# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 406 Pyr_redox_2 PF07992.9 201 1.9e-07 23.1 0.0 1 1 7.3e-09 3.7e-07 22.1 0.0 1 65 16 78 16 170 0.76 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_28 - 378 AAA_22 PF13401.1 131 2.6e-05 16.3 0.0 1 1 1.4e-06 7.3e-05 14.9 0.0 7 113 138 260 134 281 0.61 # 25885 # 27018 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.426 1_14 - 321 tRNA_anti-like PF12869.2 144 0.00017 13.0 0.2 1 1 8.4e-06 0.00043 11.7 0.2 60 132 209 280 204 291 0.86 # 12288 # 13250 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_24 - 406 Trp_halogenase PF04820.9 454 8.9e-05 13.1 0.0 1 3 0.00078 0.04 4.4 0.0 2 40 17 51 16 61 0.82 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_24 - 406 Trp_halogenase PF04820.9 454 8.9e-05 13.1 0.0 2 3 0.00027 0.014 5.9 0.0 199 214 143 158 85 167 0.74 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_24 - 406 Trp_halogenase PF04820.9 454 8.9e-05 13.1 0.0 3 3 0.095 4.8 -2.5 0.0 315 360 288 335 282 355 0.65 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_23 - 169 ADH_zinc_N PF00107.21 130 1.7e-16 51.9 0.0 1 1 3.8e-18 1.9e-16 51.8 0.0 2 107 31 133 30 167 0.84 # 21362 # 21868 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.363 1_24 - 406 NAD_binding_8 PF13450.1 68 8.9e-07 20.9 0.0 1 1 4.3e-08 2.2e-06 19.6 0.0 1 28 19 45 19 65 0.93 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_24 - 406 FAD_binding_3 PF01494.14 356 5.6e-06 17.5 0.0 1 2 1.5e-05 0.00077 10.5 0.0 5 36 18 48 14 59 0.87 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_24 - 406 FAD_binding_3 PF01494.14 356 5.6e-06 17.5 0.0 2 2 0.00067 0.034 5.0 0.0 296 355 296 355 287 356 0.84 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_28 - 378 AAA_16 PF13191.1 185 5.3e-05 15.2 0.8 1 1 7.1e-06 0.00036 12.5 0.8 25 49 136 160 132 297 0.84 # 25885 # 27018 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.426 1_28 - 378 AAA_29 PF13555.1 62 4.1e-05 15.1 0.0 1 1 1.5e-06 7.9e-05 14.2 0.0 17 40 130 152 123 161 0.80 # 25885 # 27018 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.426 1_24 - 406 FAD_binding_2 PF00890.19 417 0.00065 10.5 0.0 1 1 1.9e-05 0.00097 9.9 0.0 4 32 19 46 16 51 0.84 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_24 - 406 Thi4 PF01946.12 230 0.00017 12.7 0.0 1 2 3.8e-05 0.002 9.2 0.0 14 49 11 45 1 53 0.86 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_24 - 406 Thi4 PF01946.12 230 0.00017 12.7 0.0 2 2 0.013 0.67 0.9 0.0 98 170 96 160 84 172 0.73 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_28 - 378 FtsK_SpoIIIE PF01580.13 205 9.7e-24 75.9 0.0 1 1 3.6e-25 1.8e-23 75.0 0.0 12 204 109 277 101 278 0.92 # 25885 # 27018 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.426 1_24 - 406 Lycopene_cycl PF05834.7 374 0.00028 11.8 0.0 1 1 1.3e-05 0.00065 10.6 0.0 2 33 17 45 17 61 0.87 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_28 - 378 ABC_tran PF00005.22 137 2.3e-05 16.7 0.0 1 1 1e-06 5.2e-05 15.5 0.0 4 33 128 157 126 163 0.91 # 25885 # 27018 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.426 1_28 - 378 AAA_10 PF12846.2 304 5.8e-14 44.1 0.1 1 2 6.5e-06 0.00033 12.1 0.0 4 38 138 176 136 189 0.84 # 25885 # 27018 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.426 1_28 - 378 AAA_10 PF12846.2 304 5.8e-14 44.1 0.1 2 2 2.7e-11 1.4e-09 29.7 0.1 218 300 231 310 204 313 0.90 # 25885 # 27018 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.426 1_24 - 406 DAO PF01266.19 358 9.1e-06 16.7 0.0 1 2 3.1e-07 1.6e-05 15.8 0.0 2 35 17 49 16 177 0.86 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_24 - 406 DAO PF01266.19 358 9.1e-06 16.7 0.0 2 2 0.088 4.5 -2.1 0.0 209 228 189 208 107 255 0.64 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_28 - 378 DUF815 PF05673.8 250 3.2e-05 14.9 0.0 1 1 1.4e-06 7.1e-05 13.7 0.0 55 95 137 183 132 200 0.79 # 25885 # 27018 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.426 1_24 - 406 Pyr_redox PF00070.22 80 3.7e-05 16.1 0.0 1 1 2.7e-06 0.00014 14.3 0.0 1 32 16 46 16 53 0.89 # 22161 # 23378 # -1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.372 1_7 - 211 DWNN PF08783.6 74 0.0049 8.8 6.2 1 3 0.00017 0.0089 8.0 0.2 3 46 35 79 34 109 0.82 # 5484 # 6116 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_7 - 211 DWNN PF08783.6 74 0.0049 8.8 6.2 2 3 0.084 4.3 -0.6 0.2 46 58 164 175 139 183 0.57 # 5484 # 6116 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_7 - 211 DWNN PF08783.6 74 0.0049 8.8 6.2 3 3 0.0089 0.45 2.5 1.0 22 40 183 201 165 206 0.73 # 5484 # 6116 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_48 - 327 PB1 PF00564.19 84 3.4e-05 15.5 0.2 1 1 2.6e-06 0.00013 13.6 0.2 25 68 257 302 242 316 0.88 # 42739 # 43719 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_28 - 378 NACHT PF05729.7 166 3.7e-05 15.4 0.0 1 1 1.3e-06 6.7e-05 14.5 0.0 2 38 137 172 136 179 0.88 # 25885 # 27018 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.426 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/316bde40-d8b0-471c-962c-8cf2de9db8cc # Target file: checkm_output/bins/pCP001987.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP001987.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/316bde40-d8b0-471c-962c-8cf2de9db8cc checkm_output/bins/pCP001987.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:37:02 2020 # [ok]