# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 218 Mg_chelatase PF01078.16 207 3.1e-05 13.1 0.0 1 1 4e-06 4.8e-05 12.5 0.0 26 60 35 69 8 81 0.83 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_6 - 489 Seryl_tRNA_N PF02403.17 108 0.021 4.8 37.8 1 3 0.089 1.1 -0.7 3.3 42 94 54 112 50 127 0.54 # 3607 # 5073 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_6 - 489 Seryl_tRNA_N PF02403.17 108 0.021 4.8 37.8 2 3 0.0015 0.018 5.0 12.9 24 108 230 318 213 318 0.87 # 3607 # 5073 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_6 - 489 Seryl_tRNA_N PF02403.17 108 0.021 4.8 37.8 3 3 3.4e-05 0.00041 10.3 4.8 21 97 376 449 363 458 0.82 # 3607 # 5073 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_8 - 218 AAA_22 PF13401.1 131 6.7e-05 13.0 0.9 1 2 0.0027 0.032 4.3 0.1 10 23 37 50 28 56 0.85 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_8 - 218 AAA_22 PF13401.1 131 6.7e-05 13.0 0.9 2 2 0.00032 0.0038 7.3 0.1 56 125 114 190 90 195 0.72 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_8 - 218 AAA_21 PF13304.1 303 8.1e-16 48.6 0.8 1 2 4.1e-05 0.0005 9.9 0.1 6 44 38 78 33 97 0.68 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_8 - 218 AAA_21 PF13304.1 303 8.1e-16 48.6 0.8 2 2 1.5e-13 1.8e-12 37.6 0.1 184 303 104 196 87 196 0.70 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_3 - 193 MobB PF03205.9 140 7e-05 12.5 0.0 1 1 1e-05 0.00012 11.7 0.0 18 59 49 91 47 131 0.73 # 1454 # 2032 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.349 1_8 - 218 SMC_N PF02463.14 220 2.4e-08 23.4 2.5 1 2 3.4e-05 0.0004 9.5 0.2 17 45 23 52 4 60 0.66 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_8 - 218 SMC_N PF02463.14 220 2.4e-08 23.4 2.5 2 2 1.4e-06 1.6e-05 14.1 0.1 156 204 148 197 103 208 0.79 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_8 - 218 AAA_23 PF13476.1 202 4.1e-07 20.4 6.3 1 1 6.8e-08 8.1e-07 19.4 6.3 11 88 22 123 6 207 0.48 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_6 - 489 AAA_13 PF13166.1 712 0.044 2.0 42.7 1 3 0.00072 0.0086 4.3 2.7 138 192 42 96 9 136 0.54 # 3607 # 5073 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_6 - 489 AAA_13 PF13166.1 712 0.044 2.0 42.7 2 3 0.0042 0.05 1.8 19.3 289 410 189 309 175 366 0.59 # 3607 # 5073 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_6 - 489 AAA_13 PF13166.1 712 0.044 2.0 42.7 3 3 0.003 0.036 2.3 12.5 329 471 298 438 295 481 0.45 # 3607 # 5073 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_8 - 218 AAA_29 PF13555.1 62 3.4e-05 13.3 0.0 1 1 5.2e-06 6.3e-05 12.5 0.0 17 51 26 59 20 67 0.84 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_8 - 218 ABC_tran PF00005.22 137 1.9e-32 102.4 0.1 1 1 3.9e-33 4.7e-32 101.1 0.0 1 137 21 161 21 161 0.97 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_8 - 218 SbcCD_C PF13558.1 90 0.0001 12.2 0.0 1 1 1.4e-05 0.00017 11.5 0.0 60 84 147 171 126 177 0.76 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_1 - 51 EF_TS PF00889.14 221 2e-05 13.9 0.2 1 1 1.7e-06 2e-05 13.9 0.2 70 103 7 40 2 50 0.86 # 110 # 262 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.190 1_8 - 218 PIF1 PF05970.9 364 7.2e-08 21.5 0.4 1 2 2.2e-08 2.6e-07 19.7 0.2 5 54 16 63 13 66 0.89 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_8 - 218 PIF1 PF05970.9 364 7.2e-08 21.5 0.4 2 2 0.033 0.39 -0.6 0.0 85 111 132 159 119 194 0.65 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_8 - 218 NACHT PF05729.7 166 8.9e-05 12.1 0.1 1 1 1.8e-05 0.00022 10.8 0.1 6 22 37 53 33 60 0.88 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_8 - 218 AAA_25 PF13481.1 194 0.00014 11.2 0.0 1 2 0.00042 0.005 6.1 0.0 31 60 29 60 4 72 0.77 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 1_8 - 218 AAA_25 PF13481.1 194 0.00014 11.2 0.0 2 2 0.0035 0.042 3.1 0.0 133 157 143 165 108 185 0.76 # 6262 # 6915 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.275 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/464484c9-e397-4182-9e5b-4170e88cfb92 # Target file: checkm_output/bins/pCP001168.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP001168.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/464484c9-e397-4182-9e5b-4170e88cfb92 checkm_output/bins/pCP001168.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:44 2020 # [ok]