# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_110 - 234 SSB PF00436.20 104 3.6e-09 29.6 0.0 1 1 1.3e-10 7.4e-09 28.6 0.0 3 100 46 140 44 144 0.86 # 135546 # 136247 # -1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.358 1_91 - 1164 SSB PF00436.20 104 8.9e-05 15.5 0.7 1 2 0.01 0.59 3.2 0.1 64 99 1081 1117 1072 1122 0.85 # 115205 # 118696 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_91 - 1164 SSB PF00436.20 104 8.9e-05 15.5 0.7 2 2 1.7e-05 0.00099 12.1 0.5 19 85 1103 1156 1090 1161 0.80 # 115205 # 118696 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_103 - 346 TylF PF05711.6 249 0.00013 14.2 2.7 1 2 0.004 0.46 2.5 0.1 123 161 209 246 181 253 0.78 # 130743 # 131780 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.270 1_103 - 346 TylF PF05711.6 249 0.00013 14.2 2.7 2 2 5.5e-06 0.00064 11.9 0.5 129 174 265 310 235 324 0.72 # 130743 # 131780 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.270 1_2 - 469 Helicase_C PF00271.26 78 5.1e-15 48.3 0.4 1 1 2e-16 2.2e-14 46.2 0.1 10 78 328 397 324 397 0.95 # 2102 # 3508 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_106 - 173 AAA_23 PF13476.1 202 0.00015 15.2 4.1 1 1 1.5e-06 0.00018 15.0 4.1 129 201 71 140 3 152 0.64 # 133560 # 134078 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.341 1_73 - 136 AAA_13 PF13166.1 712 2.5e-05 15.9 3.1 1 1 2.8e-07 3.2e-05 15.6 3.1 410 467 19 76 5 118 0.56 # 103148 # 103555 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_80 - 361 KaiC PF06745.8 227 0.00027 13.2 0.0 1 1 5.9e-06 0.00068 11.9 0.0 2 153 74 247 73 257 0.83 # 107060 # 108142 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_23 - 351 GHMP_kinases_N PF00288.21 67 0.00038 13.7 0.1 1 1 1.5e-05 0.0017 11.6 0.0 16 55 243 283 242 289 0.89 # 25032 # 26084 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.297 1_80 - 361 DnaB_C PF03796.10 259 1.7e-19 62.8 0.0 1 1 1.9e-21 2.2e-19 62.4 0.0 1 240 72 327 72 345 0.79 # 107060 # 108142 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_106 - 173 AAA_27 PF13514.1 1111 6.2e-05 13.9 2.7 1 1 6.6e-07 7.5e-05 13.6 2.7 209 279 87 154 71 159 0.74 # 133560 # 134078 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.341 1_97 - 346 DUF633 PF04816.7 205 0.00084 11.8 2.9 1 1 3.4e-06 0.00039 12.9 0.5 123 200 137 219 133 224 0.89 # 122758 # 123795 # 1 # ID=1_97;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.354 1_91 - 1164 tRNA_anti-codon PF01336.20 75 0.00012 15.1 0.1 1 1 2.3e-06 0.00026 14.0 0.1 3 58 1091 1150 1089 1155 0.93 # 115205 # 118696 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_80 - 361 AAA_25 PF13481.1 194 4.6e-16 51.9 0.0 1 1 6.4e-18 7.3e-16 51.2 0.0 13 193 71 262 62 263 0.80 # 107060 # 108142 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_2 - 469 SNF2_N PF00176.18 299 5.8e-25 80.7 0.0 1 1 6.9e-27 7.9e-25 80.3 0.0 71 270 3 214 1 260 0.79 # 2102 # 3508 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/656fa614-9907-4433-ab0b-21048ac98764 # Target file: checkm_output/bins/pCP001188.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP001188.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/656fa614-9907-4433-ab0b-21048ac98764 checkm_output/bins/pCP001188.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:50 2020 # [ok]