# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 598 IstB_IS21 PF01695.12 178 2.7e-06 19.0 0.0 1 2 1.1e-06 6e-05 14.6 0.0 46 85 32 71 27 92 0.86 # 2715 # 4508 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_6 - 598 IstB_IS21 PF01695.12 178 2.7e-06 19.0 0.0 2 2 0.013 0.73 1.3 0.0 98 140 110 160 98 187 0.71 # 2715 # 4508 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_28 - 640 AIG1 PF04548.11 212 0.00015 13.0 0.0 1 1 6.6e-06 0.00037 11.7 0.0 32 62 51 81 43 108 0.84 # 21929 # 23848 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_48 - 141 SSB PF00436.20 104 2.4e-28 90.2 0.1 1 1 5.3e-30 3e-28 89.9 0.1 1 102 1 102 1 104 0.98 # 40054 # 40476 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_52 - 652 DUF87 PF01935.12 229 1.4e-05 17.0 0.6 1 2 9.8e-05 0.0028 9.6 0.0 26 49 277 300 268 311 0.84 # 42989 # 44944 # -1 # ID=1_52;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 1_52 - 652 DUF87 PF01935.12 229 1.4e-05 17.0 0.6 2 2 0.0071 0.2 3.5 0.2 101 165 368 429 361 462 0.74 # 42989 # 44944 # -1 # ID=1_52;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 1_40 - 338 DUF87 PF01935.12 229 5.3e-05 15.2 0.0 1 1 3.5e-06 9.9e-05 14.3 0.0 27 48 164 185 142 193 0.84 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 Septin PF00735.13 281 4.2e-05 14.7 0.0 1 1 2.4e-06 6.8e-05 14.0 0.0 6 29 162 185 158 209 0.80 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_28 - 640 Septin PF00735.13 281 0.00015 12.9 0.1 1 1 9.7e-06 0.00027 12.0 0.1 7 77 6 82 3 91 0.68 # 21929 # 23848 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_40 - 338 AAA_22 PF13401.1 131 9.8e-06 17.9 0.0 1 1 3.9e-07 2.2e-05 16.7 0.0 4 42 160 209 156 260 0.71 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 ATP_bind_1 PF03029.12 238 0.00013 13.6 0.0 1 1 3.8e-06 0.00021 12.9 0.0 1 23 165 187 165 193 0.87 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 AAA_17 PF13207.1 121 5e-06 19.5 0.1 1 1 2.3e-07 1.3e-05 18.1 0.1 2 49 163 207 162 303 0.82 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_15 - 94 AAA_21 PF13304.1 303 0.0014 10.6 11.7 1 1 3e-05 0.0017 10.4 11.7 80 162 6 88 2 92 0.93 # 8839 # 9120 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.195 1_28 - 640 Miro PF08477.8 119 9.7e-06 18.2 0.0 1 1 4.4e-07 2.4e-05 16.9 0.0 9 119 13 131 5 131 0.75 # 21929 # 23848 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_40 - 338 MobB PF03205.9 140 2.4e-05 16.2 0.4 1 2 2.3e-06 0.00013 13.8 0.0 3 27 163 187 161 199 0.81 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 MobB PF03205.9 140 2.4e-05 16.2 0.4 2 2 0.065 3.7 -0.6 0.1 20 44 296 320 293 322 0.81 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_19 - 1933 Helicase_C PF00271.26 78 1.5e-07 23.4 0.3 1 2 0.055 3.1 -0.1 0.0 14 40 1079 1105 1065 1107 0.84 # 12005 # 17803 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_19 - 1933 Helicase_C PF00271.26 78 1.5e-07 23.4 0.3 2 2 4.2e-08 2.3e-06 19.5 0.0 12 78 1516 1584 1509 1584 0.86 # 12005 # 17803 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_40 - 338 T2SE PF00437.15 272 7.2e-64 207.3 0.0 1 1 1.5e-65 8.3e-64 207.1 0.0 6 269 14 312 9 315 0.95 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 Zeta_toxin PF06414.7 201 7.2e-05 14.0 0.0 1 1 2.2e-06 0.00012 13.3 0.0 17 49 161 194 147 218 0.85 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 AAA_16 PF13191.1 185 2.9e-05 16.2 0.0 1 1 7.1e-07 4e-05 15.7 0.0 24 81 160 234 147 306 0.76 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 AAA_23 PF13476.1 202 0.001 11.5 5.1 1 1 9.6e-06 0.00054 12.4 2.1 22 37 163 178 141 185 0.89 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 AAA_18 PF13238.1 129 7.3e-05 15.2 0.1 1 1 5.1e-06 0.00028 13.3 0.0 1 18 163 180 163 227 0.76 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_21 - 187 CbiA PF01656.18 195 2e-08 25.9 0.1 1 2 6.4e-07 3.6e-05 15.3 0.0 1 24 3 26 3 32 0.92 # 18119 # 18679 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 1_21 - 187 CbiA PF01656.18 195 2e-08 25.9 0.1 2 2 5.1e-05 0.0029 9.1 0.0 95 178 54 131 29 151 0.68 # 18119 # 18679 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 1_6 - 598 KaiC PF06745.8 227 2.2e-05 15.7 0.0 1 2 1.9e-06 0.00011 13.5 0.0 16 71 30 84 23 214 0.85 # 2715 # 4508 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_6 - 598 KaiC PF06745.8 227 2.2e-05 15.7 0.0 2 2 0.086 4.8 -1.7 0.0 133 156 329 352 322 358 0.85 # 2715 # 4508 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_40 - 338 AAA_14 PF13173.1 128 1e-05 17.6 0.1 1 2 0.028 1.6 0.8 0.0 70 102 35 66 11 74 0.85 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 AAA_14 PF13173.1 128 1e-05 17.6 0.1 2 2 2.3e-06 0.00013 14.0 0.0 2 54 160 211 159 254 0.75 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 GvpD PF07088.6 484 0.00028 11.3 0.0 1 1 6.5e-06 0.00037 10.9 0.0 8 42 158 192 150 258 0.83 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_28 - 640 TIGR03594 TIGR03594 432 3.2e-08 24.7 0.3 1 3 0.044 2.5 -1.3 0.0 176 211 4 42 2 50 0.74 # 21929 # 23848 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_28 - 640 TIGR03594 TIGR03594 432 3.2e-08 24.7 0.3 2 3 2e-08 1.1e-06 19.6 0.1 31 123 51 135 47 154 0.87 # 21929 # 23848 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_28 - 640 TIGR03594 TIGR03594 432 3.2e-08 24.7 0.3 3 3 0.006 0.34 1.5 0.0 304 347 196 239 187 265 0.79 # 21929 # 23848 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_40 - 338 AAA_29 PF13555.1 62 2.3e-05 16.0 0.0 1 1 9.4e-07 5.3e-05 14.9 0.0 22 40 159 177 140 184 0.81 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_6 - 598 AAA PF00004.24 132 6e-05 15.4 0.2 1 2 2.5e-05 0.0014 10.9 0.0 2 105 37 166 36 177 0.66 # 2715 # 4508 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_6 - 598 AAA PF00004.24 132 6e-05 15.4 0.2 2 2 0.025 1.4 1.2 0.0 47 74 411 434 377 459 0.70 # 2715 # 4508 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_40 - 338 Sigma54_activat PF00158.21 168 8.3e-05 14.2 0.0 1 1 3.2e-06 0.00018 13.1 0.0 14 43 152 181 143 198 0.84 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_28 - 640 MMR_HSR1 PF01926.18 116 2.4e-08 26.1 0.1 1 1 8.6e-10 4.8e-08 25.1 0.1 4 116 8 129 5 129 0.68 # 21929 # 23848 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_38 - 604 TraG-D_C PF12696.2 128 2.7e-28 90.5 0.0 1 1 1.9e-29 1e-27 88.6 0.0 2 127 406 528 405 529 0.89 # 31532 # 33343 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_40 - 338 NTPase_1 PF03266.10 168 0.00038 12.3 0.1 1 1 1.4e-05 0.00076 11.3 0.1 1 23 162 184 162 192 0.88 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_6 - 598 DnaB_C PF03796.10 259 2.9e-06 18.4 0.0 1 2 2.1e-07 1.2e-05 16.3 0.0 13 117 27 136 23 156 0.79 # 2715 # 4508 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_6 - 598 DnaB_C PF03796.10 259 2.9e-06 18.4 0.0 2 2 0.011 0.63 0.9 0.0 129 185 119 177 101 179 0.77 # 2715 # 4508 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_19 - 1933 Methyltransf_26 PF13659.1 117 3.1e-13 41.9 0.0 1 1 1.7e-14 9.6e-13 40.3 0.0 3 116 312 422 310 423 0.84 # 12005 # 17803 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_40 - 338 AAA_30 PF13604.1 196 0.00079 11.1 0.0 1 1 2.2e-05 0.0012 10.5 0.0 12 44 155 186 146 193 0.72 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 FtsK_SpoIIIE PF01580.13 205 6.3e-08 24.4 0.0 1 1 3.8e-09 1.1e-07 23.6 0.0 36 59 154 181 134 187 0.77 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_52 - 652 FtsK_SpoIIIE PF01580.13 205 3.7e-05 15.3 0.0 1 1 2.8e-06 7.8e-05 14.3 0.0 39 63 268 299 242 305 0.74 # 42989 # 44944 # -1 # ID=1_52;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 1_19 - 1933 MTS PF05175.9 170 2.8e-05 15.6 0.0 1 1 1.4e-06 7.8e-05 14.2 0.0 32 142 310 423 302 443 0.75 # 12005 # 17803 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_40 - 338 ABC_tran PF00005.22 137 2.3e-07 23.3 0.0 1 1 8.4e-09 4.7e-07 22.3 0.0 5 50 154 200 152 226 0.84 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_19 - 1933 Eco57I PF07669.6 106 3.8e-08 25.8 0.3 1 1 6.8e-10 3.8e-08 25.8 0.3 3 104 372 473 370 475 0.84 # 12005 # 17803 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_52 - 652 AAA_10 PF12846.2 304 3.1e-39 127.2 0.3 1 1 2.7e-40 5e-39 126.5 0.3 2 297 275 568 274 574 0.83 # 42989 # 44944 # -1 # ID=1_52;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 1_40 - 338 AAA_10 PF12846.2 304 2.7e-06 19.0 0.0 1 1 1.8e-07 3.4e-06 18.7 0.0 2 37 161 196 160 333 0.74 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_38 - 604 AAA_10 PF12846.2 304 0.00011 13.7 0.0 1 1 1e-05 0.00019 13.0 0.0 32 302 154 490 127 491 0.75 # 31532 # 33343 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_19 - 1933 ResIII PF04851.10 184 2.9e-10 32.3 9.7 1 1 1e-11 2.9e-10 32.3 9.7 2 161 1000 1196 999 1243 0.57 # 12005 # 17803 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_40 - 338 ResIII PF04851.10 184 3.9e-05 15.6 0.0 1 1 2.9e-06 8e-05 14.6 0.0 3 64 145 201 143 237 0.72 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_28 - 640 GTP_EFTU_D2 PF03144.20 74 1.5e-09 30.0 0.0 1 1 5.6e-11 3.2e-09 29.0 0.0 3 60 265 316 263 323 0.90 # 21929 # 23848 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_19 - 1933 DEAD PF00270.24 169 1.2e-08 26.7 0.7 1 2 6.2e-08 1.7e-06 19.7 0.1 2 107 1004 1110 1003 1245 0.78 # 12005 # 17803 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_19 - 1933 DEAD PF00270.24 169 1.2e-08 26.7 0.7 2 2 0.069 1.9 -0.0 0.0 120 148 1886 1919 1844 1926 0.70 # 12005 # 17803 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_40 - 338 DEAD PF00270.24 169 3.1e-06 18.8 0.0 1 1 1.9e-07 5.3e-06 18.1 0.0 2 69 148 212 147 243 0.71 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_38 - 604 TrwB_AAD_bind PF10412.4 386 6.1e-21 66.4 0.0 1 2 2.5e-06 7e-05 13.6 0.0 39 150 147 270 124 297 0.71 # 31532 # 33343 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_38 - 604 TrwB_AAD_bind PF10412.4 386 6.1e-21 66.4 0.0 2 2 1.2e-17 3.3e-16 50.9 0.0 185 380 345 542 306 544 0.84 # 31532 # 33343 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_40 - 338 TrwB_AAD_bind PF10412.4 386 0.00011 13.0 0.0 1 1 6.2e-06 0.00017 12.3 0.0 16 42 161 187 154 217 0.85 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_38 - 604 T4SS-DNA_transf PF02534.9 469 1.6e-108 355.3 0.1 1 1 3.8e-110 2.1e-108 354.9 0.1 3 460 94 563 82 571 0.88 # 31532 # 33343 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_28 - 640 GTP_EFTU PF00009.22 188 1.2e-59 193.0 0.4 1 1 3.2e-61 1.8e-59 192.4 0.4 2 185 2 237 1 240 0.92 # 21929 # 23848 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_40 - 338 RNA_helicase PF00910.17 107 0.00014 14.1 0.0 1 1 6e-06 0.00034 12.9 0.0 1 23 163 185 163 224 0.79 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 UPF0079 PF02367.12 123 1.8e-05 16.5 0.0 1 1 6e-07 3.4e-05 15.6 0.0 8 42 153 187 147 205 0.85 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_28 - 640 EFG_IV PF03764.13 120 7.1e-26 82.3 0.0 1 1 3.5e-27 2e-25 80.8 0.0 1 120 416 532 416 532 0.98 # 21929 # 23848 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.403 1_40 - 338 AAA_24 PF13479.1 213 0.00013 13.7 0.0 1 1 5e-06 0.00028 12.6 0.0 5 33 162 188 159 217 0.84 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_40 - 338 NACHT PF05729.7 166 2e-05 16.4 0.0 1 1 6.1e-07 3.4e-05 15.6 0.0 3 22 163 182 161 188 0.89 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_6 - 598 AAA_25 PF13481.1 194 6.7e-22 69.9 0.0 1 1 4.5e-23 1.3e-21 69.0 0.0 30 193 30 175 20 176 0.90 # 2715 # 4508 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_40 - 338 AAA_25 PF13481.1 194 0.00015 13.3 0.0 1 1 8.3e-06 0.00023 12.7 0.0 29 56 157 183 130 200 0.76 # 33903 # 34916 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_19 - 1933 SNF2_N PF00176.18 299 4.5e-21 66.9 4.6 1 3 1.7e-22 9.6e-21 65.8 0.4 24 204 1015 1275 955 1336 0.76 # 12005 # 17803 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_19 - 1933 SNF2_N PF00176.18 299 4.5e-21 66.9 4.6 2 3 0.011 0.61 0.8 0.1 194 286 1462 1558 1444 1567 0.73 # 12005 # 17803 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_19 - 1933 SNF2_N PF00176.18 299 4.5e-21 66.9 4.6 3 3 0.063 3.5 -1.7 0.0 123 151 1873 1902 1837 1921 0.75 # 12005 # 17803 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ded685aa-ad6a-43d5-b6d0-c5a6287b114f # Target file: checkm_output/bins/pCP017866.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP017866.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ded685aa-ad6a-43d5-b6d0-c5a6287b114f checkm_output/bins/pCP017866.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:37 2020 # [ok]