# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 71 Ribosomal_L29 PF00831.18 58 0.0045 7.5 9.4 1 3 0.00083 0.018 5.6 5.9 7 36 1 30 1 40 0.83 # 2217 # 2429 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.385 1_7 - 71 Ribosomal_L29 PF00831.18 58 0.0045 7.5 9.4 2 3 0.0023 0.051 4.2 1.6 8 29 21 42 17 50 0.81 # 2217 # 2429 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.385 1_7 - 71 Ribosomal_L29 PF00831.18 58 0.0045 7.5 9.4 3 3 0.07 1.5 -0.6 0.0 45 54 53 62 48 65 0.86 # 2217 # 2429 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.385 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/36ebe1c9-c2d1-47ea-b8a6-7bdc4e5cb465 # Target file: checkm_output/bins/pCP001749.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP001749.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/36ebe1c9-c2d1-47ea-b8a6-7bdc4e5cb465 checkm_output/bins/pCP001749.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:54 2020 # [ok]