# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_62 - 298 Saccharop_dh PF03435.13 386 5.3e-06 18.1 0.6 1 1 1.1e-07 8.3e-06 17.5 0.6 1 44 8 57 8 84 0.79 # 58473 # 59366 # 1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.733 1_42 - 1671 UvrD_C_2 PF13538.1 104 1e-06 21.5 0.1 1 1 1.2e-07 9.1e-06 18.4 0.1 18 98 879 957 858 961 0.62 # 34757 # 39769 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_77 - 206 AAA_22 PF13401.1 131 4.6e-05 16.1 0.0 1 2 4.5e-05 0.0017 11.0 0.0 7 28 4 25 2 51 0.88 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_77 - 206 AAA_22 PF13401.1 131 4.6e-05 16.1 0.0 2 2 0.013 0.51 3.1 0.0 19 68 130 179 129 199 0.84 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_42 - 1671 AAA_22 PF13401.1 131 0.00031 13.5 3.5 1 2 0.0013 0.05 6.3 0.1 8 27 597 616 589 718 0.71 # 34757 # 39769 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_42 - 1671 AAA_22 PF13401.1 131 0.00031 13.5 3.5 2 2 0.016 0.62 2.8 0.1 46 100 1350 1412 1324 1439 0.69 # 34757 # 39769 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_66 - 213 ATP_bind_2 PF03668.10 284 1.2e-07 23.5 0.0 1 1 2.4e-09 1.9e-07 22.9 0.0 183 268 89 173 83 182 0.81 # 62595 # 63233 # -1 # ID=1_66;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.725 1_29 - 571 DNA_methylase PF00145.12 335 6.5e-21 67.3 0.0 1 3 3.3e-12 2.6e-10 32.4 0.0 4 79 31 113 29 124 0.88 # 23160 # 24872 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.698 1_29 - 571 DNA_methylase PF00145.12 335 6.5e-21 67.3 0.0 2 3 3.7e-10 2.9e-08 25.7 0.0 121 168 185 232 179 251 0.87 # 23160 # 24872 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.698 1_29 - 571 DNA_methylase PF00145.12 335 6.5e-21 67.3 0.0 3 3 0.00052 0.041 5.5 0.0 286 333 506 560 463 562 0.89 # 23160 # 24872 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.698 1_77 - 206 AAA_17 PF13207.1 121 1.1e-17 57.6 0.0 1 1 2.8e-19 2.2e-17 56.6 0.0 1 113 3 101 3 126 0.80 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_62 - 298 Semialdhyde_dh PF01118.19 121 4.4e-05 16.4 0.9 1 1 1.1e-06 8.3e-05 15.5 0.9 2 110 8 122 7 127 0.83 # 58473 # 59366 # 1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.733 1_42 - 1671 PhoH PF02562.11 205 0.00011 14.0 0.2 1 3 0.00021 0.016 6.9 0.0 8 37 580 611 575 638 0.75 # 34757 # 39769 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_42 - 1671 PhoH PF02562.11 205 0.00011 14.0 0.2 2 3 0.0039 0.31 2.8 0.0 121 158 677 715 635 721 0.85 # 34757 # 39769 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_42 - 1671 PhoH PF02562.11 205 0.00011 14.0 0.2 3 3 0.057 4.4 -1.0 0.0 108 143 923 956 896 986 0.77 # 34757 # 39769 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_77 - 206 SKI PF01202.17 158 3e-08 26.2 0.0 1 2 8.1e-08 6.3e-06 18.7 0.0 2 29 11 38 10 62 0.81 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_77 - 206 SKI PF01202.17 158 3e-08 26.2 0.0 2 2 0.00073 0.057 5.8 0.0 84 128 77 119 60 151 0.66 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_62 - 298 Shikimate_DH PF01488.15 135 3.5e-05 16.5 0.5 1 1 7.5e-07 5.9e-05 15.8 0.5 15 84 8 83 6 111 0.67 # 58473 # 59366 # 1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.733 1_62 - 298 F420_oxidored PF03807.12 96 2.5e-05 17.2 1.0 1 1 5.6e-07 4.3e-05 16.5 1.0 2 70 8 82 7 106 0.83 # 58473 # 59366 # 1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.733 1_77 - 206 AAA_18 PF13238.1 129 2.2e-07 23.8 0.0 1 2 1.8e-08 1.4e-06 21.2 0.0 1 33 4 39 4 82 0.71 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_77 - 206 AAA_18 PF13238.1 129 2.2e-07 23.8 0.0 2 2 0.031 2.4 1.1 0.0 69 112 54 98 44 104 0.81 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_77 - 206 AAA PF00004.24 132 2.6e-05 17.0 0.0 1 1 5e-07 3.9e-05 16.4 0.0 2 25 5 28 4 74 0.86 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_37 - 789 TraG-D_C PF12696.2 128 1.1e-25 82.6 0.0 1 1 2.5e-27 2e-25 81.7 0.0 3 127 481 599 479 600 0.85 # 29284 # 31650 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.696 1_77 - 206 AAA_33 PF13671.1 143 1.8e-08 26.9 0.1 1 1 6.4e-09 2.5e-07 23.2 0.1 3 39 5 102 4 190 0.69 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_63 - 377 AAA_33 PF13671.1 143 0.0001 14.8 0.1 1 1 1.2e-05 0.00046 12.6 0.0 2 56 160 247 159 256 0.86 # 59390 # 60520 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.714 1_77 - 206 KTI12 PF08433.5 270 0.00028 12.6 0.0 1 1 6.3e-06 0.00049 11.9 0.0 1 27 1 27 1 39 0.87 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_42 - 1671 AAA_30 PF13604.1 196 1.7e-45 147.5 2.4 1 1 2.2e-47 1.7e-45 147.5 2.4 2 195 577 787 576 788 0.90 # 34757 # 39769 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_77 - 206 ABC_tran PF00005.22 137 0.00031 13.6 0.0 1 1 1.2e-05 0.00047 13.0 0.0 13 36 3 26 1 128 0.79 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_42 - 1671 ABC_tran PF00005.22 137 0.00038 13.3 0.0 1 1 8.2e-05 0.0032 10.3 0.0 15 41 597 623 585 694 0.86 # 34757 # 39769 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_42 - 1671 AAA_19 PF13245.1 76 1.4e-07 23.8 1.9 1 2 2.2e-07 1.7e-05 17.1 0.2 3 60 585 640 583 650 0.79 # 34757 # 39769 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_42 - 1671 AAA_19 PF13245.1 76 1.4e-07 23.8 1.9 2 2 0.0019 0.15 4.5 0.1 40 65 803 829 791 845 0.76 # 34757 # 39769 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_42 - 1671 Zot PF05707.7 193 0.00061 11.8 0.0 1 1 1.8e-05 0.0014 10.6 0.0 2 94 595 690 594 768 0.77 # 34757 # 39769 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_37 - 789 TrwB_AAD_bind PF10412.4 386 1.4e-16 52.6 0.0 1 1 3.2e-18 2.5e-16 51.7 0.0 183 370 413 603 391 616 0.84 # 29284 # 31650 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.696 1_37 - 789 T4SS-DNA_transf PF02534.9 469 3.5e-21 67.8 0.0 1 1 6.3e-22 4.9e-20 64.0 0.0 46 465 209 640 158 644 0.77 # 29284 # 31650 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.696 1_62 - 298 Ldh_1_N PF00056.18 141 2.9e-15 48.9 0.7 1 1 6.5e-17 5.1e-15 48.1 0.7 3 136 8 141 7 146 0.92 # 58473 # 59366 # 1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.733 1_77 - 206 RNA_helicase PF00910.17 107 0.0006 12.6 0.0 1 1 1.1e-05 0.00087 12.1 0.0 1 26 4 29 4 88 0.74 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_77 - 206 AAA_25 PF13481.1 194 0.00026 12.9 0.0 1 1 5.9e-06 0.00046 12.2 0.0 37 57 5 25 2 45 0.87 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 1_77 - 206 AAA_28 PF13521.1 163 2.5e-05 16.9 0.0 1 1 7e-07 5.5e-05 15.7 0.0 1 26 3 29 3 36 0.86 # 70794 # 71411 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.670 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/74c27dd3-93cf-4cbe-be00-ac3f90f3f787 # Target file: checkm_output/bins/pCP003722.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP003722.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/74c27dd3-93cf-4cbe-be00-ac3f90f3f787 checkm_output/bins/pCP003722.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:04 2020 # [ok]