# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_16 - 92 ATP_bind_3 PF01171.15 182 0.001 12.4 0.0 1 1 5.5e-06 0.0011 12.4 0.0 3 27 23 47 21 87 0.84 # 12072 # 12347 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 3_32 - 364 UPF0020 PF01170.13 180 6.4e-05 16.4 0.1 1 1 1.8e-06 0.00034 14.0 0.1 31 152 35 146 20 162 0.77 # 29432 # 30523 # 1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_9 - 709 Seryl_tRNA_N PF02403.17 108 0.0059 10.5 100.3 1 7 0.00016 0.032 8.1 10.9 41 99 260 321 252 328 0.70 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_9 - 709 Seryl_tRNA_N PF02403.17 108 0.0059 10.5 100.3 2 7 0.001 0.2 5.6 12.6 18 106 395 478 389 480 0.65 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_9 - 709 Seryl_tRNA_N PF02403.17 108 0.0059 10.5 100.3 3 7 0.002 0.38 4.7 17.3 26 99 436 509 411 513 0.56 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_9 - 709 Seryl_tRNA_N PF02403.17 108 0.0059 10.5 100.3 4 7 4.2e-05 0.0082 10.0 10.9 37 103 512 579 511 582 0.95 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_9 - 709 Seryl_tRNA_N PF02403.17 108 0.0059 10.5 100.3 5 7 3.1e-05 0.0059 10.5 14.3 11 104 531 625 528 634 0.85 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_9 - 709 Seryl_tRNA_N PF02403.17 108 0.0059 10.5 100.3 6 7 0.006 1.2 3.1 10.0 33 99 592 660 584 667 0.62 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_9 - 709 Seryl_tRNA_N PF02403.17 108 0.0059 10.5 100.3 7 7 0.0027 0.52 4.2 5.3 44 104 636 700 631 706 0.47 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_43 - 273 FeoB_N PF02421.13 156 0.0013 11.8 1.0 1 2 0.0084 1.6 1.8 0.0 6 24 12 30 7 37 0.73 # 42847 # 43665 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_43 - 273 FeoB_N PF02421.13 156 0.0013 11.8 1.0 2 2 8.4e-05 0.016 8.3 0.3 77 123 158 209 129 221 0.80 # 42847 # 43665 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_43 - 273 MipZ PF09140.6 261 0.00035 13.5 0.1 1 2 1.1e-05 0.0021 11.0 0.1 11 134 16 134 6 141 0.63 # 42847 # 43665 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_43 - 273 MipZ PF09140.6 261 0.00035 13.5 0.1 2 2 0.0046 0.88 2.4 0.0 77 129 118 168 78 170 0.53 # 42847 # 43665 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_4 - 444 3HCDH_N PF02737.13 180 3.2e-05 17.5 0.0 1 2 8.6e-07 0.00017 15.1 0.0 2 49 3 50 2 84 0.75 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 444 3HCDH_N PF02737.13 180 3.2e-05 17.5 0.0 2 2 0.08 15 -1.0 0.0 14 45 334 370 332 395 0.65 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_42 - 478 AAA_2 PF07724.9 171 0.00079 13.2 1.4 1 2 0.024 4.5 0.9 0.0 4 45 184 225 183 234 0.85 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_42 - 478 AAA_2 PF07724.9 171 0.00079 13.2 1.4 2 2 3.4e-05 0.0065 10.2 0.0 2 42 234 276 233 282 0.84 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_22 - 700 DUF87 PF01935.12 229 4.2e-08 27.1 2.8 1 1 1.7e-09 1.6e-07 25.1 0.0 26 102 282 352 280 543 0.63 # 25215 # 27314 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_42 - 478 DUF87 PF01935.12 229 5.8e-05 16.8 0.5 1 1 1.7e-06 0.00016 15.3 0.1 25 57 237 270 213 274 0.75 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 4_16 - 489 AAA_22 PF13401.1 131 5.5e-06 20.4 0.2 1 1 4.9e-06 0.00047 14.1 0.1 4 124 203 305 199 312 0.62 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_42 - 478 AAA_22 PF13401.1 131 1.3e-05 19.2 0.0 1 1 3.7e-07 3.5e-05 17.8 0.0 3 69 234 325 231 382 0.85 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_53 - 379 ATP_bind_1 PF03029.12 238 0.001 12.5 0.2 1 1 9.9e-06 0.0019 11.6 0.2 157 237 155 233 129 234 0.83 # 53535 # 54671 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.320 4_16 - 489 AAA_3 PF07726.6 131 0.00089 12.7 0.0 1 1 1e-05 0.0019 11.6 0.0 3 91 207 298 205 306 0.78 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_4 - 444 NAD_binding_7 PF13241.1 103 0.0018 12.4 1.4 1 2 0.00048 0.091 6.9 0.1 9 90 2 106 1 118 0.62 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 444 NAD_binding_7 PF13241.1 103 0.0018 12.4 1.4 2 2 0.0056 1.1 3.5 0.1 23 74 335 390 335 405 0.70 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 4_16 - 489 AAA_17 PF13207.1 121 2.6e-05 18.9 0.4 1 1 6.4e-06 0.00041 15.0 0.0 3 40 207 255 206 279 0.72 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_42 - 478 AAA_17 PF13207.1 121 4.2e-05 18.2 0.3 1 1 2.5e-06 0.00016 16.3 0.0 2 23 238 259 237 409 0.75 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_22 - 700 AAA_17 PF13207.1 121 0.08 7.6 6.4 1 1 0.00031 0.02 9.6 1.8 2 22 282 303 281 588 0.82 # 25215 # 27314 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_43 - 273 MobB PF03205.9 140 0.00024 14.6 0.0 1 1 3e-06 0.00058 13.4 0.0 8 38 14 44 7 106 0.86 # 42847 # 43665 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 3_6 - 465 AAA_4 PF04326.9 122 4.5e-20 65.9 1.1 1 1 5.1e-22 9.8e-20 64.8 1.1 1 122 306 444 306 444 0.94 # 4265 # 5659 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.299 1_43 - 273 ArsA_ATPase PF02374.10 305 0.00038 13.3 0.3 1 1 4.2e-06 0.0008 12.3 0.1 12 38 17 43 8 147 0.71 # 42847 # 43665 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 4_16 - 489 PhoH PF02562.11 205 1.5e-07 24.7 0.5 1 2 1e-05 0.0019 11.2 0.0 5 40 187 224 183 238 0.79 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 4_16 - 489 PhoH PF02562.11 205 1.5e-07 24.7 0.5 2 2 9.2e-06 0.0018 11.4 0.1 117 170 267 322 242 342 0.74 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_42 - 478 MCM PF00493.18 331 4.3e-05 16.2 0.0 1 1 5.2e-07 0.0001 15.0 0.0 53 84 231 262 221 268 0.90 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_42 - 478 T2SE PF00437.15 272 1.7e-46 152.1 0.0 1 1 3.1e-48 3e-46 151.3 0.0 5 270 111 391 108 393 0.91 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 4_16 - 489 T2SE PF00437.15 272 0.00035 13.3 0.0 1 1 7.1e-06 0.00068 12.4 0.0 107 162 185 236 170 279 0.72 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_51 - 493 AAA_26 PF13500.1 199 0.00096 12.6 0.0 1 1 1.6e-05 0.003 11.0 0.0 1 34 219 252 219 336 0.86 # 50373 # 51851 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_4 - 444 NAD_binding_8 PF13450.1 68 0.00055 13.8 0.1 1 1 6.8e-06 0.0013 12.6 0.1 1 27 5 31 5 34 0.94 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 444 FAD_binding_3 PF01494.14 356 4.1e-05 16.5 0.1 1 1 4.9e-07 9.5e-05 15.3 0.0 4 40 3 39 1 47 0.91 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_16 - 92 TIGR02432 TIGR02432 189 0.00012 15.6 0.0 1 1 6.6e-07 0.00013 15.5 0.0 3 27 23 47 21 88 0.84 # 12072 # 12347 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 1_43 - 273 Fer4_NifH PF00142.13 273 0.0011 12.0 0.0 1 1 8.6e-06 0.0017 11.4 0.0 2 63 7 70 6 90 0.74 # 42847 # 43665 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 3_6 - 465 AAA_23 PF13476.1 202 0.00015 16.0 9.2 1 1 2.3e-06 0.00044 14.4 9.0 1 78 5 83 5 456 0.80 # 4265 # 5659 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.299 1_42 - 478 AAA_18 PF13238.1 129 2.8e-05 18.3 0.1 1 1 3.3e-06 0.00021 15.5 0.0 1 36 238 280 238 360 0.67 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 4_16 - 489 AAA_18 PF13238.1 129 0.00068 13.8 1.8 1 1 2.4e-05 0.0015 12.7 0.3 2 67 207 297 207 399 0.74 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_22 - 700 AAA_18 PF13238.1 129 0.053 7.7 6.5 1 1 0.00085 0.055 7.6 2.8 1 68 282 369 282 486 0.78 # 25215 # 27314 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_9 - 709 AAA_13 PF13166.1 712 3.2e-05 16.3 91.6 1 3 0.049 9.5 -1.7 31.2 308 466 255 418 248 419 0.53 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_9 - 709 AAA_13 PF13166.1 712 3.2e-05 16.3 91.6 2 3 2.3e-06 0.00044 12.6 41.8 276 472 365 556 359 566 0.80 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_9 - 709 AAA_13 PF13166.1 712 3.2e-05 16.3 91.6 3 3 1e-06 0.0002 13.7 19.5 291 432 564 706 560 708 0.86 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_43 - 273 CbiA PF01656.18 195 9.1e-12 38.6 0.1 1 1 7.2e-14 1.4e-11 38.0 0.1 1 169 8 212 8 227 0.73 # 42847 # 43665 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_42 - 478 IIGP PF05049.8 376 7.2e-05 15.5 0.2 1 2 0.005 0.95 1.9 0.2 145 249 24 137 7 143 0.67 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_42 - 478 IIGP PF05049.8 376 7.2e-05 15.5 0.2 2 2 9.2e-06 0.0018 10.9 0.0 22 55 222 255 205 288 0.79 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 3_29 - 235 Ribosomal_S13 PF00416.17 107 0.00079 13.7 1.0 1 1 6.1e-06 0.0012 13.2 0.2 33 89 62 119 25 124 0.72 # 27506 # 28210 # -1 # ID=3_29;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.295 3_32 - 364 Methyltransf_25 PF13649.1 101 1.7e-05 19.0 0.2 1 1 3.2e-07 6.1e-05 17.2 0.0 3 73 38 103 36 134 0.84 # 29432 # 30523 # 1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 4_16 - 489 AAA_14 PF13173.1 128 2.4e-07 24.6 3.3 1 2 2.2e-09 4.2e-07 23.7 0.2 4 85 205 295 203 304 0.69 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 4_16 - 489 AAA_14 PF13173.1 128 2.4e-07 24.6 3.3 2 2 0.06 12 -0.3 0.0 52 77 358 381 312 387 0.64 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 3_6 - 465 AAA_29 PF13555.1 62 0.00043 13.7 0.0 1 1 4.9e-06 0.00094 12.6 0.0 2 54 4 55 3 62 0.89 # 4265 # 5659 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.299 4_16 - 489 AAA PF00004.24 132 2.5e-05 18.3 0.0 1 1 3.4e-07 6.6e-05 17.0 0.0 3 74 208 285 206 298 0.69 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 7_1 - 134 Ubie_methyltran PF01209.13 233 0.0011 11.9 0.0 1 1 6.8e-06 0.0013 11.7 0.0 91 177 33 122 16 126 0.81 # 2 # 403 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.338 1_58 - 436 PGK PF00162.14 384 0.00014 14.3 0.1 1 1 1.4e-06 0.00027 13.3 0.1 98 156 170 225 154 237 0.80 # 57899 # 59206 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.344 3_16 - 92 PAPS_reduct PF01507.14 174 6.7e-06 19.8 0.0 1 1 4.4e-08 8.5e-06 19.5 0.0 3 51 23 80 21 89 0.76 # 12072 # 12347 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 1_42 - 478 Sigma54_activat PF00158.21 168 1.4e-05 18.4 0.0 1 1 1.8e-07 3.5e-05 17.2 0.0 4 50 217 263 214 283 0.78 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 3_32 - 364 N6_Mtase PF02384.11 311 1e-06 21.8 0.7 1 1 5.4e-08 1e-05 18.5 0.7 26 180 10 140 5 264 0.70 # 29432 # 30523 # 1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_42 - 478 DUF258 PF03193.11 161 0.00033 13.7 0.0 1 1 3.5e-06 0.00066 12.7 0.0 5 59 204 259 200 329 0.87 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_61 - 1110 TraG-D_C PF12696.2 128 1.7e-13 44.4 0.9 1 1 3.9e-15 7.5e-13 42.3 0.0 3 125 539 659 538 661 0.84 # 61524 # 64853 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_4 - 444 NAD_binding_2 PF03446.10 163 1.3e-08 28.7 0.5 1 2 6.1e-05 0.012 9.3 0.1 3 43 2 42 1 140 0.68 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 444 NAD_binding_2 PF03446.10 163 1.3e-08 28.7 0.5 2 2 2.8e-07 5.5e-05 16.9 0.0 15 93 333 409 332 423 0.89 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_43 - 273 AAA_31 PF13614.1 157 6.1e-21 68.8 0.1 1 1 1.1e-22 1.1e-20 68.0 0.1 1 152 6 171 6 174 0.85 # 42847 # 43665 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_51 - 493 AAA_31 PF13614.1 157 3.1e-07 24.3 0.1 1 1 7.3e-09 7e-07 23.1 0.1 1 152 219 374 219 379 0.79 # 50373 # 51851 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.349 4_16 - 489 DnaB_C PF03796.10 259 0.00014 14.6 0.3 1 2 0.0011 0.21 4.2 0.0 19 49 203 233 195 238 0.83 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 4_16 - 489 DnaB_C PF03796.10 259 0.00014 14.6 0.3 2 2 6.7e-05 0.013 8.2 0.2 93 156 262 324 234 339 0.75 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 3_32 - 364 Methyltransf_26 PF13659.1 117 1.5e-14 47.9 0.0 1 1 1.6e-16 3e-14 46.9 0.0 4 116 36 144 34 145 0.90 # 29432 # 30523 # 1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_4 - 444 NAD_Gly3P_dh_N PF01210.18 157 0.00012 15.7 1.2 1 1 2.8e-06 0.00054 13.5 0.1 2 138 3 155 2 178 0.75 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 444 2-Hacid_dh_C PF02826.14 178 5.5e-05 16.2 0.1 1 2 0.00059 0.057 6.4 0.0 38 75 2 38 1 58 0.81 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 444 2-Hacid_dh_C PF02826.14 178 5.5e-05 16.2 0.1 2 2 0.00027 0.026 7.5 0.0 51 101 334 386 333 407 0.77 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_17 - 102 2-Hacid_dh_C PF02826.14 178 0.00042 13.3 0.1 1 1 8.1e-06 0.00077 12.5 0.1 37 97 4 55 1 59 0.84 # 17538 # 17843 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 4_16 - 489 AAA_30 PF13604.1 196 5.1e-08 26.5 0.0 1 1 2.5e-09 4.8e-07 23.3 0.0 2 137 187 313 186 343 0.80 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_4 - 444 ApbA PF02558.11 151 3.7e-05 17.0 0.0 1 1 4.2e-07 8.1e-05 15.9 0.0 1 37 3 40 3 96 0.90 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_42 - 478 FtsK_SpoIIIE PF01580.13 205 2.9e-05 17.4 0.0 1 1 3.1e-07 6e-05 16.4 0.0 32 58 229 255 208 260 0.77 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 3_32 - 364 MTS PF05175.9 170 8.7e-08 25.5 0.0 1 1 8.5e-10 1.6e-07 24.6 0.0 24 140 23 143 8 165 0.74 # 29432 # 30523 # 1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 4_5 - 215 DNA_mis_repair PF01119.14 119 0.00037 13.8 0.0 1 2 1.6e-05 0.0031 10.8 0.0 62 101 54 93 19 105 0.81 # 5338 # 5982 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.375 4_5 - 215 DNA_mis_repair PF01119.14 119 0.00037 13.8 0.0 2 2 0.023 4.4 0.7 0.0 11 38 178 210 172 214 0.69 # 5338 # 5982 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.375 3_32 - 364 Cons_hypoth95 PF03602.10 183 0.00073 12.8 0.0 1 1 7.9e-06 0.0015 11.7 0.0 99 146 85 129 63 140 0.72 # 29432 # 30523 # 1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_4 - 444 UDPG_MGDP_dh_N PF03721.9 185 3.2e-64 209.5 1.9 1 1 2.8e-66 5.4e-64 208.8 1.9 1 185 1 184 1 184 0.97 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_42 - 478 AAA_19 PF13245.1 76 0.0007 13.2 0.0 1 1 2e-05 0.0019 11.8 0.0 5 49 230 272 226 277 0.78 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 4_16 - 489 AAA_19 PF13245.1 76 0.00077 13.1 0.0 1 1 1.7e-05 0.0016 12.0 0.0 10 27 203 220 196 237 0.79 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_22 - 700 AAA_10 PF12846.2 304 8.5e-50 163.6 0.1 1 1 1.5e-51 1.4e-49 162.9 0.1 1 302 279 638 279 640 0.90 # 25215 # 27314 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_61 - 1110 AAA_10 PF12846.2 304 9.1e-11 35.5 0.1 1 2 1.6e-11 1.5e-09 31.5 0.0 3 267 220 578 218 599 0.69 # 61524 # 64853 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_61 - 1110 AAA_10 PF12846.2 304 9.1e-11 35.5 0.1 2 2 0.032 3.1 0.9 0.0 249 285 818 854 815 867 0.80 # 61524 # 64853 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_4 - 444 DAO PF01266.19 358 0.0025 10.5 0.4 1 1 2.5e-05 0.0048 9.6 0.4 2 29 3 30 2 34 0.92 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_34 - 878 ResIII PF04851.10 184 1.9e-05 18.4 0.8 1 2 0.0096 0.92 3.1 0.0 4 122 278 394 275 422 0.71 # 30790 # 33423 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.367 3_34 - 878 ResIII PF04851.10 184 1.9e-05 18.4 0.8 2 2 2.1e-05 0.002 11.8 0.0 137 164 527 572 457 595 0.66 # 30790 # 33423 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.367 1_42 - 478 ResIII PF04851.10 184 0.00011 15.8 0.0 1 1 3.1e-06 0.0003 14.5 0.0 22 64 226 279 196 308 0.78 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 3_32 - 364 Methyltransf_31 PF13847.1 152 5.8e-05 16.5 0.0 1 1 5.3e-07 0.0001 15.8 0.0 7 109 36 142 30 181 0.74 # 29432 # 30523 # 1 # ID=3_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 4_16 - 489 Zot PF05707.7 193 0.00028 14.2 0.0 1 1 4.8e-06 0.00091 12.5 0.0 3 97 206 287 204 307 0.82 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_9 - 709 DUF3584 PF12128.3 1201 0.095 3.7 78.0 1 3 0.0036 0.7 0.9 37.3 236 534 262 483 240 486 0.40 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_9 - 709 DUF3584 PF12128.3 1201 0.095 3.7 78.0 2 3 8.1e-05 0.016 6.3 44.4 240 498 370 624 368 630 0.77 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_9 - 709 DUF3584 PF12128.3 1201 0.095 3.7 78.0 3 3 0.00026 0.05 4.6 3.0 293 349 633 689 622 706 0.76 # 7886 # 10012 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 4_16 - 489 Viral_helicase1 PF01443.13 234 5e-07 23.2 0.0 1 1 5e-09 9.6e-07 22.3 0.0 1 232 206 469 206 471 0.69 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 4_16 - 489 DUF2075 PF09848.4 352 1.4e-12 41.0 1.6 1 2 2.3e-12 4.4e-10 32.8 0.5 2 207 204 378 203 390 0.76 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 4_16 - 489 DUF2075 PF09848.4 352 1.4e-12 41.0 1.6 2 2 0.00023 0.043 6.5 0.0 279 322 416 458 400 479 0.78 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_61 - 1110 DEAD PF00270.24 169 0.00019 14.8 0.1 1 1 9.2e-06 0.00088 12.6 0.0 18 69 222 298 204 348 0.76 # 61524 # 64853 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_42 - 478 DEAD PF00270.24 169 0.00097 12.5 0.0 1 1 3.5e-05 0.0033 10.7 0.0 13 56 234 277 222 282 0.79 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_4 - 444 Pyr_redox PF00070.22 80 4.4e-05 17.7 0.2 1 1 1.2e-06 0.00024 15.4 0.0 2 67 3 72 2 81 0.71 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_61 - 1110 TrwB_AAD_bind PF10412.4 386 2.2e-10 33.5 0.6 1 2 0.054 5.2 -0.7 0.1 9 32 212 235 206 242 0.77 # 61524 # 64853 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_61 - 1110 TrwB_AAD_bind PF10412.4 386 2.2e-10 33.5 0.6 2 2 2.6e-11 2.5e-09 30.0 0.0 169 383 465 678 449 680 0.74 # 61524 # 64853 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_42 - 478 TrwB_AAD_bind PF10412.4 386 3.3e-05 16.4 0.1 1 2 0.081 7.8 -1.3 0.0 220 272 154 211 143 228 0.66 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_42 - 478 TrwB_AAD_bind PF10412.4 386 3.3e-05 16.4 0.1 2 2 1.7e-06 0.00017 14.1 0.0 14 50 234 272 222 295 0.79 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 4_16 - 489 AAA_11 PF13086.1 236 0.00062 13.2 0.1 1 1 4.2e-06 0.0008 12.8 0.1 6 44 191 238 187 468 0.83 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_42 - 478 Sigma54_activ_2 PF14532.1 138 2.2e-05 18.4 0.0 1 1 2.8e-07 5.4e-05 17.1 0.0 3 44 217 258 215 277 0.87 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_42 - 478 RNA_helicase PF00910.17 107 0.0001 16.3 0.0 1 1 1.6e-06 0.00032 14.7 0.0 1 31 238 265 238 287 0.77 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_4 - 444 TrkA_N PF02254.13 116 3.3e-05 17.7 0.8 1 2 1.5e-05 0.0029 11.4 0.1 1 38 3 40 3 48 0.91 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 1_4 - 444 TrkA_N PF02254.13 116 3.3e-05 17.7 0.8 2 2 0.0041 0.79 3.6 0.1 13 61 334 380 331 407 0.79 # 1915 # 3246 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_4 - 328 S1 PF00575.18 74 2.8e-05 18.0 5.6 1 3 0.022 4.3 1.4 0.0 20 46 82 119 77 137 0.71 # 2280 # 3263 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 3_4 - 328 S1 PF00575.18 74 2.8e-05 18.0 5.6 2 3 5.9e-06 0.0011 12.9 0.6 5 68 156 218 152 221 0.91 # 2280 # 3263 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 3_4 - 328 S1 PF00575.18 74 2.8e-05 18.0 5.6 3 3 0.0031 0.59 4.2 0.4 6 27 244 266 240 269 0.88 # 2280 # 3263 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 4_16 - 489 AAA_25 PF13481.1 194 0.00021 14.6 0.0 1 1 5.2e-06 0.0005 13.3 0.0 29 58 202 228 186 318 0.78 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_42 - 478 AAA_25 PF13481.1 194 0.00037 13.8 0.0 1 1 8.4e-06 0.00081 12.6 0.0 36 77 238 279 206 281 0.84 # 41397 # 42830 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 4_16 - 489 AAA_5 PF07728.9 139 0.00031 14.3 0.0 1 1 5.4e-06 0.001 12.6 0.0 3 94 207 298 206 340 0.72 # 10903 # 12369 # 1 # ID=4_16;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_43 - 273 APS_kinase PF01583.15 157 0.00014 15.4 0.0 1 1 1.4e-06 0.00026 14.5 0.0 10 57 14 61 6 71 0.88 # 42847 # 43665 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d0c5b297-2ad3-46f0-97d4-b532036614e4 # Target file: checkm_output/bins/pCP001747.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP001747.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d0c5b297-2ad3-46f0-97d4-b532036614e4 checkm_output/bins/pCP001747.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:55 2020 # [ok]