# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 315 Mg_chelatase PF01078.16 207 0.00034 11.3 0.0 1 1 1.5e-05 0.00058 10.6 0.0 18 48 138 168 126 225 0.84 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_34 - 180 SRP_SPB PF02978.14 104 0.00032 12.5 2.2 1 2 8.4e-05 0.0032 9.3 0.5 42 78 19 55 3 64 0.82 # 31859 # 32398 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.235 1_34 - 180 SRP_SPB PF02978.14 104 0.00032 12.5 2.2 2 2 0.01 0.38 2.7 0.0 3 28 109 135 107 168 0.78 # 31859 # 32398 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.235 1_12 - 315 IstB_IS21 PF01695.12 178 0.00024 12.1 0.0 1 1 1.1e-05 0.00042 11.3 0.0 43 63 138 158 107 163 0.79 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_20 - 52 SSB PF00436.20 104 2.9e-09 28.3 0.0 1 1 8.1e-11 3.1e-09 28.3 0.0 4 38 5 39 2 49 0.88 # 17566 # 17721 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_12 - 315 DUF87 PF01935.12 229 4.6e-05 14.8 0.0 1 1 2e-06 7.7e-05 14.1 0.0 26 45 145 164 122 174 0.90 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 Septin PF00735.13 281 5e-05 13.9 0.0 1 1 2e-06 7.5e-05 13.3 0.0 6 26 144 164 141 183 0.89 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 AAA_22 PF13401.1 131 6.2e-07 21.2 0.0 1 1 5.7e-08 1.1e-06 20.4 0.0 4 37 142 186 139 224 0.71 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_4 - 918 AAA_22 PF13401.1 131 9.1e-05 14.2 0.0 1 1 1.9e-05 0.00036 12.2 0.0 7 37 544 582 542 678 0.82 # 1611 # 4364 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 1_12 - 315 ATP_bind_1 PF03029.12 238 5e-05 14.4 0.0 1 1 2.4e-06 8.9e-05 13.6 0.0 1 24 147 170 147 175 0.87 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 AAA_21 PF13304.1 303 5.2e-05 14.8 0.0 1 1 2.4e-06 9e-05 14.0 0.0 2 59 145 183 144 209 0.73 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 Miro PF08477.8 119 0.00019 13.5 0.1 1 1 8.6e-06 0.00033 12.7 0.1 2 20 145 163 144 236 0.84 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 MobB PF03205.9 140 5.7e-05 14.4 0.2 1 1 4.2e-06 0.00016 13.0 0.0 3 24 145 166 143 179 0.85 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_23 - 1985 Helicase_C PF00271.26 78 3.5e-08 24.9 0.8 1 2 0.092 3.5 -0.8 0.0 16 40 1117 1141 1105 1147 0.85 # 19351 # 25305 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_23 - 1985 Helicase_C PF00271.26 78 3.5e-08 24.9 0.8 2 2 7.5e-09 2.9e-07 21.9 0.1 11 78 1554 1623 1547 1623 0.84 # 19351 # 25305 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_12 - 315 T2SE PF00437.15 272 7.4e-64 206.7 0.0 1 1 2.2e-65 8.4e-64 206.5 0.0 6 269 18 294 13 297 0.92 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 AAA_16 PF13191.1 185 7.7e-06 17.5 0.0 1 1 5.9e-07 1.1e-05 17.0 0.0 19 63 139 186 127 239 0.75 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_4 - 918 AAA_16 PF13191.1 185 0.0003 12.3 0.0 1 1 4e-05 0.00076 11.0 0.0 26 51 543 568 531 585 0.90 # 1611 # 4364 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 1_12 - 315 AAA_23 PF13476.1 202 2.8e-05 16.0 0.1 1 1 1.3e-06 5e-05 15.2 0.1 22 37 145 160 124 163 0.83 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_25 - 190 CbiA PF01656.18 195 6.3e-10 30.3 1.1 1 2 4.9e-07 1.9e-05 15.7 0.1 1 24 3 26 3 30 0.93 # 25607 # 26176 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 190 CbiA PF01656.18 195 6.3e-10 30.3 1.1 2 2 2e-06 7.5e-05 13.7 0.1 85 171 46 126 32 150 0.76 # 25607 # 26176 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_12 - 315 KaiC PF06745.8 227 0.00031 11.4 1.0 1 1 1.1e-05 0.00043 10.9 0.1 11 37 134 160 128 164 0.85 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 AAA_14 PF13173.1 128 0.00021 12.7 0.0 1 1 1.1e-05 0.00042 11.8 0.0 2 34 142 180 141 254 0.69 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 GvpD PF07088.6 484 6.7e-05 12.8 0.0 1 1 2.2e-06 8.2e-05 12.5 0.0 8 63 140 200 134 310 0.67 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 AAA_29 PF13555.1 62 5e-06 17.6 0.0 1 1 3.5e-07 1.3e-05 16.2 0.0 21 40 140 159 121 165 0.81 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 Sigma54_activat PF00158.21 168 0.00031 11.8 0.0 1 1 1.8e-05 0.00067 10.7 0.0 13 43 133 163 125 176 0.81 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 DUF258 PF03193.11 161 0.00014 12.6 0.0 1 1 5.8e-06 0.00022 12.0 0.0 22 57 128 164 112 195 0.85 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_13 - 634 TraG-D_C PF12696.2 128 2e-28 90.4 0.0 1 1 1.1e-29 4.2e-28 89.4 0.0 1 127 403 522 403 523 0.89 # 10289 # 12190 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.371 1_25 - 190 AAA_31 PF13614.1 157 2.2e-05 15.9 0.1 1 2 2.3e-05 0.00088 10.8 0.0 3 25 3 25 2 29 0.94 # 25607 # 26176 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 190 AAA_31 PF13614.1 157 2.2e-05 15.9 0.1 2 2 0.0072 0.27 2.7 0.0 121 151 57 86 33 91 0.85 # 25607 # 26176 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_23 - 1985 Methyltransf_26 PF13659.1 117 1.5e-11 35.9 0.0 1 1 8.6e-13 3.3e-11 34.9 0.0 3 116 345 453 343 454 0.83 # 19351 # 25305 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_12 - 315 AAA_30 PF13604.1 196 9.6e-05 13.5 0.0 1 1 5.6e-06 0.00021 12.4 0.0 2 42 127 166 126 175 0.80 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 FtsK_SpoIIIE PF01580.13 205 5.6e-09 27.3 0.1 1 1 7.7e-10 1.5e-08 25.9 0.0 36 59 135 163 122 166 0.77 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_4 - 918 FtsK_SpoIIIE PF01580.13 205 1.8e-05 15.8 0.0 1 1 1.9e-06 3.7e-05 14.8 0.0 27 66 518 569 495 575 0.82 # 1611 # 4364 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 1_23 - 1985 MTS PF05175.9 170 0.00021 12.2 0.0 1 1 1.5e-05 0.00058 10.8 0.0 92 144 396 456 338 473 0.75 # 19351 # 25305 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_12 - 315 ABC_tran PF00005.22 137 5.8e-07 21.4 0.0 1 1 2.7e-08 1e-06 20.6 0.0 8 45 139 176 134 201 0.83 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_23 - 1985 Eco57I PF07669.6 106 1.5e-13 42.6 0.2 1 1 3.7e-14 1.4e-12 39.5 0.1 2 103 402 502 401 505 0.86 # 19351 # 25305 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_4 - 918 AAA_10 PF12846.2 304 1.9e-44 143.8 0.4 1 1 1.6e-45 3.1e-44 143.1 0.4 2 303 542 842 541 843 0.91 # 1611 # 4364 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 1_12 - 315 AAA_10 PF12846.2 304 1.7e-06 19.1 0.0 1 1 1.4e-07 2.7e-06 18.5 0.0 2 24 143 165 142 181 0.82 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 DEAD PF00270.24 169 2e-05 15.7 0.0 1 1 1.8e-06 3.4e-05 14.9 0.0 11 31 139 159 129 227 0.78 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_23 - 1985 DEAD PF00270.24 169 2.6e-05 15.3 0.1 1 1 6.1e-05 0.0012 9.9 0.1 3 144 1041 1245 1039 1287 0.63 # 19351 # 25305 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_13 - 634 TrwB_AAD_bind PF10412.4 386 2.6e-19 60.5 0.0 1 2 5.2e-06 9.8e-05 12.5 0.0 54 123 162 240 122 249 0.74 # 10289 # 12190 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.371 1_13 - 634 TrwB_AAD_bind PF10412.4 386 2.6e-19 60.5 0.0 2 2 3.8e-16 7.2e-15 45.9 0.0 185 369 343 525 304 538 0.79 # 10289 # 12190 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.371 1_12 - 315 TrwB_AAD_bind PF10412.4 386 4.8e-05 13.6 0.0 1 1 3.8e-06 7.3e-05 13.0 0.0 13 39 140 166 129 179 0.82 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_13 - 634 T4SS-DNA_transf PF02534.9 469 3.1e-106 347.2 0.0 1 1 1.2e-107 4.6e-106 346.6 0.0 5 460 93 557 83 565 0.85 # 10289 # 12190 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.371 1_12 - 315 Pox_A32 PF04665.7 241 7.7e-06 16.8 1.5 1 2 5.6e-07 2.1e-05 15.4 0.0 14 35 143 164 134 175 0.86 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 Pox_A32 PF04665.7 241 7.7e-06 16.8 1.5 2 2 0.033 1.3 -0.2 0.6 157 195 265 303 254 308 0.78 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 RNA_helicase PF00910.17 107 7.9e-05 14.4 0.0 1 1 5.2e-06 0.0002 13.1 0.0 2 20 146 164 145 193 0.86 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 UPF0079 PF02367.12 123 1.1e-05 16.6 0.0 1 1 5.2e-07 2e-05 15.8 0.0 5 38 132 165 129 175 0.85 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 AAA_24 PF13479.1 213 2.2e-05 15.6 0.3 1 2 2.6e-06 9.8e-05 13.5 0.0 4 24 143 164 110 182 0.91 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 AAA_24 PF13479.1 213 2.2e-05 15.6 0.3 2 2 0.057 2.2 -0.7 0.1 148 187 269 304 264 310 0.71 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_12 - 315 NACHT PF05729.7 166 4.1e-05 14.8 0.0 1 1 1.7e-06 6.6e-05 14.1 0.0 3 22 145 164 143 168 0.90 # 9348 # 10292 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_23 - 1985 SNF2_N PF00176.18 299 1.6e-18 58.0 0.5 1 1 1.1e-19 4.2e-18 56.6 0.0 25 201 1052 1311 1037 1337 0.80 # 19351 # 25305 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/840d783f-0f84-4e52-a972-7109a0f1d9f6 # Target file: checkm_output/bins/pCP007001.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP007001.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/840d783f-0f84-4e52-a972-7109a0f1d9f6 checkm_output/bins/pCP007001.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:08 2020 # [ok]