 108 177 96 180 0.76 # 429 # 2228 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_28 - 173 AAA_30 PF13604.1 196 3.4e-05 17.1 0.2 1 1 3.5e-07 5.7e-05 16.3 0.2 17 40 3 26 1 38 0.86 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 ABC_tran PF00005.22 137 2.3e-05 18.3 0.0 1 1 1.7e-07 2.7e-05 18.1 0.1 9 51 2 43 1 146 0.83 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 TIGR03263 TIGR03263 180 2e-05 17.5 0.2 1 2 2.1e-06 0.00034 13.5 0.0 1 36 4 38 4 77 0.84 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 TIGR03263 TIGR03263 180 2e-05 17.5 0.2 2 2 0.0065 1.1 2.2 0.1 107 169 100 161 95 171 0.65 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 ATP-synt_ab PF00006.20 215 0.00016 14.8 0.0 1 1 1.2e-06 0.0002 14.5 0.0 14 72 3 122 1 147 0.81 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 RuvB_N PF05496.7 234 0.00035 13.2 0.2 1 2 5.5e-06 0.00089 11.9 0.0 53 76 7 30 3 40 0.85 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 RuvB_N PF05496.7 234 0.00035 13.2 0.2 2 2 0.079 13 -1.7 0.0 113 131 111 129 104 162 0.62 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_19 PF13245.1 76 1e-07 25.2 0.2 1 1 3e-09 2.4e-07 24.1 0.2 10 31 4 25 1 32 0.85 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 AAA_19 PF13245.1 76 3.8e-06 20.2 0.1 1 1 3.2e-07 2.6e-05 17.6 0.0 11 37 330 356 328 368 0.86 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_28 - 173 Viral_helicase1 PF01443.13 234 0.00015 14.9 0.0 1 1 1.4e-06 0.00022 14.4 0.0 1 60 7 75 7 89 0.66 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 DUF2075 PF09848.4 352 4e-06 19.5 0.1 1 1 9.1e-08 7.4e-06 18.7 0.0 2 26 5 31 4 85 0.84 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 DUF2075 PF09848.4 352 0.0014 11.2 0.0 1 1 2.8e-05 0.0022 10.5 0.0 2 26 330 354 329 429 0.88 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_28 - 173 TIP49 PF06068.8 398 4.2e-05 15.9 0.2 1 2 9.5e-07 0.00015 14.1 0.0 50 75 4 29 2 45 0.82 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 TIP49 PF06068.8 398 4.2e-05 15.9 0.2 2 2 0.029 4.7 -0.7 0.2 141 181 119 159 99 168 0.70 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_11 PF13086.1 236 8.1e-05 15.8 0.2 1 1 1.3e-06 0.00011 15.5 0.2 17 41 4 28 1 170 0.76 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 AAA_11 PF13086.1 236 0.0004 13.6 0.0 1 2 0.01 0.83 2.7 0.0 47 95 228 271 122 297 0.85 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_21 - 624 AAA_11 PF13086.1 236 0.0004 13.6 0.0 2 2 0.00016 0.013 8.6 0.0 19 43 331 355 319 484 0.77 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_28 - 173 CPT PF07931.7 174 2.6e-12 40.3 0.0 1 1 6.2e-14 5e-12 39.3 0.0 1 170 4 170 4 172 0.79 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_24 - 147 CPT PF07931.7 174 3.7e-08 26.7 0.0 1 1 5.6e-10 4.5e-08 26.5 0.0 59 172 20 137 11 139 0.78 # 20018 # 20458 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.356 1_28 - 173 Guanylate_kin PF00625.16 183 0.00044 13.3 1.0 1 2 5.4e-05 0.0087 9.1 0.1 1 27 3 29 3 87 0.75 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 Guanylate_kin PF00625.16 183 0.00044 13.3 1.0 2 2 0.0046 0.75 2.8 0.1 109 180 100 166 95 171 0.62 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 24_2 - 107 Ribosomal_S2 PF00318.15 211 0.00033 13.5 3.3 1 1 2.7e-06 0.00043 13.1 3.3 106 158 25 93 2 100 0.79 # 315 # 635 # -1 # ID=24_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.268 1_28 - 173 ArgK PF03308.11 267 0.0011 11.3 0.1 1 1 1.3e-05 0.002 10.5 0.1 30 52 5 27 2 34 0.86 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 RNA_helicase PF00910.17 107 0.00043 14.1 0.0 1 1 9.7e-06 0.00079 13.2 0.0 1 35 7 42 7 77 0.71 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 RNA_helicase PF00910.17 107 0.0012 12.7 0.0 1 1 8.2e-05 0.0066 10.2 0.0 2 26 333 357 332 378 0.83 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_28 - 173 UPF0079 PF02367.12 123 0.00087 12.5 0.3 1 2 2.5e-05 0.004 10.4 0.0 13 45 2 34 1 45 0.88 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 UPF0079 PF02367.12 123 0.00087 12.5 0.3 2 2 0.051 8.3 -0.3 0.1 64 97 106 142 92 158 0.68 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_24 PF13479.1 213 0.00012 15.3 0.1 1 2 3.1e-06 0.00051 13.2 0.0 5 24 6 25 2 84 0.88 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_24 PF13479.1 213 0.00012 15.3 0.1 2 2 0.025 4 0.5 0.0 64 86 145 167 95 172 0.70 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 NACHT PF05729.7 166 1.5e-05 18.3 0.0 1 2 0.056 4.5 0.5 0.0 42 75 5 34 3 44 0.79 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_21 - 624 NACHT PF05729.7 166 1.5e-05 18.3 0.0 2 2 2.6e-06 0.00021 14.6 0.0 2 31 331 360 330 430 0.88 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_28 - 173 NACHT PF05729.7 166 0.00057 13.2 0.0 1 1 1.2e-05 0.00098 12.4 0.0 1 29 5 33 5 64 0.75 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 AAA_25 PF13481.1 194 6.5e-31 100.8 0.0 1 1 2.1e-32 1.2e-30 100.0 0.0 10 193 305 475 297 476 0.86 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 6_2 - 600 AAA_25 PF13481.1 194 1.4e-21 70.4 0.0 1 1 4.8e-23 2.6e-21 69.5 0.0 30 193 30 175 27 176 0.89 # 429 # 2228 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_28 - 173 AAA_25 PF13481.1 194 4e-05 16.6 0.7 1 1 1.8e-06 9.8e-05 15.4 0.5 32 55 3 26 1 111 0.94 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 IPT PF01745.11 233 0.0009 12.0 0.2 1 2 1.4e-05 0.0022 10.7 0.1 3 25 6 28 4 42 0.91 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 IPT PF01745.11 233 0.0009 12.0 0.2 2 2 0.083 13 -1.6 0.0 193 211 126 144 81 156 0.63 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 AAA_28 PF13521.1 163 5.1e-08 26.6 0.1 1 1 6.7e-10 1.1e-07 25.5 0.0 2 65 7 74 6 86 0.69 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 624 AAA_5 PF07728.9 139 0.00017 14.9 0.0 1 1 3.9e-06 0.00062 13.1 0.0 3 26 333 357 332 405 0.83 # 16749 # 18620 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_28 - 173 APS_kinase PF01583.15 157 2.4e-05 17.6 0.1 1 2 4.8e-06 0.00077 12.7 0.0 1 47 3 47 3 94 0.63 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 173 APS_kinase PF01583.15 157 2.4e-05 17.6 0.1 2 2 0.0044 0.71 3.1 0.0 45 76 119 150 102 168 0.86 # 23450 # 23968 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.368 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e302e064-34c2-4d4b-af00-c922f538903d # Target file: checkm_output/bins/pCP018901.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP018901.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e302e064-34c2-4d4b-af00-c922f538903d checkm_output/bins/pCP018901.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:44 2020 # [ok]