# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_95 - 628 DUF87 PF01935.12 229 3.9e-08 26.3 0.2 1 2 0.094 9.5 -1.2 0.3 121 153 94 124 12 172 0.60 # 67527 # 69410 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.307 1_95 - 628 DUF87 PF01935.12 229 3.9e-08 26.3 0.2 2 2 3.9e-10 3.9e-08 26.3 0.2 14 86 242 327 230 476 0.60 # 67527 # 69410 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.307 1_15 - 430 AAA_17 PF13207.1 121 0.00082 13.1 0.3 1 1 8.5e-05 0.0086 9.9 0.0 8 78 158 252 151 412 0.71 # 18707 # 19996 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_18 - 482 T2SE PF00437.15 272 2e-23 75.5 0.1 1 3 0.052 5.2 -1.3 0.4 7 73 13 78 8 88 0.81 # 21942 # 23387 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_18 - 482 T2SE PF00437.15 272 2e-23 75.5 0.1 2 3 2e-25 2e-23 75.5 0.1 25 261 144 382 137 387 0.87 # 21942 # 23387 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_18 - 482 T2SE PF00437.15 272 2e-23 75.5 0.1 3 3 0.078 7.9 -1.9 0.0 14 60 406 454 401 463 0.80 # 21942 # 23387 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_15 - 430 AAA_18 PF13238.1 129 0.00013 15.2 0.1 1 1 1.2e-05 0.0012 12.1 0.0 7 92 158 253 157 268 0.64 # 18707 # 19996 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_15 - 430 CbiA PF01656.18 195 2.8e-05 16.5 0.0 1 1 1.2e-06 0.00012 14.4 0.0 1 131 151 300 151 327 0.58 # 18707 # 19996 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_18 - 482 AAA_14 PF13173.1 128 1.3e-05 18.1 0.2 1 1 7.2e-07 7.2e-05 15.6 0.0 5 73 250 330 247 345 0.71 # 21942 # 23387 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_18 - 482 AAA_29 PF13555.1 62 0.00063 12.2 0.0 1 1 2.4e-05 0.0012 11.3 0.0 25 41 249 265 236 276 0.84 # 21942 # 23387 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_95 - 628 AAA_29 PF13555.1 62 0.00089 11.8 0.0 1 1 4.6e-05 0.0023 10.4 0.0 26 40 254 268 245 272 0.84 # 67527 # 69410 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.307 1_18 - 482 MMR_HSR1 PF01926.18 116 0.00084 12.2 0.4 1 1 2.4e-05 0.0024 10.8 0.0 2 58 250 331 249 409 0.54 # 21942 # 23387 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_11 - 561 TraG-D_C PF12696.2 128 7e-40 128.8 0.2 1 2 0.096 9.7 -1.0 0.0 63 83 93 114 87 153 0.75 # 12235 # 13917 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 1_11 - 561 TraG-D_C PF12696.2 128 7e-40 128.8 0.2 2 2 3.8e-41 3.8e-39 126.4 0.1 3 127 213 337 211 338 0.92 # 12235 # 13917 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 1_17 - 379 AAA_31 PF13614.1 157 2.9e-28 91.7 0.2 1 1 1.1e-29 5.4e-28 90.8 0.2 1 157 116 269 116 269 0.97 # 20783 # 21919 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.288 1_15 - 430 AAA_31 PF13614.1 157 6.4e-12 38.6 0.1 1 2 0.064 3.2 0.6 0.0 17 98 3 74 1 111 0.70 # 18707 # 19996 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_15 - 430 AAA_31 PF13614.1 157 6.4e-12 38.6 0.1 2 2 1.4e-12 7.1e-11 35.2 0.0 2 154 150 299 149 301 0.88 # 18707 # 19996 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_18 - 482 FtsK_SpoIIIE PF01580.13 205 3.1e-05 16.4 0.0 1 1 1.6e-06 8e-05 15.1 0.0 27 61 228 270 214 275 0.73 # 21942 # 23387 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_9 - 198 FtsK_SpoIIIE PF01580.13 205 0.00045 12.6 0.0 1 1 1.3e-05 0.00068 12.0 0.0 9 82 122 194 117 197 0.75 # 8977 # 9570 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_52 - 97 AAA_35 PF14516.1 331 8.7e-05 14.1 0.4 1 1 9.1e-07 9.2e-05 14.0 0.4 208 291 2 85 1 93 0.87 # 42085 # 42375 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_95 - 628 AAA_10 PF12846.2 304 1.5e-45 148.8 0.3 1 1 2.3e-47 2.3e-45 148.2 0.3 1 299 251 567 251 570 0.90 # 67527 # 69410 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.307 1_11 - 561 TrwB_AAD_bind PF10412.4 386 2.2e-35 114.9 0.0 1 1 1.1e-36 3.8e-35 114.1 0.0 75 380 26 351 22 354 0.86 # 12235 # 13917 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 1_95 - 628 TrwB_AAD_bind PF10412.4 386 2.3e-05 16.0 0.6 1 1 2.3e-06 7.8e-05 14.3 0.0 14 61 250 297 236 317 0.81 # 67527 # 69410 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 198 TrwB_AAD_bind PF10412.4 386 0.00018 13.1 0.0 1 1 7.4e-06 0.00025 12.6 0.0 12 56 152 195 142 197 0.85 # 8977 # 9570 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_11 - 561 T4SS-DNA_transf PF02534.9 469 1e-68 224.9 7.5 1 2 2e-70 1e-68 224.9 7.5 83 450 2 363 1 411 0.87 # 12235 # 13917 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 1_11 - 561 T4SS-DNA_transf PF02534.9 469 1e-68 224.9 7.5 2 2 0.08 4 -1.3 0.4 167 203 499 538 455 554 0.66 # 12235 # 13917 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 1_9 - 198 T4SS-DNA_transf PF02534.9 469 2e-08 26.1 0.1 1 1 5.3e-10 2.7e-08 25.7 0.1 44 80 155 192 116 196 0.73 # 8977 # 9570 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_18 - 482 GTP_EFTU PF00009.22 188 4.3e-05 15.9 2.5 1 1 4.4e-07 4.4e-05 15.9 0.0 3 26 247 270 245 289 0.88 # 21942 # 23387 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/41daff15-8974-4fd3-90d8-1e788093f5ff # Target file: checkm_output/bins/pCP001170.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP001170.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/41daff15-8974-4fd3-90d8-1e788093f5ff checkm_output/bins/pCP001170.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:46 2020 # [ok]