# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 822 cobW PF02492.14 178 0.00021 12.1 0.0 1 1 1.3e-05 0.00043 11.1 0.0 3 21 457 475 455 487 0.84 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_29 - 229 Thymidylate_kin PF02223.12 186 7.8e-06 16.7 0.2 1 2 9.2e-06 0.0003 11.5 0.0 6 44 11 51 10 62 0.77 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_29 - 229 Thymidylate_kin PF02223.12 186 7.8e-06 16.7 0.2 2 2 0.004 0.13 2.9 0.3 133 169 187 225 154 228 0.73 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_5 - 313 ABC_ATPase PF09818.4 448 6.1e-06 16.3 0.1 1 1 2.8e-07 9.4e-06 15.7 0.1 218 301 116 199 104 207 0.84 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_16 - 148 FeoB_N PF02421.13 156 0.00011 12.9 1.2 1 1 4.6e-06 0.00015 12.4 1.2 13 94 56 135 47 139 0.92 # 12996 # 13439 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.241 1_5 - 313 IstB_IS21 PF01695.12 178 3.4e-06 17.9 0.0 1 1 1.8e-07 6e-06 17.1 0.0 38 81 136 179 110 208 0.67 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_29 - 229 MipZ PF09140.6 261 1.6e-16 51.4 0.4 1 1 3.3e-15 5.4e-14 43.2 0.3 2 140 2 121 1 144 0.83 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_24 - 240 MipZ PF09140.6 261 2.9e-05 14.5 0.0 1 1 2.4e-06 4e-05 14.1 0.0 5 46 7 48 3 85 0.90 # 19857 # 20576 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_29 - 229 YhjQ PF06564.7 244 2.5e-05 15.0 0.0 1 1 1.3e-06 4.4e-05 14.2 0.0 10 42 9 41 1 54 0.89 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_20 - 121 SSB PF00436.20 104 5.8e-22 69.0 0.0 1 1 2.1e-23 6.9e-22 68.7 0.0 1 103 2 98 2 99 0.96 # 15319 # 15681 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 1_14 - 232 DNA_pack_N PF02500.10 284 8.3e-06 16.8 0.1 1 1 5e-07 1.6e-05 15.8 0.1 201 262 41 103 39 110 0.74 # 11139 # 11834 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 1_5 - 313 DUF87 PF01935.12 229 1.9e-06 19.1 0.1 1 1 4.9e-07 4e-06 18.1 0.1 24 58 144 179 125 215 0.89 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_8 - 822 DUF87 PF01935.12 229 7.3e-05 14.0 1.2 1 1 0.00013 0.0011 10.1 0.0 10 44 441 475 436 491 0.70 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_29 - 229 DUF87 PF01935.12 229 0.00016 12.8 1.4 1 2 0.00028 0.0023 9.1 0.0 33 60 11 37 9 39 0.94 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_29 - 229 DUF87 PF01935.12 229 0.00016 12.8 1.4 2 2 0.023 0.19 2.8 0.4 54 145 81 181 63 225 0.63 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_24 - 240 DUF87 PF01935.12 229 0.00021 12.5 1.9 1 1 4.9e-05 0.0004 11.5 1.9 21 61 1 40 1 230 0.91 # 19857 # 20576 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 822 AAA_22 PF13401.1 131 2.5e-10 32.0 0.1 1 2 0.025 0.83 1.2 0.0 88 112 132 162 90 205 0.68 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA_22 PF13401.1 131 2.5e-10 32.0 0.1 2 2 2e-08 6.5e-07 20.9 0.0 5 87 455 568 451 690 0.74 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 313 ATP_bind_1 PF03029.12 238 0.0001 13.2 0.1 1 1 1.9e-05 0.00032 11.6 0.0 1 24 148 171 148 191 0.82 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_8 - 822 ATP_bind_1 PF03029.12 238 0.00024 12.0 0.0 1 2 0.0042 0.069 4.0 0.0 182 237 150 205 104 206 0.70 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 ATP_bind_1 PF03029.12 238 0.00024 12.0 0.0 2 2 0.0015 0.024 5.4 0.0 1 16 459 474 459 483 0.86 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_29 - 229 SRP54 PF00448.17 196 1.3e-08 25.9 0.1 1 1 1e-09 3.4e-08 24.4 0.0 11 99 11 95 2 141 0.84 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_8 - 822 AAA_17 PF13207.1 121 2e-05 16.8 2.0 1 1 1.9e-05 0.00016 13.9 0.0 3 18 458 473 457 559 0.89 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 313 AAA_17 PF13207.1 121 3.8e-05 15.9 1.4 1 1 1.8e-05 0.00015 14.0 1.1 2 19 146 163 145 197 0.91 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_24 - 240 AAA_17 PF13207.1 121 4.3e-05 15.7 0.1 1 1 9.6e-06 8e-05 14.8 0.1 5 78 9 109 6 205 0.69 # 19857 # 20576 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_29 - 229 AAA_17 PF13207.1 121 5.6e-05 15.3 0.2 1 1 2.7e-05 0.00022 13.4 0.2 9 32 11 39 10 224 0.82 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_11 - 265 Adenylsucc_synt PF00709.16 421 0.00022 11.2 4.6 1 2 0.0013 0.043 3.7 0.1 359 404 86 132 57 148 0.78 # 8837 # 9631 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.313 1_11 - 265 Adenylsucc_synt PF00709.16 421 0.00022 11.2 4.6 2 2 3.9e-05 0.0013 8.7 0.9 139 214 159 229 147 240 0.84 # 8837 # 9631 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.313 1_29 - 229 ArsA_ATPase PF02374.10 305 1.7e-10 31.7 0.9 1 1 2.1e-11 3.5e-10 30.7 0.8 6 109 6 110 1 219 0.86 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_24 - 240 ArsA_ATPase PF02374.10 305 1.8e-06 18.4 0.0 1 1 2.2e-07 3.6e-06 17.5 0.0 4 40 6 42 3 59 0.92 # 19857 # 20576 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_5 - 313 PhoH PF02562.11 205 2.2e-05 15.1 0.2 1 1 1.4e-06 4.5e-05 14.1 0.0 5 57 128 181 125 204 0.75 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 T2SE PF00437.15 272 1.2e-83 271.4 0.3 1 1 4.7e-85 1.6e-83 271.0 0.3 8 269 24 285 19 288 0.98 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 G-alpha PF00503.15 389 0.00015 11.8 0.1 1 1 6.2e-06 0.0002 11.4 0.1 46 79 131 164 121 296 0.74 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 Zeta_toxin PF06414.7 201 6.8e-06 16.6 0.0 1 1 7.7e-07 1.3e-05 15.7 0.0 14 49 141 180 129 220 0.72 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_29 - 229 Zeta_toxin PF06414.7 201 4.9e-05 13.8 0.2 1 2 1.9e-05 0.00031 11.2 0.0 25 55 10 42 8 103 0.72 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_29 - 229 Zeta_toxin PF06414.7 201 4.9e-05 13.8 0.2 2 2 0.053 0.88 -0.1 0.0 154 188 144 178 138 191 0.80 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_8 - 822 SMC_N PF02463.14 220 0.00029 11.4 0.1 1 2 0.033 1.1 -0.3 0.1 70 125 53 108 42 119 0.68 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 SMC_N PF02463.14 220 0.00029 11.4 0.1 2 2 8.1e-05 0.0027 8.3 0.0 25 46 455 475 446 485 0.87 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_29 - 229 VirC1 PF07015.6 231 2.2e-13 41.1 0.1 1 1 1.2e-14 3.8e-13 40.3 0.1 4 150 3 145 1 207 0.75 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_29 - 229 Fer4_NifH PF00142.13 273 6.2e-08 23.4 0.1 1 1 1.3e-08 2.1e-07 21.6 0.0 7 55 8 54 2 94 0.74 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_24 - 240 Fer4_NifH PF00142.13 273 5.5e-06 17.0 0.2 1 1 5.7e-07 9.5e-06 16.2 0.0 4 74 7 75 4 92 0.77 # 19857 # 20576 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 822 Arch_ATPase PF01637.13 234 9.7e-05 13.4 3.0 1 3 0.031 1 0.3 0.9 82 128 137 188 84 202 0.59 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 Arch_ATPase PF01637.13 234 9.7e-05 13.4 3.0 2 3 2.5e-05 0.00083 10.4 0.0 23 57 457 491 455 500 0.84 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 Arch_ATPase PF01637.13 234 9.7e-05 13.4 3.0 3 3 0.067 2.2 -0.8 0.1 85 146 611 670 551 692 0.60 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA_16 PF13191.1 185 2e-05 15.9 0.0 1 1 1.1e-05 9.4e-05 13.8 0.0 25 51 455 481 445 590 0.90 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_24 - 240 AAA_16 PF13191.1 185 5e-05 14.7 0.0 1 1 8e-06 6.6e-05 14.3 0.0 27 119 6 102 5 147 0.78 # 19857 # 20576 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_5 - 313 AAA_16 PF13191.1 185 7.7e-05 14.1 0.1 1 1 1.9e-05 0.00016 13.0 0.1 22 50 141 169 133 277 0.91 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_29 - 229 AAA_16 PF13191.1 185 0.00013 13.4 0.0 1 1 2.4e-05 0.00019 12.7 0.0 34 77 11 61 9 180 0.71 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_8 - 822 AAA_23 PF13476.1 202 1.5e-05 16.7 0.3 1 2 0.0063 0.1 4.2 0.7 105 200 93 168 17 211 0.51 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA_23 PF13476.1 202 1.5e-05 16.7 0.3 2 2 9.4e-07 1.5e-05 16.7 0.3 20 42 455 477 443 623 0.88 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 313 AAA_23 PF13476.1 202 0.0014 10.3 6.4 1 2 0.046 0.76 1.4 0.2 103 172 12 80 2 146 0.51 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 AAA_23 PF13476.1 202 0.0014 10.3 6.4 2 2 7e-05 0.0012 10.6 3.1 19 39 143 163 127 306 0.93 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_29 - 229 AAA_18 PF13238.1 129 7.1e-07 21.0 1.0 1 1 3.9e-07 4.3e-06 18.4 1.0 8 85 11 114 9 225 0.76 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_8 - 822 AAA_18 PF13238.1 129 8e-05 14.3 2.2 1 2 0.043 0.47 2.1 0.6 11 80 95 195 95 204 0.66 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA_18 PF13238.1 129 8e-05 14.3 2.2 2 2 0.00015 0.0017 10.1 0.0 2 16 458 472 458 492 0.91 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 313 AAA_18 PF13238.1 129 0.017 6.8 9.0 1 2 0.00024 0.0026 9.4 2.0 1 18 146 163 146 192 0.75 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 AAA_18 PF13238.1 129 0.017 6.8 9.0 2 2 0.065 0.72 1.5 0.1 72 111 173 208 161 222 0.76 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_29 - 229 CbiA PF01656.18 195 6e-26 82.4 0.6 1 1 6.7e-27 1.1e-25 81.5 0.6 1 178 3 163 3 193 0.74 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_24 - 240 CbiA PF01656.18 195 1.8e-11 35.1 0.2 1 1 1.3e-12 2.1e-11 34.9 0.2 3 48 7 50 5 193 0.73 # 19857 # 20576 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_5 - 313 KaiC PF06745.8 227 7.7e-06 16.5 0.4 1 1 4.2e-07 1.4e-05 15.6 0.0 12 46 136 169 114 197 0.78 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_8 - 822 AAA_14 PF13173.1 128 0.0012 10.1 10.9 1 4 0.053 1.8 -0.1 0.9 60 82 126 157 74 171 0.48 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA_14 PF13173.1 128 0.0012 10.1 10.9 2 4 0.0001 0.0033 8.7 0.0 5 27 457 479 455 500 0.76 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA_14 PF13173.1 128 0.0012 10.1 10.9 3 4 0.0086 0.28 2.4 0.0 48 108 630 699 599 710 0.58 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA_14 PF13173.1 128 0.0012 10.1 10.9 4 4 0.049 1.6 0.0 0.1 14 42 769 808 767 820 0.57 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA_29 PF13555.1 62 1.3e-06 19.3 0.0 1 1 2e-07 3.3e-06 18.0 0.0 22 42 454 473 444 493 0.78 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 313 AAA_29 PF13555.1 62 9.2e-06 16.6 1.1 1 1 6.9e-07 1.1e-05 16.3 0.0 20 44 141 164 131 174 0.85 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_8 - 822 AAA PF00004.24 132 2.5e-07 22.3 0.1 1 3 0.00061 0.02 6.5 0.0 31 74 287 331 260 344 0.85 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA PF00004.24 132 2.5e-07 22.3 0.1 2 3 0.00015 0.0049 8.4 0.0 2 19 458 475 457 495 0.82 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA PF00004.24 132 2.5e-07 22.3 0.1 3 3 0.011 0.35 2.4 0.0 49 113 635 691 630 708 0.77 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 313 Sigma54_activat PF00158.21 168 5.9e-05 13.9 0.0 1 1 3.5e-06 0.00012 13.0 0.0 13 45 134 166 124 198 0.75 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_8 - 822 MMR_HSR1 PF01926.18 116 0.00028 12.2 0.1 1 1 8.3e-05 0.0014 10.0 0.0 3 20 458 475 456 616 0.90 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 313 MMR_HSR1 PF01926.18 116 0.00028 12.2 1.4 1 1 7.8e-05 0.0013 10.1 1.4 2 26 146 169 145 311 0.76 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 DUF258 PF03193.11 161 0.00026 11.5 0.0 1 1 1.4e-05 0.00045 10.8 0.0 21 59 128 167 110 209 0.83 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_23 - 608 TraG-D_C PF12696.2 128 1.7e-31 100.1 0.1 1 1 1.1e-32 3.6e-31 99.1 0.1 2 127 432 552 431 553 0.90 # 18023 # 19846 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_29 - 229 AAA_31 PF13614.1 157 3.7e-13 41.0 0.0 1 1 6e-13 9.9e-12 36.4 0.0 2 124 2 120 1 120 0.88 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_24 - 240 AAA_31 PF13614.1 157 1.5e-06 19.5 0.1 1 2 8.8e-07 1.5e-05 16.4 0.0 1 79 3 75 3 110 0.77 # 19857 # 20576 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_24 - 240 AAA_31 PF13614.1 157 1.5e-06 19.5 0.1 2 2 0.046 0.75 1.0 0.0 25 62 175 213 173 228 0.76 # 19857 # 20576 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 822 AAA_33 PF13671.1 143 0.00014 13.1 0.0 1 1 2.6e-05 0.00043 11.5 0.0 3 20 458 475 457 485 0.86 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 313 AAA_33 PF13671.1 143 0.00027 12.2 0.7 1 1 3.4e-05 0.00057 11.1 0.7 2 20 146 164 146 280 0.83 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 AAA_30 PF13604.1 196 7e-06 17.1 0.0 1 1 4.2e-07 1.4e-05 16.1 0.0 2 51 128 178 127 209 0.80 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 FtsK_SpoIIIE PF01580.13 205 3.6e-10 30.9 0.0 1 1 3.7e-11 6.1e-10 30.2 0.0 30 93 135 197 120 223 0.76 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_8 - 822 FtsK_SpoIIIE PF01580.13 205 5.3e-06 17.4 0.0 1 1 7.3e-07 1.2e-05 16.2 0.0 34 61 448 477 430 494 0.79 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 ABC_tran PF00005.22 137 1.2e-05 16.9 0.1 1 1 4.8e-06 7.9e-05 14.3 0.0 4 32 447 475 445 507 0.87 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 313 ABC_tran PF00005.22 137 3.1e-05 15.6 0.4 1 1 3.9e-06 6.5e-05 14.6 0.4 8 37 140 169 136 276 0.86 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 AAA_19 PF13245.1 76 4.1e-06 17.9 0.0 1 1 8.7e-07 9.6e-06 16.7 0.0 2 48 135 179 134 190 0.77 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_29 - 229 AAA_19 PF13245.1 76 1.9e-05 15.8 0.0 1 1 4e-06 4.4e-05 14.6 0.0 20 48 11 35 3 48 0.89 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_8 - 822 AAA_19 PF13245.1 76 7.3e-05 13.9 0.0 1 1 1.4e-05 0.00016 12.8 0.0 14 34 458 478 449 501 0.81 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA_10 PF12846.2 304 4.1e-36 116.2 0.1 1 2 0.012 0.081 3.6 0.1 84 185 117 279 78 286 0.58 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA_10 PF12846.2 304 4.1e-36 116.2 0.1 2 2 4.4e-35 2.9e-34 110.1 0.0 2 290 455 716 454 725 0.88 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_23 - 608 AAA_10 PF12846.2 304 5.2e-10 30.5 0.1 1 1 1.3e-10 8.7e-10 29.7 0.1 3 298 152 505 150 511 0.72 # 18023 # 19846 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_5 - 313 AAA_10 PF12846.2 304 3.4e-06 18.0 0.0 1 1 6.8e-07 4.5e-06 17.6 0.0 2 36 144 181 143 285 0.88 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_24 - 240 AAA_10 PF12846.2 304 2.2e-05 15.3 0.1 1 1 4.3e-06 2.8e-05 14.9 0.1 3 59 5 63 4 194 0.85 # 19857 # 20576 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_29 - 229 AAA_10 PF12846.2 304 5.1e-05 14.1 0.1 1 1 1.3e-05 8.8e-05 13.3 0.1 11 114 11 127 9 226 0.62 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_5 - 313 ResIII PF04851.10 184 2.3e-06 18.9 0.1 1 1 1.4e-07 4.6e-06 17.9 0.1 4 62 128 185 125 198 0.87 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_8 - 822 Zot PF05707.7 193 2.6e-07 21.6 0.0 1 3 0.0054 0.18 2.6 0.0 80 145 273 344 243 367 0.76 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 Zot PF05707.7 193 2.6e-07 21.6 0.0 2 3 0.027 0.9 0.3 0.0 4 15 458 469 457 475 0.87 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 Zot PF05707.7 193 2.6e-07 21.6 0.0 3 3 2.1e-06 7e-05 13.7 0.0 81 127 648 690 629 694 0.83 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_29 - 229 DUF2075 PF09848.4 352 0.00019 11.7 0.2 1 2 2e-05 0.00066 10.0 0.0 5 90 5 86 2 130 0.79 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_29 - 229 DUF2075 PF09848.4 352 0.00019 11.7 0.2 2 2 0.03 0.99 -0.5 0.1 200 225 152 177 150 210 0.75 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_24 - 240 Epimerase PF01370.16 236 3.6e-05 14.6 0.0 1 1 1.8e-06 5.9e-05 13.9 0.0 7 123 16 122 14 185 0.80 # 19857 # 20576 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_5 - 313 DEAD PF00270.24 169 1.1e-07 22.9 0.1 1 1 5.3e-09 1.7e-07 22.2 0.1 1 64 129 193 129 234 0.77 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_23 - 608 TrwB_AAD_bind PF10412.4 386 1.1e-26 84.6 0.0 1 1 1.1e-26 1.9e-25 80.6 0.0 122 368 295 554 138 564 0.70 # 18023 # 19846 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_5 - 313 TrwB_AAD_bind PF10412.4 386 2.4e-07 21.0 0.2 1 1 2.8e-08 4.6e-07 20.0 0.1 9 52 137 182 131 201 0.82 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_8 - 822 AAA_11 PF13086.1 236 3.1e-05 15.0 0.0 1 2 1.1e-05 0.00035 11.5 0.0 17 42 454 479 443 578 0.81 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 822 AAA_11 PF13086.1 236 3.1e-05 15.0 0.0 2 2 0.04 1.3 -0.2 0.0 2 39 736 783 735 816 0.78 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_28 - 132 Sigma54_activ_2 PF14532.1 138 8.7e-05 13.9 0.2 1 1 3.9e-06 0.00013 13.4 0.2 74 119 60 104 45 111 0.86 # 22122 # 22517 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.250 1_23 - 608 T4SS-DNA_transf PF02534.9 469 1.1e-100 328.7 0.2 1 1 4.7e-102 1.6e-100 328.2 0.2 10 459 110 598 101 605 0.84 # 18023 # 19846 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_29 - 229 NAD_binding_5 PF07994.7 295 0.00022 12.1 0.2 1 1 8.5e-06 0.00028 11.7 0.2 124 184 148 206 91 215 0.74 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_5 - 313 Pox_A32 PF04665.7 241 0.00034 11.3 2.5 1 2 1.4e-05 0.00046 10.8 0.2 12 37 142 167 133 180 0.82 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 Pox_A32 PF04665.7 241 0.00034 11.3 2.5 2 2 0.019 0.62 0.6 0.0 185 220 167 204 160 211 0.75 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 RNA_helicase PF00910.17 107 0.00024 12.6 0.0 1 1 2.4e-05 0.00081 11.0 0.0 1 24 146 169 146 197 0.82 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_5 - 313 UPF0079 PF02367.12 123 8.3e-05 13.6 0.1 1 1 1.3e-05 0.00044 11.2 0.0 10 41 138 169 130 187 0.82 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_29 - 229 AAA_24 PF13479.1 213 3.5e-05 14.8 0.4 1 1 2.2e-06 7.4e-05 13.7 0.1 11 79 9 90 3 104 0.74 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_5 - 313 UvrD-helicase PF00580.16 315 0.00025 11.7 0.6 1 1 9.7e-06 0.00032 11.3 0.6 8 35 139 164 128 298 0.85 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_8 - 822 NACHT PF05729.7 166 5.1e-06 17.6 0.0 1 1 1.3e-06 2.2e-05 15.5 0.0 4 26 458 480 456 489 0.89 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_5 - 313 NACHT PF05729.7 166 2e-05 15.7 0.0 1 1 2.9e-06 4.8e-05 14.4 0.0 3 47 146 187 144 201 0.82 # 2985 # 3923 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.347 1_8 - 822 AAA_25 PF13481.1 194 2.4e-06 18.4 0.0 1 1 4.1e-07 6.7e-06 16.9 0.0 33 58 455 479 428 580 0.80 # 4520 # 6985 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.318 1_29 - 229 AAA_25 PF13481.1 194 6.4e-05 13.7 0.1 1 1 1.1e-05 0.00017 12.3 0.0 42 66 10 36 5 87 0.86 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 1_29 - 229 APS_kinase PF01583.15 157 7.8e-05 13.7 0.0 1 1 7e-06 0.00023 12.2 0.0 11 39 10 38 3 50 0.91 # 22609 # 23295 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.306 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6ea7f33c-cb6f-4071-8215-43f200609d24 # Target file: checkm_output/bins/pCP006703.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP006703.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6ea7f33c-cb6f-4071-8215-43f200609d24 checkm_output/bins/pCP006703.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:07 2020 # [ok]