# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 100 Trm56 PF01994.11 121 2.7e-05 12.9 0.0 1 1 5.7e-06 3.4e-05 12.6 0.0 4 48 28 72 26 94 0.87 # 3663 # 3962 # -1 # ID=1_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.267 1_5 - 453 Val_tRNA-synt_C PF10458.4 66 3.3e-06 16.2 4.7 1 2 0.00075 0.0045 6.1 0.4 1 16 257 272 257 278 0.86 # 2315 # 3673 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=9bp;gc_cont=0.325 1_5 - 453 Val_tRNA-synt_C PF10458.4 66 3.3e-06 16.2 4.7 2 2 3.8e-05 0.00023 10.3 0.4 3 29 422 448 420 450 0.91 # 2315 # 3673 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=9bp;gc_cont=0.325 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d94a943b-a2ff-44e1-8713-3ef22dc4d37f # Target file: checkm_output/bins/pCP007002.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP007002.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d94a943b-a2ff-44e1-8713-3ef22dc4d37f checkm_output/bins/pCP007002.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:07 2020 # [ok]