# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_38 - 289 MipZ PF09140.6 261 8.1e-15 47.5 0.1 1 2 1.3e-11 1.4e-09 30.3 0.1 3 56 9 62 7 86 0.90 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_38 - 289 MipZ PF09140.6 261 8.1e-15 47.5 0.1 2 2 5.8e-07 6e-05 15.1 0.0 76 125 120 169 88 179 0.82 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_38 - 289 YhjQ PF06564.7 244 4.4e-08 25.7 0.0 1 1 3.2e-09 3.3e-07 22.8 0.0 10 149 15 174 8 180 0.72 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_21 - 444 DUF87 PF01935.12 229 0.00028 13.7 0.2 1 2 0.047 2.4 0.8 0.1 94 164 16 129 13 149 0.61 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_21 - 444 DUF87 PF01935.12 229 0.00028 13.7 0.2 2 2 6.9e-05 0.0035 10.1 0.0 26 45 215 234 212 253 0.82 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_8 - 645 DUF87 PF01935.12 229 0.00036 13.3 2.0 1 2 0.00023 0.012 8.4 0.1 28 68 252 291 251 320 0.78 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 645 DUF87 PF01935.12 229 0.00036 13.3 2.0 2 2 0.014 0.72 2.5 0.0 143 220 400 470 338 478 0.84 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_88 - 518 NB-ARC PF00931.17 287 4.6e-05 15.3 3.1 1 2 4.8e-06 0.0005 11.9 0.4 24 76 57 107 47 242 0.86 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 NB-ARC PF00931.17 287 4.6e-05 15.3 3.1 2 2 0.0031 0.32 2.7 0.1 52 96 304 347 290 361 0.79 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 AAA_22 PF13401.1 131 4.5e-06 19.8 4.5 1 3 8.6e-06 0.00029 13.9 0.1 8 56 56 99 50 154 0.80 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 AAA_22 PF13401.1 131 4.5e-06 19.8 4.5 2 3 0.01 0.34 4.0 0.6 74 121 207 276 140 285 0.65 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 AAA_22 PF13401.1 131 4.5e-06 19.8 4.5 3 3 0.094 3.2 0.9 0.0 37 78 301 344 282 361 0.60 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_21 - 444 AAA_22 PF13401.1 131 0.00016 14.8 0.0 1 1 1.3e-05 0.00044 13.3 0.0 2 28 210 236 209 319 0.75 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_8 - 645 AAA_22 PF13401.1 131 0.00063 12.9 0.4 1 1 9.3e-05 0.0032 10.6 0.1 6 28 249 271 244 297 0.86 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_38 - 289 ATP_bind_1 PF03029.12 238 7.5e-07 21.8 0.6 1 1 2.9e-08 3e-06 19.8 0.6 6 163 17 207 15 251 0.79 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_88 - 518 Trp_halogenase PF04820.9 454 0.00028 12.5 0.0 1 1 4.2e-06 0.00043 11.9 0.0 88 165 286 364 282 379 0.91 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_38 - 289 AAA_17 PF13207.1 121 2e-05 18.4 0.0 1 1 1.4e-05 0.00037 14.3 0.0 9 60 17 75 16 198 0.72 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 645 AAA_17 PF13207.1 121 0.00018 15.3 0.3 1 1 2.8e-05 0.00072 13.4 0.0 3 23 251 271 251 335 0.81 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_21 - 444 AAA_17 PF13207.1 121 0.00032 14.5 1.5 1 2 0.029 0.76 3.6 0.8 70 100 35 83 6 185 0.64 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_21 - 444 AAA_17 PF13207.1 121 0.00032 14.5 1.5 2 2 0.001 0.026 8.3 0.0 2 34 215 244 214 346 0.65 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_88 - 518 AAA_17 PF13207.1 121 0.00063 13.5 4.1 1 1 4.3e-05 0.0011 12.8 0.2 2 78 55 143 54 176 0.48 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_8 - 645 Miro PF08477.8 119 0.00014 15.3 0.0 1 1 1e-05 0.00053 13.5 0.0 3 62 251 309 250 322 0.76 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_88 - 518 Miro PF08477.8 119 0.00023 14.6 0.1 1 1 2.1e-05 0.0011 12.5 0.0 1 74 54 117 54 126 0.72 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_38 - 289 MobB PF03205.9 140 0.00069 12.3 0.1 1 1 1.5e-05 0.0016 11.1 0.1 9 46 16 51 8 64 0.88 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_38 - 289 ArsA_ATPase PF02374.10 305 1.9e-08 26.6 0.2 1 1 1.2e-09 1.2e-07 23.9 0.2 8 137 14 153 7 156 0.63 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_21 - 444 T2SE PF00437.15 272 1.2e-36 118.9 0.0 1 1 3.6e-38 1.8e-36 118.3 0.0 10 264 95 352 86 360 0.87 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_88 - 518 T2SE PF00437.15 272 0.00035 12.5 0.0 1 1 1.2e-05 0.00062 11.6 0.0 121 156 50 80 27 95 0.82 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 Zeta_toxin PF06414.7 201 9.9e-06 17.7 0.0 1 1 7.2e-07 3.7e-05 15.8 0.0 7 48 43 86 37 99 0.81 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_8 - 645 Zeta_toxin PF06414.7 201 0.00074 11.6 1.6 1 2 0.016 0.82 1.6 0.3 98 133 142 178 95 185 0.83 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 645 Zeta_toxin PF06414.7 201 0.00074 11.6 1.6 2 2 0.00016 0.0081 8.2 0.0 20 56 251 287 242 300 0.84 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_38 - 289 Fer4_NifH PF00142.13 273 3.6e-08 25.8 0.0 1 1 9.9e-10 1e-07 24.3 0.0 7 49 14 56 9 89 0.86 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_88 - 518 Arch_ATPase PF01637.13 234 0.00075 12.2 17.6 1 2 3.8e-05 0.0039 9.8 9.6 23 160 55 263 44 266 0.76 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 Arch_ATPase PF01637.13 234 0.00075 12.2 17.6 2 2 0.008 0.83 2.2 0.5 104 141 258 298 255 336 0.77 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 AAA_16 PF13191.1 185 9.9e-06 18.6 0.0 1 1 3.6e-06 0.00013 15.0 0.0 25 165 53 239 48 264 0.64 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_21 - 444 AAA_16 PF13191.1 185 5.2e-05 16.2 0.0 1 1 3.8e-06 0.00013 14.9 0.0 22 49 210 237 199 267 0.81 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_38 - 289 AAA_16 PF13191.1 185 9.4e-05 15.4 0.0 1 1 5.8e-06 0.0002 14.3 0.0 34 84 17 81 15 150 0.66 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_21 - 444 AAA_23 PF13476.1 202 0.00029 14.1 0.3 1 1 5.6e-06 0.00029 14.1 0.3 5 37 191 230 188 236 0.89 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_8 - 645 AAA_23 PF13476.1 202 0.00073 12.8 1.6 1 2 0.012 0.62 3.3 0.5 108 165 109 162 17 193 0.49 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 645 AAA_23 PF13476.1 202 0.00073 12.8 1.6 2 2 0.00052 0.027 7.7 0.0 24 37 252 265 251 370 0.90 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 645 AAA_18 PF13238.1 129 3e-05 17.3 2.7 1 1 1.3e-06 3.4e-05 17.1 0.0 2 40 251 286 251 327 0.73 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_21 - 444 AAA_18 PF13238.1 129 0.0001 15.5 2.3 1 1 1.9e-05 0.0005 13.3 0.0 1 68 215 286 215 322 0.63 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_38 - 289 AAA_18 PF13238.1 129 0.00081 12.7 1.2 1 1 0.00016 0.0042 10.4 0.2 8 62 17 78 15 159 0.63 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_88 - 518 AAA_18 PF13238.1 129 0.002 11.4 7.6 1 2 0.00046 0.012 8.9 0.0 2 23 56 91 56 161 0.76 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 AAA_18 PF13238.1 129 0.002 11.4 7.6 2 2 0.01 0.27 4.5 0.9 22 82 282 349 265 383 0.75 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_38 - 289 CbiA PF01656.18 195 2.2e-34 111.5 0.0 1 1 2.6e-36 2.7e-34 111.2 0.0 1 194 9 246 9 247 0.80 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 645 AAA_14 PF13173.1 128 6.9e-06 19.0 0.6 1 2 6.3e-05 0.0065 9.3 0.1 7 86 252 357 249 365 0.68 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 645 AAA_14 PF13173.1 128 6.9e-06 19.0 0.6 2 2 0.00047 0.049 6.5 0.1 28 78 451 525 432 562 0.55 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_88 - 518 SRPRB PF09439.5 181 8.2e-06 18.1 0.1 1 1 1.4e-07 1.5e-05 17.3 0.1 4 103 53 147 50 222 0.83 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 AAA PF00004.24 132 3.8e-05 16.9 7.8 1 2 2.3e-05 0.0024 11.1 0.5 2 31 56 88 55 196 0.72 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 AAA PF00004.24 132 3.8e-05 16.9 7.8 2 2 0.0003 0.031 7.4 1.6 48 116 215 287 194 305 0.69 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_77 - 484 PAPS_reduct PF01507.14 174 0.00093 12.0 1.3 1 2 0.02 2.1 1.1 0.1 33 63 167 195 150 240 0.75 # 68895 # 70346 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.273 1_77 - 484 PAPS_reduct PF01507.14 174 0.00093 12.0 1.3 2 2 8.4e-05 0.0087 8.8 0.1 124 168 322 365 308 370 0.88 # 68895 # 70346 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.273 1_21 - 444 Sigma54_activat PF00158.21 168 2e-05 17.0 0.0 1 1 8.1e-07 4.2e-05 16.0 0.0 15 51 205 241 195 258 0.81 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_88 - 518 Sigma54_activat PF00158.21 168 3.7e-05 16.2 0.0 1 1 1.4e-06 7.2e-05 15.2 0.0 22 56 52 86 34 96 0.86 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_8 - 645 MMR_HSR1 PF01926.18 116 0.00014 14.8 0.0 1 1 3.2e-05 0.0016 11.3 0.0 4 62 252 308 250 371 0.67 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_38 - 289 MMR_HSR1 PF01926.18 116 0.00017 14.5 0.0 1 1 6.5e-05 0.0033 10.3 0.0 10 58 18 154 15 228 0.61 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 645 DUF258 PF03193.11 161 0.00091 11.4 0.2 1 1 6.4e-05 0.0033 9.6 0.0 39 66 251 278 244 353 0.71 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_38 - 289 DUF258 PF03193.11 161 0.0011 11.1 0.0 1 1 4.2e-05 0.0022 10.2 0.0 39 82 11 54 4 68 0.78 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_14 - 273 TraG-D_C PF12696.2 128 6.5e-19 61.0 1.9 1 1 1.8e-20 9.1e-19 60.6 1.2 31 125 2 87 1 89 0.82 # 12063 # 12881 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_15 - 606 TraG-D_C PF12696.2 128 0.00011 15.1 0.0 1 1 5e-06 0.00026 13.8 0.0 1 18 585 602 585 604 0.94 # 12902 # 14719 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_38 - 289 AAA_31 PF13614.1 157 3.8e-11 36.1 1.0 1 2 3.1e-11 3.2e-09 29.8 0.6 3 134 9 159 8 178 0.72 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_38 - 289 AAA_31 PF13614.1 157 3.8e-11 36.1 1.0 2 2 0.027 2.7 0.8 0.0 80 121 159 200 153 219 0.84 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 645 NTPase_1 PF03266.10 168 0.00014 14.6 0.2 1 1 4.9e-06 0.0005 12.7 0.1 3 55 251 303 250 330 0.82 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_21 - 444 FtsK_SpoIIIE PF01580.13 205 0.0004 12.8 0.0 1 1 7.6e-06 0.00079 11.9 0.0 33 56 207 230 194 240 0.80 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_21 - 444 ABC_tran PF00005.22 137 4.7e-05 16.7 0.0 1 1 3.4e-06 0.00012 15.4 0.0 9 51 210 252 203 348 0.78 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_88 - 518 ABC_tran PF00005.22 137 0.00022 14.5 0.0 1 1 1.7e-05 0.00059 13.1 0.0 11 61 52 110 46 187 0.74 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_8 - 645 ABC_tran PF00005.22 137 0.00045 13.5 0.2 1 1 3.7e-05 0.0013 12.0 0.0 16 32 252 268 243 367 0.92 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 645 AAA_10 PF12846.2 304 4.5e-60 196.5 0.7 1 1 1.7e-61 5.8e-60 196.1 0.1 3 301 249 598 247 602 0.90 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_38 - 289 AAA_10 PF12846.2 304 5.6e-05 15.6 0.2 1 1 2e-06 6.9e-05 15.3 0.2 11 101 17 127 10 280 0.70 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_15 - 606 AAA_10 PF12846.2 304 0.00013 14.4 0.1 1 1 8.8e-06 0.0003 13.2 0.1 3 141 178 339 176 427 0.65 # 12902 # 14719 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_8 - 645 ResIII PF04851.10 184 0.00063 12.5 0.9 1 1 1.2e-05 0.0012 11.6 0.1 88 170 451 535 423 550 0.66 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 645 Zot PF05707.7 193 2.2e-06 20.2 0.8 1 2 0.062 6.3 -0.9 0.1 4 15 251 262 250 268 0.89 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 645 Zot PF05707.7 193 2.2e-06 20.2 0.8 2 2 1.1e-07 1.1e-05 17.9 0.1 34 129 458 556 444 557 0.66 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_88 - 518 DUF2075 PF09848.4 352 6.9e-05 14.8 0.6 1 2 4.9e-06 0.0005 12.0 0.3 4 75 55 124 52 274 0.78 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 DUF2075 PF09848.4 352 6.9e-05 14.8 0.6 2 2 0.092 9.5 -2.1 0.0 123 166 419 464 380 476 0.64 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_60 - 510 SPOUT_MTase PF02590.12 155 0.00058 12.5 0.5 1 2 3.5e-05 0.0036 10.0 0.0 13 87 278 354 269 366 0.83 # 52767 # 54296 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 1_60 - 510 SPOUT_MTase PF02590.12 155 0.00058 12.5 0.5 2 2 0.078 8 -0.9 0.0 15 44 431 460 426 475 0.72 # 52767 # 54296 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 1_88 - 518 DEAD PF00270.24 169 4.1e-05 16.1 0.1 1 1 7.5e-06 0.00077 11.9 0.1 8 132 46 290 41 309 0.60 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_14 - 273 TrwB_AAD_bind PF10412.4 386 8.2e-08 24.1 0.3 1 1 5.3e-09 1.8e-07 23.0 0.3 277 364 5 87 2 102 0.85 # 12063 # 12881 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_15 - 606 TrwB_AAD_bind PF10412.4 386 7.2e-06 17.7 0.0 1 2 2.4e-06 8.4e-05 14.2 0.0 13 162 174 344 168 355 0.84 # 12902 # 14719 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_15 - 606 TrwB_AAD_bind PF10412.4 386 7.2e-06 17.7 0.0 2 2 0.026 0.89 0.9 0.0 222 260 558 601 538 603 0.61 # 12902 # 14719 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_21 - 444 TrwB_AAD_bind PF10412.4 386 8.2e-05 14.2 0.0 1 1 4e-06 0.00014 13.5 0.0 15 62 212 259 206 314 0.75 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_88 - 518 Sigma54_activ_2 PF14532.1 138 0.00086 12.3 0.0 1 1 2.3e-05 0.0024 10.9 0.0 25 49 56 80 45 97 0.85 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_15 - 606 T4SS-DNA_transf PF02534.9 469 4.4e-29 94.2 1.3 1 2 2.8e-25 1.5e-23 76.0 0.4 31 258 164 409 134 414 0.73 # 12902 # 14719 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_15 - 606 T4SS-DNA_transf PF02534.9 469 4.4e-29 94.2 1.3 2 2 2.3e-07 1.2e-05 17.0 0.0 259 314 539 595 518 602 0.92 # 12902 # 14719 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_14 - 273 T4SS-DNA_transf PF02534.9 469 1.3e-10 33.3 1.1 1 1 2.5e-12 1.3e-10 33.3 1.1 335 433 3 97 1 127 0.80 # 12063 # 12881 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_91 - 502 NAD_binding_5 PF07994.7 295 0.0041 9.5 2.7 1 1 3.2e-05 0.0033 9.8 0.9 58 189 175 326 149 330 0.83 # 82484 # 83989 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.299 1_38 - 289 ArgK PF03308.11 267 1.1e-05 17.3 0.0 1 1 1.9e-07 1.9e-05 16.5 0.0 38 82 16 59 6 91 0.85 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_88 - 518 RNA_helicase PF00910.17 107 0.00015 14.9 0.4 1 2 0.00038 0.019 8.1 0.1 2 26 56 80 55 97 0.71 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 RNA_helicase PF00910.17 107 0.00015 14.9 0.4 2 2 0.014 0.72 3.1 0.0 49 94 224 272 199 278 0.82 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_21 - 444 RNA_helicase PF00910.17 107 0.00021 14.4 0.0 1 1 1.3e-05 0.00069 12.8 0.0 1 75 215 292 215 317 0.75 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_8 - 645 AAA_24 PF13479.1 213 0.00042 12.9 0.1 1 1 1.7e-05 0.0017 10.9 0.0 3 27 247 271 245 279 0.86 # 5629 # 7563 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_88 - 518 NACHT PF05729.7 166 2.1e-07 23.7 0.1 1 2 8.3e-06 0.00086 11.9 0.0 4 29 56 81 53 94 0.88 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_88 - 518 NACHT PF05729.7 166 2.1e-07 23.7 0.1 2 2 7.7e-05 0.008 8.8 0.0 50 100 193 251 186 302 0.69 # 79273 # 80826 # -1 # ID=1_88;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_38 - 289 AAA_25 PF13481.1 194 0.00042 12.7 0.0 1 2 2.6e-05 0.0027 10.0 0.0 37 73 11 49 5 54 0.84 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_38 - 289 AAA_25 PF13481.1 194 0.00042 12.7 0.0 2 2 0.05 5.1 -0.6 0.0 130 150 132 150 112 154 0.81 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_38 - 289 AAA_5 PF07728.9 139 3.9e-05 16.4 0.0 1 1 1.2e-06 6.3e-05 15.7 0.0 9 67 17 79 15 108 0.86 # 35554 # 36420 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_21 - 444 AAA_5 PF07728.9 139 0.00066 12.4 0.0 1 1 2.8e-05 0.0014 11.3 0.0 1 32 214 245 214 307 0.84 # 19502 # 20833 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/03f71e20-dc99-4a44-984d-641397c69259 # Target file: checkm_output/bins/pCP001748.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP001748.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/03f71e20-dc99-4a44-984d-641397c69259 checkm_output/bins/pCP001748.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:55 2020 # [ok]