# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_27 - 819 Mg_chelatase PF01078.16 207 1.4e-06 20.7 0.0 1 1 2.8e-08 3.4e-06 19.5 0.0 11 42 453 484 447 488 0.91 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 226 ABC_ATPase PF09818.4 448 0.0011 10.7 1.7 1 1 2.4e-05 0.0029 9.3 0.9 243 314 27 90 16 97 0.68 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_118 - 250 IstB_IS21 PF01695.12 178 8.2e-57 184.6 0.0 1 1 2e-58 1.2e-56 184.1 0.0 2 177 54 230 53 231 0.98 # 103814 # 104563 # 1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_27 - 819 IstB_IS21 PF01695.12 178 0.00025 13.7 0.0 1 1 1.7e-05 0.001 11.6 0.0 46 82 463 499 430 531 0.84 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_58 - 110 SSB PF00436.20 104 9.6e-21 66.8 0.0 1 1 1e-22 1.2e-20 66.5 0.0 1 102 4 97 4 98 0.89 # 57959 # 58288 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_27 - 819 DUF87 PF01935.12 229 5.1e-05 16.3 3.5 1 2 0.031 1.8 1.4 1.9 150 150 203 203 43 349 0.52 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 DUF87 PF01935.12 229 5.1e-05 16.3 3.5 2 2 2.2e-05 0.0013 11.7 0.0 27 98 468 534 465 628 0.79 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_31 - 643 DUF87 PF01935.12 229 0.00046 13.2 0.6 1 1 1.9e-05 0.0012 11.9 0.5 16 154 182 356 170 413 0.65 # 26981 # 28909 # -1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_27 - 819 NB-ARC PF00931.17 287 0.063 5.2 9.5 1 2 7.8e-05 0.0094 7.9 0.6 35 93 104 167 102 186 0.80 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 NB-ARC PF00931.17 287 0.063 5.2 9.5 2 2 0.0036 0.43 2.5 0.1 22 40 467 485 453 495 0.86 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_22 PF13401.1 131 2.3e-07 24.2 0.0 1 2 7.7e-08 4.6e-06 20.0 0.0 3 47 463 502 460 534 0.79 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_22 PF13401.1 131 2.3e-07 24.2 0.0 2 2 0.067 4 0.8 0.0 88 122 680 720 659 729 0.69 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 226 AAA_22 PF13401.1 131 1.1e-05 18.7 0.6 1 1 1.6e-06 9.8e-05 15.7 0.6 5 112 30 178 26 195 0.63 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_9 - 226 MutS_V PF00488.16 235 1.7e-05 17.4 1.1 1 2 4.2e-07 5.1e-05 15.9 0.4 24 67 11 53 6 63 0.88 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_9 - 226 MutS_V PF00488.16 235 1.7e-05 17.4 1.1 2 2 0.035 4.2 -0.2 0.0 105 130 131 157 122 220 0.78 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 483 AAA_15 PF13175.1 415 1.5e-17 56.8 0.4 1 2 2.5e-19 1.5e-17 56.8 0.4 267 415 77 255 47 255 0.72 # 11821 # 13269 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_15 - 483 AAA_15 PF13175.1 415 1.5e-17 56.8 0.4 2 2 0.029 1.7 0.6 0.4 70 133 309 364 259 456 0.69 # 11821 # 13269 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_9 - 226 AAA_15 PF13175.1 415 1.3e-11 37.2 8.1 1 2 6.9e-08 4.2e-06 19.1 2.9 6 79 13 109 3 148 0.61 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_9 - 226 AAA_15 PF13175.1 415 1.3e-11 37.2 8.1 2 2 1.8e-08 1.1e-06 21.1 0.6 370 411 150 190 127 192 0.90 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_27 - 819 AAA_17 PF13207.1 121 5.9e-05 17.1 2.4 1 1 4.8e-06 0.00019 15.4 0.0 2 32 467 500 466 595 0.67 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 226 AAA_17 PF13207.1 121 0.00045 14.2 0.4 1 1 1.7e-05 0.00066 13.7 0.4 2 21 32 51 31 200 0.88 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_118 - 250 AAA_17 PF13207.1 121 0.00093 13.2 2.4 1 1 4.6e-05 0.0018 12.2 0.5 2 66 103 177 102 247 0.68 # 103814 # 104563 # 1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_15 - 483 AAA_21 PF13304.1 303 1.9e-16 54.0 0.9 1 2 3.2e-18 1.9e-16 54.0 0.9 132 303 54 256 23 256 0.81 # 11821 # 13269 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_15 - 483 AAA_21 PF13304.1 303 1.9e-16 54.0 0.9 2 2 0.019 1.1 2.2 3.3 41 161 295 407 290 459 0.85 # 11821 # 13269 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_9 - 226 AAA_21 PF13304.1 303 2.5e-16 53.6 8.1 1 1 8e-15 4.8e-13 42.8 8.1 3 297 33 189 31 194 0.64 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_9 - 226 Miro PF08477.8 119 5.9e-05 16.7 0.4 1 1 1.2e-06 0.00014 15.5 0.4 3 26 33 61 32 160 0.82 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_118 - 250 PhoH PF02562.11 205 1.6e-06 20.7 0.0 1 1 2.1e-08 2.5e-06 20.0 0.0 13 52 94 134 83 197 0.82 # 103814 # 104563 # 1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_27 - 819 T2SE PF00437.15 272 2.7e-05 16.3 0.3 1 1 6.6e-07 7.9e-05 14.8 0.0 118 150 454 486 424 512 0.84 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_100 - 329 AdoHcyase_NAD PF00670.16 162 0.00015 14.8 0.2 1 2 0.007 0.84 2.6 0.0 94 153 60 118 44 125 0.76 # 88205 # 89191 # -1 # ID=1_100;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.379 1_100 - 329 AdoHcyase_NAD PF00670.16 162 0.00015 14.8 0.2 2 2 4.3e-05 0.0051 9.8 0.0 21 109 145 236 138 259 0.83 # 88205 # 89191 # -1 # ID=1_100;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.379 1_100 - 329 Shikimate_DH PF01488.15 135 0.0001 15.6 0.5 1 2 0.0087 1 2.6 0.0 107 130 32 56 6 61 0.70 # 88205 # 89191 # -1 # ID=1_100;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.379 1_100 - 329 Shikimate_DH PF01488.15 135 0.0001 15.6 0.5 2 2 4.3e-05 0.0051 10.1 0.1 8 98 143 227 137 238 0.77 # 88205 # 89191 # -1 # ID=1_100;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.379 1_100 - 329 F420_oxidored PF03807.12 96 9.3e-09 28.8 0.0 1 1 2.8e-10 3.3e-08 27.1 0.0 1 71 149 211 149 237 0.87 # 88205 # 89191 # -1 # ID=1_100;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.379 1_9 - 226 SMC_N PF02463.14 220 1.8e-06 20.4 0.2 1 2 7.2e-06 0.00086 11.7 0.1 24 45 29 50 9 81 0.81 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_9 - 226 SMC_N PF02463.14 220 1.8e-06 20.4 0.2 2 2 0.00021 0.025 6.9 0.0 158 202 149 194 137 210 0.77 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_91 - 188 PARP_regulatory PF01358.13 294 1.9e-05 16.6 0.6 1 1 2.5e-07 3e-05 15.9 0.6 223 278 65 118 55 133 0.82 # 83062 # 83625 # -1 # ID=1_91;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.305 1_27 - 819 Arch_ATPase PF01637.13 234 3.9e-08 26.4 6.6 1 4 0.096 12 -1.3 0.1 125 125 178 178 108 267 0.62 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 Arch_ATPase PF01637.13 234 3.9e-08 26.4 6.6 2 4 0.067 8.1 -0.8 1.1 71 121 284 336 258 367 0.68 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 Arch_ATPase PF01637.13 234 3.9e-08 26.4 6.6 3 4 3.2e-08 3.8e-06 19.9 0.1 20 83 464 554 455 612 0.69 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 Arch_ATPase PF01637.13 234 3.9e-08 26.4 6.6 4 4 0.00024 0.029 7.2 0.0 112 148 671 710 639 721 0.80 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_16 PF13191.1 185 1.2e-05 18.5 0.0 1 1 2.7e-07 3.3e-05 17.1 0.0 21 45 461 485 452 503 0.89 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 226 AAA_23 PF13476.1 202 1.8e-08 28.1 4.2 1 1 2e-10 2.4e-08 27.7 4.2 14 102 21 132 4 225 0.57 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_27 - 819 AAA_18 PF13238.1 129 0.00034 14.1 4.0 1 1 3.4e-06 0.00041 13.9 0.0 1 42 467 511 467 590 0.71 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 226 AAA_13 PF13166.1 712 0.00033 12.3 1.6 1 2 9e-06 0.0011 10.6 0.3 16 41 26 54 11 100 0.75 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_9 - 226 AAA_13 PF13166.1 712 0.00033 12.3 1.6 2 2 0.011 1.3 0.4 0.0 523 562 145 182 137 192 0.82 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_100 - 329 GFO_IDH_MocA PF01408.17 120 1.1e-05 19.1 0.0 1 2 1.1e-06 0.00013 15.7 0.0 3 76 150 217 148 236 0.79 # 88205 # 89191 # -1 # ID=1_100;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.379 1_100 - 329 GFO_IDH_MocA PF01408.17 120 1.1e-05 19.1 0.0 2 2 0.096 12 -0.3 0.0 81 97 255 271 240 278 0.87 # 88205 # 89191 # -1 # ID=1_100;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.379 1_118 - 250 CbiA PF01656.18 195 0.00036 13.1 0.0 1 1 6e-06 0.00072 12.1 0.0 3 103 104 236 103 242 0.59 # 103814 # 104563 # 1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_27 - 819 KaiC PF06745.8 227 6.2e-07 21.9 0.9 1 2 0.077 4.6 -0.6 0.2 96 127 324 381 284 401 0.55 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 KaiC PF06745.8 227 6.2e-07 21.9 0.9 2 2 5e-08 3e-06 19.6 0.0 13 93 458 538 451 596 0.79 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_118 - 250 KaiC PF06745.8 227 0.00051 12.3 0.0 1 1 2.7e-05 0.0016 10.7 0.0 16 54 97 134 54 242 0.90 # 103814 # 104563 # 1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_27 - 819 AAA_14 PF13173.1 128 2e-06 20.9 0.1 1 1 6e-07 2.4e-05 17.4 0.0 2 67 464 533 463 585 0.72 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 226 AAA_14 PF13173.1 128 1.1e-05 18.5 0.1 1 2 7.4e-05 0.0029 10.7 0.0 2 66 29 98 28 100 0.67 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_9 - 226 AAA_14 PF13173.1 128 1.1e-05 18.5 0.1 2 2 0.0024 0.095 5.8 0.0 60 97 141 189 106 202 0.66 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_118 - 250 AAA_14 PF13173.1 128 3.1e-05 17.1 0.2 1 1 5.9e-06 0.00023 14.2 0.0 3 84 101 184 99 203 0.71 # 103814 # 104563 # 1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_9 - 226 AAA_29 PF13555.1 62 2e-06 20.5 0.2 1 1 6.9e-08 4.2e-06 19.5 0.2 15 46 22 52 16 61 0.74 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_27 - 819 AAA_29 PF13555.1 62 0.00011 15.0 0.2 1 1 5.1e-06 0.00031 13.5 0.1 20 40 462 481 454 486 0.87 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA PF00004.24 132 3e-06 20.6 3.4 1 4 0.027 3.2 1.1 0.2 39 103 91 155 69 162 0.77 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA PF00004.24 132 3e-06 20.6 3.4 2 4 0.038 4.6 0.6 0.1 71 104 303 336 275 358 0.56 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA PF00004.24 132 3e-06 20.6 3.4 3 4 7.3e-06 0.00088 12.7 0.0 1 43 467 512 467 528 0.79 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA PF00004.24 132 3e-06 20.6 3.4 4 4 0.0078 0.94 2.9 0.0 48 106 673 720 636 743 0.75 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_118 - 250 Bac_DnaA PF00308.13 219 3.6e-07 23.2 0.0 1 1 4.9e-09 5.9e-07 22.5 0.0 34 135 100 199 82 208 0.86 # 103814 # 104563 # 1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_27 - 819 Sigma54_activat PF00158.21 168 0.0001 14.9 0.1 1 2 4.8e-06 0.00057 12.5 0.0 13 47 455 489 451 500 0.86 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 Sigma54_activat PF00158.21 168 0.0001 14.9 0.1 2 2 0.065 7.8 -0.9 0.0 144 167 511 533 508 534 0.80 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 226 MMR_HSR1 PF01926.18 116 0.00043 13.4 0.7 1 1 5.8e-06 0.00069 12.8 0.6 2 37 32 64 31 188 0.75 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_9 - 226 DUF258 PF03193.11 161 2.9e-05 16.5 0.5 1 1 4.8e-07 5.8e-05 15.5 0.5 20 66 13 60 3 75 0.80 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_31 - 643 TraG-D_C PF12696.2 128 1.9e-12 40.3 0.0 1 1 3.5e-14 4.1e-12 39.3 0.0 1 127 482 605 482 606 0.84 # 26981 # 28909 # -1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_100 - 329 NAD_binding_2 PF03446.10 163 1.1e-13 44.5 0.2 1 1 1.8e-15 2.1e-13 43.6 0.0 2 115 148 258 147 264 0.88 # 88205 # 89191 # -1 # ID=1_100;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.379 1_27 - 819 NTPase_1 PF03266.10 168 0.003 10.4 2.5 1 1 2.9e-05 0.0035 10.2 0.0 1 19 466 484 466 488 0.90 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_33 PF13671.1 143 0.00088 12.3 0.0 1 1 2.6e-05 0.0031 10.6 0.0 2 24 467 489 467 532 0.76 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_100 - 329 2-Hacid_dh_C PF02826.14 178 1.2e-68 222.9 0.0 1 1 1.8e-70 2.1e-68 222.1 0.0 1 178 110 288 110 288 0.98 # 88205 # 89191 # -1 # ID=1_100;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.379 1_9 - 226 AAA_30 PF13604.1 196 0.00046 12.9 0.1 1 1 1.1e-05 0.0014 11.4 0.0 15 48 26 59 14 71 0.82 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_31 - 643 FtsK_SpoIIIE PF01580.13 205 1.3e-06 21.2 0.0 1 2 5.6e-07 3.4e-05 16.6 0.0 4 91 153 236 150 243 0.87 # 26981 # 28909 # -1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_31 - 643 FtsK_SpoIIIE PF01580.13 205 1.3e-06 21.2 0.0 2 2 0.015 0.92 2.1 0.0 175 201 491 517 478 521 0.83 # 26981 # 28909 # -1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_27 - 819 FtsK_SpoIIIE PF01580.13 205 1.4e-05 17.8 0.9 1 2 0.018 1.1 1.9 0.6 114 183 271 340 269 352 0.75 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 FtsK_SpoIIIE PF01580.13 205 1.4e-05 17.8 0.9 2 2 9.9e-06 0.0006 12.5 0.0 25 58 451 484 430 509 0.72 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 226 ABC_tran PF00005.22 137 1.2e-27 90.1 0.1 1 1 3.2e-29 1.9e-27 89.4 0.1 1 137 19 160 19 160 0.85 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_27 - 819 ABC_tran PF00005.22 137 0.00026 14.5 0.4 1 1 5.6e-05 0.0033 10.9 0.0 12 74 465 528 455 601 0.72 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 DAP3 PF10236.4 309 0.00031 12.9 0.0 1 2 1.6e-05 0.002 10.2 0.0 19 58 460 499 448 522 0.80 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 DAP3 PF10236.4 309 0.00031 12.9 0.0 2 2 0.029 3.5 -0.5 0.0 129 158 566 593 526 599 0.79 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_19 PF13245.1 76 2.6e-06 20.3 0.0 1 1 6.5e-08 7.8e-06 18.8 0.0 2 62 456 512 455 541 0.77 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_10 PF12846.2 304 1.2e-43 142.8 0.1 1 1 6.4e-45 2.6e-43 141.7 0.1 1 303 464 761 464 762 0.94 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_31 - 643 AAA_10 PF12846.2 304 6.9e-18 58.2 0.1 1 1 2.6e-19 1e-17 57.6 0.1 1 299 188 558 188 560 0.69 # 26981 # 28909 # -1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_9 - 226 AAA_10 PF12846.2 304 4.5e-05 16.1 0.3 1 2 5.7e-05 0.0023 10.5 0.4 4 23 32 51 29 66 0.83 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_9 - 226 AAA_10 PF12846.2 304 4.5e-05 16.1 0.3 2 2 0.0083 0.33 3.4 0.0 216 268 145 196 126 216 0.75 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_9 - 226 SbcCD_C PF13558.1 90 0.00072 12.7 0.0 1 1 6.7e-05 0.0081 9.3 0.0 64 89 150 175 113 176 0.79 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_118 - 250 ResIII PF04851.10 184 0.00054 13.0 0.0 1 1 7.2e-06 0.00087 12.3 0.0 21 45 81 120 45 165 0.74 # 103814 # 104563 # 1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_27 - 819 Zot PF05707.7 193 1e-09 31.3 0.4 1 3 0.038 4.5 -0.2 0.0 27 64 128 165 120 185 0.61 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 Zot PF05707.7 193 1e-09 31.3 0.4 2 3 0.0038 0.45 3.1 0.0 4 16 468 480 467 484 0.88 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 Zot PF05707.7 193 1e-09 31.3 0.4 3 3 1.6e-09 1.9e-07 23.9 0.0 60 143 661 742 629 767 0.76 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 DUF2075 PF09848.4 352 1.4e-08 27.2 1.3 1 3 0.0042 0.51 2.3 0.3 145 201 27 82 16 88 0.72 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 DUF2075 PF09848.4 352 1.4e-08 27.2 1.3 2 3 9e-07 0.00011 14.4 0.0 4 88 467 547 464 580 0.75 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 DUF2075 PF09848.4 352 1.4e-08 27.2 1.3 3 3 0.00014 0.017 7.2 0.1 65 136 666 732 651 773 0.74 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_31 - 643 DUF853 PF05872.7 504 0.00018 13.1 0.0 1 1 3.4e-06 0.00041 11.9 0.0 5 73 172 240 168 261 0.86 # 26981 # 28909 # -1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_31 - 643 TrwB_AAD_bind PF10412.4 386 5.4e-10 31.5 0.0 1 2 6.8e-06 0.00041 12.2 0.0 15 54 188 227 180 231 0.92 # 26981 # 28909 # -1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_31 - 643 TrwB_AAD_bind PF10412.4 386 5.4e-10 31.5 0.0 2 2 2.7e-07 1.6e-05 16.8 0.0 204 372 439 611 431 618 0.74 # 26981 # 28909 # -1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_27 - 819 TrwB_AAD_bind PF10412.4 386 0.0003 12.6 0.0 1 1 1.6e-05 0.00097 10.9 0.0 15 61 464 510 457 515 0.90 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_11 PF13086.1 236 0.0016 11.2 0.6 1 3 0.036 4.3 -0.1 0.1 72 160 135 306 117 346 0.57 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_11 PF13086.1 236 0.0016 11.2 0.6 2 3 0.00033 0.039 6.6 0.1 7 36 454 483 452 515 0.77 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_11 PF13086.1 236 0.0016 11.2 0.6 3 3 0.037 4.5 -0.1 0.0 164 197 540 583 501 583 0.65 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 Sigma54_activ_2 PF14532.1 138 0.00013 15.2 0.0 1 1 2.9e-06 0.00034 13.8 0.0 11 41 454 484 452 495 0.90 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 226 ArgK PF03308.11 267 0.00021 13.2 0.2 1 1 6.1e-06 0.00037 12.5 0.2 14 50 14 50 4 61 0.85 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_27 - 819 ArgK PF03308.11 267 0.00025 13.0 0.0 1 1 9.4e-06 0.00056 11.9 0.0 31 71 466 504 442 506 0.79 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 226 GTP_EFTU PF00009.22 188 0.0004 13.0 0.0 1 1 5.5e-06 0.00066 12.3 0.0 3 56 29 80 27 99 0.70 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_100 - 329 IlvN PF07991.7 165 1.3e-07 24.3 0.1 1 2 0.027 3.2 0.2 0.0 29 68 74 113 61 132 0.61 # 88205 # 89191 # -1 # ID=1_100;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.379 1_100 - 329 IlvN PF07991.7 165 1.3e-07 24.3 0.1 2 2 7e-09 8.4e-07 21.6 0.0 4 71 147 212 144 250 0.84 # 88205 # 89191 # -1 # ID=1_100;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.379 1_58 - 110 tRNA_anti-codon PF01336.20 75 0.00013 14.9 0.0 1 1 1.8e-06 0.00022 14.3 0.0 25 73 44 97 31 98 0.88 # 57959 # 58288 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_9 - 226 NACHT PF05729.7 166 0.00045 13.1 0.7 1 1 7.7e-05 0.0046 9.8 0.7 5 22 34 51 30 196 0.96 # 5844 # 6521 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_27 - 819 NACHT PF05729.7 166 0.0011 11.9 0.0 1 1 4.4e-05 0.0027 10.6 0.0 3 20 467 484 466 488 0.89 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_25 PF13481.1 194 4.7e-05 16.0 0.0 1 1 1.6e-06 0.00019 14.0 0.0 26 157 457 571 450 593 0.64 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_28 PF13521.1 163 0.00019 14.6 0.0 1 2 0.053 6.3 -0.1 0.1 110 160 111 160 94 162 0.80 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_28 PF13521.1 163 0.00019 14.6 0.0 2 2 1.8e-05 0.0022 11.1 0.0 2 20 467 485 466 550 0.66 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_27 - 819 AAA_5 PF07728.9 139 0.0006 12.7 0.0 1 1 2.3e-05 0.0028 10.6 0.0 1 19 466 484 466 500 0.82 # 22785 # 25241 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.394 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bc1754e6-8313-4035-b78a-525c525d2c1e # Target file: checkm_output/bins/pCP001880.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP001880.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bc1754e6-8313-4035-b78a-525c525d2c1e checkm_output/bins/pCP001880.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:58 2020 # [ok]