# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_12 - 1176 ATP_bind_1 PF03029.12 238 0.00019 13.7 0.1 1 2 0.0079 0.67 2.1 0.0 1 14 129 142 129 148 0.91 # 11783 # 15310 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_12 - 1176 ATP_bind_1 PF03029.12 238 0.00019 13.7 0.1 2 2 6.8e-05 0.0057 8.8 0.1 133 180 251 297 217 362 0.62 # 11783 # 15310 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_12 - 1176 AAA_17 PF13207.1 121 0.0056 10.2 5.1 1 1 7.8e-05 0.0067 10.0 0.4 1 19 126 144 126 270 0.50 # 11783 # 15310 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_12 - 1176 Miro PF08477.8 119 8.5e-05 15.7 0.2 1 1 1.8e-05 0.0015 11.7 0.2 2 49 127 175 126 285 0.70 # 11783 # 15310 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 5_5 - 187 CbiA PF01656.18 195 1e-07 24.2 0.1 1 2 1.4e-06 0.00012 14.2 0.0 1 24 3 26 3 30 0.92 # 3364 # 3924 # 1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.241 5_5 - 187 CbiA PF01656.18 195 1e-07 24.2 0.1 2 2 8.1e-05 0.0069 8.4 0.0 95 181 54 134 29 151 0.69 # 3364 # 3924 # 1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.241 2_12 - 1176 AAA_29 PF13555.1 62 0.00016 13.9 0.0 1 2 1.9e-05 0.0016 10.7 0.0 16 40 114 141 110 143 0.72 # 11783 # 15310 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_12 - 1176 AAA_29 PF13555.1 62 0.00016 13.9 0.0 2 2 0.063 5.3 -0.6 0.0 24 38 841 856 831 863 0.78 # 11783 # 15310 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_12 - 1176 MMR_HSR1 PF01926.18 116 1.9e-05 17.3 0.1 1 1 9.5e-07 8e-05 15.3 0.1 2 105 127 266 126 283 0.61 # 11783 # 15310 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_12 - 1176 DUF258 PF03193.11 161 7.9e-06 17.8 0.0 1 1 2.8e-07 2.4e-05 16.3 0.0 24 96 110 182 89 199 0.73 # 11783 # 15310 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 3_11 - 260 RRF PF01765.14 165 0.0033 9.6 6.3 1 2 4e-05 0.0034 9.5 0.2 128 155 165 192 155 199 0.84 # 9859 # 10638 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 3_11 - 260 RRF PF01765.14 165 0.0033 9.6 6.3 2 2 0.0068 0.58 2.3 1.4 122 149 215 242 207 256 0.77 # 9859 # 10638 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5014bd68-32b8-4596-b6cb-3a090461a0bf # Target file: checkm_output/bins/pCP017417.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP017417.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5014bd68-32b8-4596-b6cb-3a090461a0bf checkm_output/bins/pCP017417.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:32 2020 # [ok]