# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 306 3HCDH_N PF02737.13 180 0.00065 12.3 0.3 1 2 2.4e-05 0.0024 10.4 0.0 6 60 8 66 3 120 0.67 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_12 - 306 3HCDH_N PF02737.13 180 0.00065 12.3 0.3 2 2 0.06 6.1 -0.6 0.1 106 127 228 249 210 260 0.61 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_8 - 329 NmrA PF05368.8 233 8.8e-09 27.8 0.0 1 1 2.9e-10 1.4e-08 27.1 0.0 1 104 7 126 7 136 0.89 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_12 - 306 NmrA PF05368.8 233 5.8e-06 18.6 0.1 1 1 2.2e-07 1.1e-05 17.7 0.1 2 224 4 251 3 260 0.70 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 3_2 - 188 Methyltransf_11 PF08241.7 95 4e-07 23.4 0.1 1 1 9.8e-09 9.9e-07 22.2 0.1 52 95 40 83 5 83 0.84 # 1324 # 1887 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_8 - 329 Semialdhyde_dh PF01118.19 121 0.00017 14.9 0.0 1 1 4.1e-06 0.00042 13.6 0.0 2 46 7 50 6 126 0.73 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_8 - 329 F420_oxidored PF03807.12 96 0.00053 13.4 0.0 1 1 1.5e-05 0.0016 11.9 0.0 6 47 12 50 6 100 0.83 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_8 - 329 adh_short PF00106.20 167 6.5e-10 32.1 0.0 1 1 2.8e-11 9.4e-10 31.6 0.0 1 140 5 130 5 150 0.83 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_12 - 306 adh_short PF00106.20 167 5e-08 25.9 0.2 1 1 1e-08 3.4e-07 23.2 0.1 3 139 3 119 2 124 0.82 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_14 - 318 adh_short PF00106.20 167 5.5e-06 19.3 0.0 1 1 7.8e-07 2.6e-05 17.1 0.0 4 142 21 138 18 159 0.82 # 15364 # 16317 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_8 - 329 Polysacc_synt_2 PF02719.10 294 1.1e-102 335.8 0.4 1 1 3.9e-104 1.3e-102 335.5 0.4 1 290 7 279 7 283 0.96 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_12 - 306 Polysacc_synt_2 PF02719.10 294 4.6e-23 74.4 0.9 1 1 9.6e-24 3.2e-22 71.6 0.9 2 274 4 273 3 288 0.82 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_14 - 318 Polysacc_synt_2 PF02719.10 294 4.2e-12 38.4 0.0 1 1 2.9e-13 9.8e-12 37.2 0.0 6 254 25 268 20 277 0.80 # 15364 # 16317 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 3_4 - 224 Sulfotransfer_2 PF03567.9 253 1.6e-21 70.0 1.5 1 1 3.6e-23 3.6e-21 68.8 1.5 8 252 3 211 1 212 0.72 # 4241 # 4912 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.289 1_8 - 329 KR PF08659.5 181 4e-07 22.8 0.0 1 1 1.9e-08 9.6e-07 21.5 0.0 2 135 6 124 6 129 0.72 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_12 - 306 KR PF08659.5 181 3.5e-05 16.4 0.6 1 1 0.0001 0.0052 9.4 0.2 4 34 4 35 2 126 0.63 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_12 - 306 NAD_binding_2 PF03446.10 163 0.00071 12.4 0.3 1 2 9.3e-05 0.0094 8.7 0.0 3 77 3 84 1 117 0.63 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_12 - 306 NAD_binding_2 PF03446.10 163 0.00071 12.4 0.3 2 2 0.014 1.4 1.6 0.1 71 110 206 250 194 259 0.69 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 5_6 - 196 AAA_31 PF13614.1 157 0.00021 14.1 0.0 1 2 0.0026 0.13 5.1 0.0 116 150 45 79 4 82 0.81 # 2922 # 3509 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.413 5_6 - 196 AAA_31 PF13614.1 157 0.00021 14.1 0.0 2 2 0.001 0.052 6.4 0.0 97 150 135 187 111 192 0.80 # 2922 # 3509 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_44 - 196 AAA_31 PF13614.1 157 0.00023 14.0 0.0 1 2 0.0039 0.2 4.5 0.0 116 150 45 79 27 82 0.86 # 43123 # 43710 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.415 1_44 - 196 AAA_31 PF13614.1 157 0.00023 14.0 0.0 2 2 0.0011 0.053 6.4 0.0 97 150 135 187 112 192 0.81 # 43123 # 43710 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.415 1_17 - 414 TUG-UBL1 PF11470.3 65 0.00045 13.1 0.0 1 1 1e-05 0.001 11.9 0.0 35 60 270 296 252 298 0.89 # 17983 # 19224 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 1_12 - 306 NAD_binding_4 PF07993.7 249 2.5e-20 65.3 0.1 1 2 5.6e-06 0.00019 13.3 0.2 1 23 5 27 5 42 0.83 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_12 - 306 NAD_binding_4 PF07993.7 249 2.5e-20 65.3 0.1 2 2 3.8e-17 1.3e-15 49.9 0.0 84 248 62 218 39 219 0.86 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_8 - 329 NAD_binding_4 PF07993.7 249 2.3e-17 55.6 0.0 1 2 1.7e-15 5.7e-14 44.5 0.0 1 138 9 129 9 133 0.82 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_8 - 329 NAD_binding_4 PF07993.7 249 2.3e-17 55.6 0.0 2 2 5.1e-05 0.0017 10.2 0.0 160 200 127 168 125 202 0.76 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_14 - 318 NAD_binding_4 PF07993.7 249 2.3e-05 16.3 0.0 1 2 0.016 0.55 2.0 0.0 1 21 22 42 22 68 0.81 # 15364 # 16317 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_14 - 318 NAD_binding_4 PF07993.7 249 2.3e-05 16.3 0.0 2 2 7.6e-05 0.0026 9.6 0.0 114 211 109 191 67 227 0.60 # 15364 # 16317 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_9 - 275 RmlD_sub_bind PF04321.12 287 1e-31 102.7 0.0 1 1 5.1e-33 1.3e-31 102.4 0.0 1 235 1 232 1 245 0.91 # 10422 # 11246 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_12 - 306 RmlD_sub_bind PF04321.12 287 1.1e-28 92.8 0.0 1 1 5.3e-30 1.3e-28 92.5 0.0 1 227 1 248 1 291 0.86 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_8 - 329 RmlD_sub_bind PF04321.12 287 9.7e-18 56.9 0.0 1 1 1.3e-17 3.3e-16 51.9 0.0 2 163 6 177 5 196 0.84 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_14 - 318 RmlD_sub_bind PF04321.12 287 5.5e-12 38.0 0.0 1 1 3.2e-13 8.1e-12 37.5 0.0 2 91 19 119 18 144 0.92 # 15364 # 16317 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_12 - 306 NAD_binding_10 PF13460.1 183 1.7e-13 43.8 0.0 1 1 1.2e-14 3.1e-13 43.0 0.0 3 181 5 223 4 225 0.74 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_8 - 329 NAD_binding_10 PF13460.1 183 2.7e-13 43.2 0.0 1 1 1.6e-14 4e-13 42.7 0.0 1 101 7 128 7 188 0.81 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_14 - 318 NAD_binding_10 PF13460.1 183 8e-07 22.1 0.0 1 1 4e-08 1e-06 21.8 0.0 2 100 21 133 20 204 0.76 # 15364 # 16317 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_9 - 275 NAD_binding_10 PF13460.1 183 0.0006 12.7 0.0 1 1 3.2e-05 0.00081 12.3 0.0 2 121 4 131 3 156 0.61 # 10422 # 11246 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_12 - 306 3Beta_HSD PF01073.14 280 1.5e-29 95.5 0.1 1 1 5.7e-31 1.9e-29 95.1 0.1 1 230 4 224 4 238 0.83 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_8 - 329 3Beta_HSD PF01073.14 280 1.5e-28 92.2 0.1 1 2 5.4e-27 1.8e-25 82.0 0.0 1 119 8 128 8 134 0.89 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_8 - 329 3Beta_HSD PF01073.14 280 1.5e-28 92.2 0.1 2 2 6.2e-05 0.0021 9.7 0.0 138 201 127 186 124 198 0.78 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_14 - 318 3Beta_HSD PF01073.14 280 1.6e-07 23.2 0.0 1 1 7.7e-09 2.6e-07 22.5 0.0 1 106 21 120 21 136 0.79 # 15364 # 16317 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_12 - 306 Epimerase PF01370.16 236 2.8e-62 203.1 0.0 1 1 1.4e-63 3.6e-62 202.7 0.0 2 232 4 230 3 237 0.92 # 12910 # 13827 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_14 - 318 Epimerase PF01370.16 236 6.3e-41 133.2 0.0 1 1 3.3e-42 8.3e-41 132.8 0.0 2 235 21 242 20 243 0.91 # 15364 # 16317 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_8 - 329 Epimerase PF01370.16 236 5.8e-29 94.1 0.0 1 1 2.5e-29 6.4e-28 90.6 0.0 1 222 7 211 7 223 0.87 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 1_9 - 275 Epimerase PF01370.16 236 1.6e-18 59.9 0.0 1 1 9.5e-20 2.4e-18 59.3 0.0 2 148 4 139 3 152 0.87 # 10422 # 11246 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_7 - 364 Ribosomal_S2 PF00318.15 211 0.00023 13.3 0.0 1 1 6.5e-06 0.00066 11.8 0.0 106 172 48 115 32 123 0.76 # 8351 # 9442 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.336 3_4 - 224 Sulfotransfer_1 PF00685.22 267 2.9e-05 16.3 0.6 1 1 1.7e-06 0.00017 13.8 0.5 81 145 53 118 3 137 0.74 # 4241 # 4912 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.289 3_7 - 221 ArgK PF03308.11 267 0.00027 12.7 2.8 1 1 2.9e-06 0.00029 12.6 2.1 163 264 67 174 55 181 0.72 # 6693 # 7355 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321 1_8 - 329 TrkA_N PF02254.13 116 0.00059 12.8 0.0 1 1 1.3e-05 0.0013 11.7 0.0 5 57 12 70 7 78 0.85 # 9435 # 10421 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 3_4 - 224 Gal-3-0_sulfotr PF06990.6 402 1.5e-12 39.7 1.8 1 2 5.3e-05 0.0053 8.3 1.5 69 188 6 115 2 121 0.61 # 4241 # 4912 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.289 3_4 - 224 Gal-3-0_sulfotr PF06990.6 402 1.5e-12 39.7 1.8 2 2 7.5e-14 7.6e-12 37.4 0.3 161 314 70 222 66 223 0.82 # 4241 # 4912 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.289 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4a12909f-dd12-4d07-97e3-8300cb00b0cc # Target file: checkm_output/bins/pCP001989.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP001989.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4a12909f-dd12-4d07-97e3-8300cb00b0cc checkm_output/bins/pCP001989.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:03 2020 # [ok]