# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 908 DUF87 PF01935.12 229 3e-06 19.2 0.0 1 1 5.5e-07 1.5e-05 16.9 0.0 20 228 374 620 354 621 0.73 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 1_13 - 853 DUF87 PF01935.12 229 4e-06 18.8 0.6 1 1 6.2e-07 1.7e-05 16.8 0.0 30 63 495 527 491 620 0.95 # 12256 # 14814 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.395 1_8 - 908 AAA_22 PF13401.1 131 8.1e-06 18.1 0.2 1 2 1.7e-06 9.1e-05 14.7 0.1 4 35 377 407 376 526 0.82 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 1_8 - 908 AAA_22 PF13401.1 131 8.1e-06 18.1 0.2 2 2 0.056 3 0.0 0.0 88 108 626 653 593 670 0.66 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 1_8 - 908 AAA_17 PF13207.1 121 0.00013 14.9 0.0 1 1 9.3e-06 0.0005 12.9 0.0 4 22 382 400 381 477 0.65 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 1_8 - 908 AAA_18 PF13238.1 129 1.7e-05 17.2 0.1 1 1 1.4e-06 7.5e-05 15.1 0.0 2 42 381 440 381 480 0.74 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 1_8 - 908 AAA_29 PF13555.1 62 0.00036 12.1 0.0 1 1 1.4e-05 0.00078 11.1 0.0 26 39 380 393 366 397 0.85 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 1_13 - 853 DUF258 PF03193.11 161 0.00011 13.4 0.0 1 1 4.7e-06 0.00025 12.3 0.0 11 56 464 509 457 530 0.83 # 12256 # 14814 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.395 1_8 - 908 FtsK_SpoIIIE PF01580.13 205 0.00043 11.8 0.0 1 1 1.9e-05 0.001 10.6 0.0 39 63 375 402 342 411 0.80 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 1_13 - 853 AAA_10 PF12846.2 304 1.4e-39 128.3 0.0 1 1 1.7e-40 3.1e-39 127.1 0.0 3 303 490 796 488 797 0.87 # 12256 # 14814 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.395 1_8 - 908 AAA_10 PF12846.2 304 8.4e-12 37.1 0.0 1 1 8.6e-13 1.6e-11 36.2 0.0 3 299 379 707 377 710 0.69 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 1_43 - 853 AAA_10 PF12846.2 304 2.3e-07 22.5 0.1 1 1 2.8e-08 5e-07 21.4 0.1 4 269 463 754 460 768 0.77 # 33478 # 36036 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_8 - 908 ResIII PF04851.10 184 0.00018 13.4 0.0 1 1 1.5e-05 0.00083 11.2 0.0 7 155 363 526 357 545 0.75 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 1_13 - 853 TrwB_AAD_bind PF10412.4 386 1.7e-06 18.8 0.0 1 1 1.3e-07 3.4e-06 17.8 0.0 11 55 484 528 478 531 0.92 # 12256 # 14814 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.395 1_8 - 908 TrwB_AAD_bind PF10412.4 386 3.7e-05 14.4 0.0 1 2 2.5e-05 0.00067 10.3 0.0 7 40 369 402 365 407 0.88 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 1_8 - 908 TrwB_AAD_bind PF10412.4 386 3.7e-05 14.4 0.0 2 2 0.012 0.34 1.4 0.0 248 287 638 677 570 703 0.79 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 1_8 - 908 AAA_25 PF13481.1 194 3.3e-05 15.4 0.0 1 1 1.8e-06 9.5e-05 13.9 0.0 36 140 380 482 365 487 0.66 # 6405 # 9128 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.397 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5b03a7b1-0d68-4640-9683-e184443207dd # Target file: checkm_output/bins/pCP001180.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP001180.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5b03a7b1-0d68-4640-9683-e184443207dd checkm_output/bins/pCP001180.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:47 2020 # [ok]