# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_3 - 385 MipZ PF09140.6 261 1.4e-12 40.9 0.0 1 2 5.3e-10 9.5e-08 25.1 0.1 2 40 117 155 116 171 0.92 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 2_3 - 385 MipZ PF09140.6 261 1.4e-12 40.9 0.0 2 2 1.8e-06 0.00033 13.5 0.0 77 113 220 256 202 266 0.76 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 2_3 - 385 YhjQ PF06564.7 244 2.7e-09 30.4 0.0 1 1 4.7e-11 8.4e-09 28.8 0.0 10 131 124 255 118 268 0.77 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_54 - 346 CoaE PF01121.15 180 0.00034 13.8 0.0 1 1 3.4e-06 0.0006 12.9 0.0 5 40 162 198 158 205 0.84 # 42691 # 43728 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.676 1_32 - 874 AAA_22 PF13401.1 131 1.8e-06 21.9 0.1 1 2 3.9e-06 0.00035 14.4 0.0 5 124 187 301 183 313 0.70 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 1_32 - 874 AAA_22 PF13401.1 131 1.8e-06 21.9 0.1 2 2 0.0066 0.59 4.0 0.0 36 81 540 592 522 618 0.69 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 1_21 - 328 AAA_22 PF13401.1 131 0.00013 15.8 0.0 1 1 2.8e-06 0.00025 14.9 0.0 6 28 14 36 10 110 0.69 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_10 - 105 ATP_bind_2 PF03668.10 284 6.3e-05 15.8 0.4 1 1 3.6e-07 6.3e-05 15.8 0.4 245 258 86 99 23 103 0.91 # 5825 # 6139 # -1 # ID=1_10;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_126 - 859 Flavi_DEAD PF07652.9 148 2.3e-06 21.1 0.3 1 2 0.00073 0.13 5.7 0.1 11 54 40 80 32 86 0.70 # 105368 # 107944 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 1_126 - 859 Flavi_DEAD PF07652.9 148 2.3e-06 21.1 0.3 2 2 4.5e-06 0.0008 12.9 0.0 90 136 140 186 105 194 0.77 # 105368 # 107944 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 1_54 - 346 AAA_17 PF13207.1 121 4.5e-06 21.2 0.0 1 1 4.4e-07 2.6e-05 18.8 0.0 1 41 159 197 159 245 0.78 # 42691 # 43728 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.676 1_55 - 190 AAA_17 PF13207.1 121 4.9e-06 21.1 0.1 1 1 3.1e-07 1.9e-05 19.2 0.1 2 23 7 45 7 183 0.66 # 43725 # 44294 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 328 AAA_17 PF13207.1 121 1.2e-05 19.9 0.1 1 1 8.9e-07 5.3e-05 17.8 0.1 2 110 15 123 14 174 0.71 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_80 - 363 ADH_zinc_N_2 PF13602.1 127 3.8e-06 21.6 0.1 1 1 1.7e-07 3e-05 18.7 0.0 14 116 232 345 220 350 0.74 # 70862 # 71950 # 1 # ID=1_80;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.736 1_80 - 363 ADH_zinc_N PF00107.21 130 1.5e-07 24.8 0.1 1 1 2.6e-09 4.6e-07 23.2 0.1 2 117 182 307 182 320 0.79 # 70862 # 71950 # 1 # ID=1_80;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.736 1_126 - 859 Helicase_C PF00271.26 78 1.4e-09 31.4 0.0 1 1 5.5e-11 3.3e-09 30.3 0.0 11 77 321 398 314 399 0.95 # 105368 # 107944 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 2_50 - 934 Helicase_C PF00271.26 78 7.5e-07 22.7 0.3 1 1 2.5e-08 1.5e-06 21.8 0.3 12 77 416 492 411 493 0.89 # 40012 # 42813 # -1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.688 1_68 - 974 Helicase_C PF00271.26 78 0.00039 14.0 0.0 1 1 1.9e-05 0.0011 12.5 0.0 35 77 666 705 636 706 0.87 # 58169 # 61090 # 1 # ID=1_68;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.685 2_3 - 385 ArsA_ATPase PF02374.10 305 4.7e-11 35.9 0.2 1 1 8.6e-13 1.5e-10 34.2 0.2 2 44 117 159 116 254 0.93 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 2_3 - 385 AAA_26 PF13500.1 199 0.00091 12.6 0.8 1 2 3.3e-05 0.0058 9.9 0.1 11 30 126 145 121 148 0.87 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 2_3 - 385 AAA_26 PF13500.1 199 0.00091 12.6 0.8 2 2 0.029 5.1 0.3 0.0 160 195 311 352 212 356 0.60 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 2_3 - 385 Methyltransf_24 PF13578.1 106 6.5e-05 17.5 0.0 1 1 1.1e-06 0.0002 15.9 0.0 14 80 136 252 126 269 0.61 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 328 Zeta_toxin PF06414.7 201 5.1e-09 29.2 0.8 1 1 5e-10 4.4e-08 26.1 0.8 12 179 8 152 2 163 0.88 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_54 - 346 Zeta_toxin PF06414.7 201 3.1e-05 16.8 0.0 1 1 6.6e-07 5.9e-05 15.9 0.0 14 37 155 178 143 190 0.86 # 42691 # 43728 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.676 1_56 - 279 F420_oxidored PF03807.12 96 1.7e-07 25.4 0.5 1 1 3.3e-09 5.9e-07 23.6 0.1 2 87 6 88 5 96 0.80 # 44302 # 45138 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 2_49 - 663 SMC_N PF02463.14 220 0.0017 11.3 0.0 1 2 0.00016 0.029 7.3 0.0 11 52 19 60 9 77 0.80 # 38022 # 40010 # 1 # ID=2_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 2_49 - 663 SMC_N PF02463.14 220 0.0017 11.3 0.0 2 2 0.011 2 1.3 0.0 101 154 251 567 186 594 0.65 # 38022 # 40010 # 1 # ID=2_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 2_3 - 385 VirC1 PF07015.6 231 0.0013 11.6 0.0 1 2 3.4e-05 0.006 9.4 0.0 4 40 118 154 116 161 0.88 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 2_3 - 385 VirC1 PF07015.6 231 0.0013 11.6 0.0 2 2 0.05 8.8 -1.0 0.0 70 80 229 239 201 250 0.54 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 2_3 - 385 Fer4_NifH PF00142.13 273 2.2e-06 20.7 0.0 1 2 1e-06 0.00018 14.5 0.0 8 43 124 159 116 170 0.85 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 2_3 - 385 Fer4_NifH PF00142.13 273 2.2e-06 20.7 0.0 2 2 0.0014 0.26 4.1 0.0 175 245 309 382 271 384 0.79 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_32 - 874 AAA_16 PF13191.1 185 1.5e-05 18.8 0.7 1 1 1.3e-05 0.00078 13.2 0.1 24 51 186 213 161 305 0.84 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 1_21 - 328 AAA_16 PF13191.1 185 8.6e-05 16.3 0.3 1 1 3.1e-06 0.00018 15.2 0.3 26 81 14 70 6 180 0.60 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_54 - 346 AAA_16 PF13191.1 185 0.0004 14.1 0.0 1 1 2.5e-05 0.0015 12.3 0.0 9 47 138 179 136 206 0.82 # 42691 # 43728 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.676 2_49 - 663 AAA_23 PF13476.1 202 9.1e-05 16.5 0.0 1 1 5.1e-07 9.1e-05 16.5 0.0 12 68 20 93 10 307 0.50 # 38022 # 40010 # 1 # ID=2_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_55 - 190 AAA_18 PF13238.1 129 1.5e-06 22.3 0.0 1 1 4.2e-07 2.5e-05 18.3 0.0 1 114 7 133 7 140 0.51 # 43725 # 44294 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 328 AAA_18 PF13238.1 129 7.4e-05 16.8 0.1 1 1 5.1e-06 0.0003 14.8 0.1 1 115 15 126 15 139 0.72 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_54 - 346 AAA_18 PF13238.1 129 0.0014 12.7 0.1 1 1 5.9e-05 0.0035 11.4 0.1 1 21 160 180 160 292 0.81 # 42691 # 43728 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.676 1_80 - 363 adh_short PF00106.20 167 3.8e-05 17.4 0.3 1 1 4.4e-07 7.8e-05 16.4 0.3 2 85 172 247 171 266 0.70 # 70862 # 71950 # 1 # ID=1_80;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.736 2_49 - 663 AAA_13 PF13166.1 712 2.2e-07 23.4 0.9 1 2 0.00068 0.12 4.4 0.3 93 173 206 280 188 324 0.54 # 38022 # 40010 # 1 # ID=2_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 2_49 - 663 AAA_13 PF13166.1 712 2.2e-07 23.4 0.9 2 2 8.1e-08 1.4e-05 17.4 0.0 357 536 390 586 370 586 0.83 # 38022 # 40010 # 1 # ID=2_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 2_3 - 385 CbiA PF01656.18 195 1.7e-28 93.0 0.0 1 1 4.3e-30 7.7e-28 90.9 0.0 1 184 118 347 118 357 0.71 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_56 - 279 Rossmann-like PF10727.4 127 0.00047 13.6 1.0 1 1 4.5e-06 0.00079 12.9 0.2 12 91 5 84 1 97 0.83 # 44302 # 45138 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_21 - 328 AAA_29 PF13555.1 62 0.00014 15.1 0.0 1 1 1.7e-06 0.0003 14.0 0.0 25 39 14 28 4 30 0.85 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 2_3 - 385 AAA PF00004.24 132 7.9e-05 16.6 0.0 1 1 1.6e-06 0.00028 14.8 0.0 8 54 126 194 119 243 0.81 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 328 DUF258 PF03193.11 161 0.00011 15.2 0.0 1 1 1e-06 0.00018 14.4 0.0 35 60 12 37 3 66 0.80 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_56 - 279 NAD_binding_2 PF03446.10 163 1.4e-09 31.7 0.0 1 1 1.2e-11 2.1e-09 31.2 0.0 4 160 6 157 3 160 0.88 # 44302 # 45138 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 2_3 - 385 AAA_31 PF13614.1 157 2e-11 37.8 0.0 1 1 7.5e-13 1.3e-10 35.1 0.0 8 134 123 258 116 267 0.84 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 328 AAA_33 PF13671.1 143 1.9e-21 70.2 0.2 1 1 5.2e-23 3.1e-21 69.5 0.2 1 138 14 139 14 148 0.86 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_54 - 346 AAA_33 PF13671.1 143 2e-14 47.4 0.0 1 1 9e-16 5.3e-14 46.0 0.0 1 140 159 309 159 311 0.90 # 42691 # 43728 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.676 1_55 - 190 AAA_33 PF13671.1 143 4e-07 23.7 0.1 1 1 3.5e-08 2.1e-06 21.4 0.0 2 134 7 144 7 153 0.67 # 43725 # 44294 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 328 KTI12 PF08433.5 270 6.6e-10 32.3 0.0 1 1 9.9e-12 1.8e-09 30.9 0.0 2 131 13 135 13 141 0.90 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_56 - 279 2-Hacid_dh_C PF02826.14 178 2.1e-08 27.2 0.0 1 1 1.8e-10 3.1e-08 26.7 0.0 36 102 3 72 1 101 0.82 # 44302 # 45138 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_21 - 328 ABC_tran PF00005.22 137 4.3e-05 17.6 0.0 1 1 4.7e-07 8.3e-05 16.6 0.0 8 29 9 30 5 36 0.90 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_55 - 190 TIGR03263 TIGR03263 180 2.1e-05 17.6 0.0 1 1 4.5e-07 4e-05 16.7 0.0 4 137 7 135 4 167 0.86 # 43725 # 44294 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 328 TIGR03263 TIGR03263 180 0.0019 11.2 0.0 1 1 3.4e-05 0.0031 10.6 0.0 2 21 13 32 12 42 0.86 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_126 - 859 AAA_19 PF13245.1 76 0.00017 15.1 0.6 1 1 9.4e-06 0.00084 12.8 0.6 15 63 38 81 31 98 0.80 # 105368 # 107944 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 1_68 - 974 AAA_19 PF13245.1 76 0.00037 14.0 1.9 1 1 1.2e-05 0.0011 12.5 0.1 2 58 308 364 307 383 0.68 # 58169 # 61090 # 1 # ID=1_68;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.685 1_80 - 363 NAD_binding_10 PF13460.1 183 3.1e-07 24.3 0.1 1 1 2.9e-09 5.1e-07 23.6 0.1 2 102 174 281 173 295 0.79 # 70862 # 71950 # 1 # ID=1_80;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.736 1_40 - 708 AAA_10 PF12846.2 304 0.00018 14.7 0.1 1 2 3e-05 0.0026 10.9 0.1 2 35 373 406 372 465 0.81 # 30255 # 32378 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.730 1_40 - 708 AAA_10 PF12846.2 304 0.00018 14.7 0.1 2 2 0.023 2 1.4 0.0 226 263 474 515 461 532 0.86 # 30255 # 32378 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.730 1_21 - 328 AAA_10 PF12846.2 304 0.00023 14.3 0.0 1 1 3.5e-06 0.00032 13.9 0.0 1 41 12 55 12 105 0.82 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_126 - 859 ResIII PF04851.10 184 7.5e-21 68.5 0.0 1 1 1.1e-21 1e-19 64.8 0.0 2 183 4 187 3 188 0.75 # 105368 # 107944 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 2_50 - 934 ResIII PF04851.10 184 1.9e-16 54.1 0.0 1 1 6.9e-18 6.1e-16 52.5 0.0 9 183 57 254 46 255 0.74 # 40012 # 42813 # -1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.688 1_126 - 859 DEAD PF00270.24 169 1.2e-11 38.1 0.0 1 1 5.1e-13 3e-11 36.8 0.0 2 163 8 187 7 192 0.69 # 105368 # 107944 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 2_50 - 934 DEAD PF00270.24 169 5.4e-08 26.2 0.0 1 1 2.7e-09 1.6e-07 24.7 0.0 19 133 81 226 69 257 0.68 # 40012 # 42813 # -1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.688 1_68 - 974 DEAD PF00270.24 169 2.2e-06 21.0 0.0 1 2 0.00033 0.02 8.1 0.0 2 87 303 397 302 414 0.66 # 58169 # 61090 # 1 # ID=1_68;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.685 1_68 - 974 DEAD PF00270.24 169 2.2e-06 21.0 0.0 2 2 5.6e-05 0.0033 10.6 0.0 118 163 477 521 436 528 0.70 # 58169 # 61090 # 1 # ID=1_68;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.685 1_55 - 190 CPT PF07931.7 174 9e-13 41.9 0.4 1 1 4.4e-14 3.9e-12 39.8 0.4 4 172 7 179 5 181 0.79 # 43725 # 44294 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 328 CPT PF07931.7 174 0.001 12.4 3.0 1 2 0.00018 0.016 8.5 0.1 3 20 14 31 12 37 0.91 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_21 - 328 CPT PF07931.7 174 0.001 12.4 3.0 2 2 0.0047 0.42 3.9 0.6 106 149 99 146 70 155 0.68 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_32 - 874 RNA_helicase PF00910.17 107 0.0021 12.0 0.0 1 1 4.1e-05 0.0074 10.2 0.0 2 31 190 219 189 315 0.83 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 1_56 - 279 IlvN PF07991.7 165 5.7e-05 16.2 0.0 1 1 6e-07 0.00011 15.4 0.0 5 78 4 79 1 90 0.86 # 44302 # 45138 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_21 - 328 AAA_24 PF13479.1 213 4.8e-05 16.7 0.0 1 1 3.9e-07 6.9e-05 16.2 0.0 5 75 14 81 10 102 0.73 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_32 - 874 NACHT PF05729.7 166 4.8e-11 36.3 0.0 1 1 8.8e-13 1.6e-10 34.6 0.0 1 163 187 363 187 365 0.73 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 1_21 - 328 AAA_25 PF13481.1 194 2.2e-05 17.7 0.9 1 2 2.8e-06 0.00025 14.2 0.0 25 50 4 29 2 35 0.86 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_21 - 328 AAA_25 PF13481.1 194 2.2e-05 17.7 0.9 2 2 0.032 2.8 1.0 0.1 145 176 37 68 31 80 0.83 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_32 - 874 AAA_25 PF13481.1 194 2.5e-05 17.5 0.0 1 1 8e-07 7.1e-05 16.0 0.0 28 85 181 235 159 279 0.83 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 1_126 - 859 SNF2_N PF00176.18 299 0.00013 14.5 0.0 1 1 1.2e-06 0.0002 13.9 0.0 113 172 125 186 42 192 0.83 # 105368 # 107944 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 1_21 - 328 AAA_28 PF13521.1 163 0.00079 13.1 1.1 1 1 2.8e-05 0.0025 11.5 0.3 2 17 15 30 14 37 0.92 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 2_49 - 663 AAA_28 PF13521.1 163 0.0013 12.5 0.0 1 1 1.4e-05 0.0013 12.5 0.0 3 39 36 76 34 97 0.85 # 38022 # 40010 # 1 # ID=2_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 2_3 - 385 APS_kinase PF01583.15 157 0.00016 15.0 0.1 1 2 0.00029 0.051 6.9 0.0 11 50 125 163 117 171 0.80 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 2_3 - 385 APS_kinase PF01583.15 157 0.00016 15.0 0.1 2 2 0.00074 0.13 5.6 0.0 92 138 234 279 218 289 0.81 # 2127 # 3281 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c871b806-9ea2-4bf6-be2c-0dcd987f4f9f # Target file: checkm_output/bins/pCP003721.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP003721.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c871b806-9ea2-4bf6-be2c-0dcd987f4f9f checkm_output/bins/pCP003721.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:05 2020 # [ok]