# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_15 - 374 UPF0020 PF01170.13 180 6.4e-06 19.9 0.0 1 1 8.9e-08 2.1e-05 18.3 0.0 32 155 46 159 31 177 0.77 # 13479 # 14600 # -1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_101 - 274 MipZ PF09140.6 261 0.00055 13.1 0.0 1 1 5.3e-06 0.0012 12.0 0.0 11 135 16 135 6 166 0.69 # 118932 # 119753 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.365 1_174 - 127 KH_5 PF13184.1 69 4.3e-05 17.4 0.8 1 1 3.3e-07 7.7e-05 16.6 0.8 19 67 61 109 55 112 0.88 # 184490 # 184870 # -1 # ID=1_174;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_233 - 259 DEAD_2 PF06733.10 174 0.00045 13.7 0.9 1 1 2.6e-06 0.00062 13.3 0.9 56 145 128 220 91 240 0.83 # 256424 # 257200 # -1 # ID=1_233;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_102 - 475 AAA_2 PF07724.9 171 4.7e-05 17.5 0.1 1 2 0.078 18 -0.7 0.0 4 44 184 224 183 231 0.79 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 AAA_2 PF07724.9 171 4.7e-05 17.5 0.1 2 2 1.8e-06 0.00042 14.4 0.0 2 43 234 274 233 283 0.91 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 DUF87 PF01935.12 229 0.00057 13.8 0.2 1 1 9.7e-06 0.0023 11.9 0.0 25 56 237 267 228 272 0.82 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_204 - 271 AAA_22 PF13401.1 131 3.6e-28 92.4 0.3 1 1 1.1e-29 8.4e-28 91.2 0.1 2 131 25 170 24 170 0.91 # 211369 # 212181 # 1 # ID=1_204;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_102 - 475 AAA_22 PF13401.1 131 4.3e-05 17.8 0.0 1 1 1.8e-06 0.00014 16.1 0.0 6 68 237 316 229 371 0.78 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_20 - 292 AAA_22 PF13401.1 131 0.00041 14.6 0.0 1 1 1.8e-05 0.0014 12.8 0.0 10 99 33 158 25 190 0.67 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 292 SRP54 PF00448.17 196 0.00045 13.8 0.0 1 1 5.2e-06 0.0012 12.4 0.0 4 47 30 71 27 79 0.87 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 292 AAA_15 PF13175.1 415 3.1e-06 20.5 0.1 1 3 0.017 4 0.4 0.0 28 43 33 51 20 92 0.80 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 292 AAA_15 PF13175.1 415 3.1e-06 20.5 0.1 2 3 1.3e-08 3.1e-06 20.5 0.1 336 411 122 186 109 188 0.79 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 292 AAA_15 PF13175.1 415 3.1e-06 20.5 0.1 3 3 0.066 15 -1.5 3.7 200 283 193 267 186 291 0.47 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_102 - 475 AAA_17 PF13207.1 121 1.3e-05 20.2 0.3 1 1 4.3e-07 5e-05 18.2 0.0 2 46 238 295 237 399 0.65 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_145 - 324 AAA_17 PF13207.1 121 0.0032 12.4 1.1 1 1 9.6e-05 0.011 10.6 0.1 2 17 282 297 281 311 0.89 # 153969 # 154940 # 1 # ID=1_145;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.380 1_20 - 292 AAA_21 PF13304.1 303 1.3e-15 52.1 4.9 1 2 5.7e-05 0.013 9.5 0.3 3 17 31 45 29 64 0.80 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 292 AAA_21 PF13304.1 303 1.3e-15 52.1 4.9 2 2 9.6e-16 2.2e-13 44.8 0.1 193 297 106 185 50 189 0.74 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_101 - 274 MobB PF03205.9 140 0.00031 14.6 0.0 1 1 8.5e-06 0.00067 13.5 0.0 8 38 14 44 7 106 0.85 # 118932 # 119753 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.365 1_20 - 292 MobB PF03205.9 140 0.00055 13.8 1.2 1 1 3e-05 0.0023 11.7 0.0 2 25 29 52 28 133 0.92 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_102 - 475 MobB PF03205.9 140 0.0016 12.3 0.2 1 1 0.00013 0.0099 9.7 0.0 3 32 238 267 236 272 0.89 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_11 - 561 Helicase_C PF00271.26 78 5e-05 17.3 0.0 1 1 4.5e-07 0.00011 16.2 0.0 16 78 285 347 270 347 0.86 # 7242 # 8924 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.379 1_101 - 274 ArsA_ATPase PF02374.10 305 8.5e-05 15.8 0.1 1 1 6.5e-07 0.00015 14.9 0.1 12 38 17 43 10 199 0.76 # 118932 # 119753 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 MCM PF00493.18 331 0.00015 14.7 0.0 1 1 1.4e-06 0.00033 13.6 0.0 54 85 232 263 218 269 0.88 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 T2SE PF00437.15 272 9e-45 146.7 0.0 1 1 6.5e-47 1.5e-44 146.0 0.0 4 268 110 386 107 390 0.90 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_91 - 500 AAA_26 PF13500.1 199 0.00081 13.1 0.0 1 1 2e-05 0.0023 11.6 0.0 1 34 226 259 226 343 0.86 # 107763 # 109262 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_101 - 274 AAA_26 PF13500.1 199 0.0014 12.4 0.1 1 1 1.9e-05 0.0022 11.7 0.1 7 194 12 226 6 231 0.66 # 118932 # 119753 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 Zeta_toxin PF06414.7 201 0.00011 15.4 0.9 1 2 0.00093 0.22 4.7 0.1 64 133 27 95 9 96 0.82 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 Zeta_toxin PF06414.7 201 0.00011 15.4 0.9 2 2 6.4e-05 0.015 8.5 0.0 14 42 233 262 221 279 0.80 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_20 - 292 SMC_N PF02463.14 220 0.0028 11.0 2.3 1 2 0.00051 0.12 5.7 0.2 29 41 32 44 13 56 0.76 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 292 SMC_N PF02463.14 220 0.0028 11.0 2.3 2 2 0.00083 0.19 5.0 0.1 130 197 121 184 106 207 0.71 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_55 - 311 TIGR02432 TIGR02432 189 0.00054 13.7 0.0 1 1 4.4e-06 0.001 12.8 0.0 3 27 23 47 21 103 0.73 # 71816 # 72748 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.387 1_101 - 274 Fer4_NifH PF00142.13 273 0.00095 12.5 0.0 1 1 6e-06 0.0014 11.9 0.0 2 63 7 70 6 84 0.76 # 118932 # 119753 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.365 1_20 - 292 AAA_16 PF13191.1 185 2.8e-05 18.3 0.1 1 2 2e-05 0.0023 12.0 0.0 22 58 25 62 6 78 0.83 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 292 AAA_16 PF13191.1 185 2.8e-05 18.3 0.1 2 2 0.005 0.58 4.2 0.0 34 88 175 231 173 270 0.63 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_102 - 475 AAA_16 PF13191.1 185 0.0014 12.8 0.0 1 1 2.5e-05 0.0029 11.7 0.0 19 52 230 271 218 359 0.71 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_20 - 292 AAA_23 PF13476.1 202 0.007 10.8 12.2 1 1 0.00032 0.076 7.4 12.2 12 199 19 263 9 283 0.44 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_102 - 475 AAA_18 PF13238.1 129 1.8e-05 19.2 0.1 1 1 3.8e-07 9e-05 16.9 0.0 1 35 238 276 238 331 0.75 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_22 - 3375 adh_short PF00106.20 167 1.9e-33 109.8 0.0 1 1 4.6e-35 5.3e-33 108.4 0.0 2 165 908 1077 907 1079 0.92 # 29023 # 39147 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_21 - 2682 adh_short PF00106.20 167 7.3e-30 98.2 0.0 1 1 1.4e-31 1.6e-29 97.1 0.0 1 166 967 1144 967 1145 0.94 # 20964 # 29009 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_101 - 274 CbiA PF01656.18 195 3.9e-10 33.5 0.1 1 1 3.1e-12 7.3e-10 32.6 0.1 1 161 8 204 8 227 0.70 # 118932 # 119753 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.365 1_15 - 374 Methyltransf_25 PF13649.1 101 4.3e-06 21.2 0.1 1 1 6.7e-08 1.6e-05 19.4 0.0 3 73 48 113 46 163 0.82 # 13479 # 14600 # -1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_20 - 292 AAA_29 PF13555.1 62 3.8e-05 17.3 0.1 1 1 3e-07 7.1e-05 16.4 0.1 15 40 20 44 13 59 0.85 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_204 - 271 AAA PF00004.24 132 5.2e-05 17.6 0.7 1 1 1.8e-06 0.00021 15.6 0.7 3 98 32 156 31 191 0.62 # 211369 # 212181 # 1 # ID=1_204;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_20 - 292 AAA PF00004.24 132 0.013 9.8 4.3 1 2 0.00024 0.029 8.7 0.5 3 66 32 153 30 157 0.65 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 292 AAA PF00004.24 132 0.013 9.8 4.3 2 2 0.096 11 0.3 0.2 9 36 176 207 170 268 0.59 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_85 - 436 PGK PF00162.14 384 0.00017 14.3 0.1 1 1 1.4e-06 0.00033 13.3 0.1 98 156 170 225 154 237 0.80 # 99627 # 100934 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.344 1_22 - 3375 KR PF08659.5 181 1.4e-41 136.3 0.1 1 1 7e-43 8.2e-41 133.7 0.0 1 180 907 1091 907 1092 0.93 # 29023 # 39147 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_21 - 2682 KR PF08659.5 181 1.8e-36 119.6 0.0 1 1 3e-38 3.5e-36 118.6 0.0 1 180 967 1158 967 1159 0.91 # 20964 # 29009 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_55 - 311 PAPS_reduct PF01507.14 174 1.1e-08 29.2 0.0 1 1 1.6e-10 3.8e-08 27.4 0.0 3 153 23 220 21 266 0.78 # 71816 # 72748 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.387 1_102 - 475 Sigma54_activat PF00158.21 168 2.1e-06 21.4 0.0 1 1 2.3e-08 5.4e-06 20.1 0.0 3 55 216 268 214 279 0.89 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_15 - 374 N6_Mtase PF02384.11 311 9e-07 22.3 0.5 1 2 6.3e-08 1.5e-05 18.3 0.0 26 148 20 130 14 162 0.74 # 13479 # 14600 # -1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_15 - 374 N6_Mtase PF02384.11 311 9e-07 22.3 0.5 2 2 0.012 2.8 1.0 0.1 224 276 190 244 176 269 0.76 # 13479 # 14600 # -1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 DUF258 PF03193.11 161 0.00054 13.3 0.0 1 1 9.7e-06 0.0011 12.2 0.0 5 59 204 259 200 321 0.86 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_20 - 292 DUF258 PF03193.11 161 0.00069 12.9 0.0 1 1 1.3e-05 0.0016 11.8 0.0 19 57 10 49 2 65 0.83 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_82 - 1167 TraG-D_C PF12696.2 128 6.9e-13 42.7 2.1 1 1 3.3e-15 7.6e-13 42.6 0.0 3 125 539 659 538 661 0.85 # 93808 # 97308 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.342 1_101 - 274 AAA_31 PF13614.1 157 2.2e-21 70.6 0.1 1 1 2.8e-23 3.2e-21 70.0 0.1 1 152 6 171 6 174 0.91 # 118932 # 119753 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.365 1_91 - 500 AAA_31 PF13614.1 157 2.7e-06 21.5 0.1 1 1 5.1e-08 5.9e-06 20.4 0.1 1 152 226 381 226 386 0.79 # 107763 # 109262 # 1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_15 - 374 Methyltransf_26 PF13659.1 117 3.2e-15 50.3 0.0 1 1 3.3e-17 7.7e-15 49.1 0.0 4 116 46 154 44 155 0.88 # 13479 # 14600 # -1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_153 - 102 2-Hacid_dh_C PF02826.14 178 0.00042 13.6 0.1 1 1 3.1e-06 0.00073 12.8 0.1 37 97 4 55 1 60 0.85 # 166093 # 166398 # 1 # ID=1_153;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_204 - 271 AAA_30 PF13604.1 196 3.8e-05 17.4 0.0 1 1 2.8e-07 6.5e-05 16.7 0.0 22 128 31 162 19 165 0.76 # 211369 # 212181 # 1 # ID=1_204;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_102 - 475 FtsK_SpoIIIE PF01580.13 205 4.7e-05 17.0 0.0 1 1 4e-07 9.4e-05 16.0 0.0 33 58 230 255 207 263 0.77 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_15 - 374 MTS PF05175.9 170 7.8e-10 32.5 0.0 1 1 5.6e-12 1.3e-09 31.7 0.0 23 141 32 154 17 177 0.77 # 13479 # 14600 # -1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_168 - 171 dNK PF01712.14 146 0.063 7.3 8.3 1 1 8.1e-05 0.019 9.0 5.1 73 136 101 169 96 170 0.67 # 179759 # 180271 # 1 # ID=1_168;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_20 - 292 ABC_tran PF00005.22 137 2.5e-29 96.4 0.0 1 2 5.2e-30 6.1e-28 91.9 0.0 3 136 19 155 17 156 0.93 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_20 - 292 ABC_tran PF00005.22 137 2.5e-29 96.4 0.0 2 2 0.022 2.6 2.5 0.1 22 79 176 239 170 278 0.54 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_145 - 324 ABC_tran PF00005.22 137 0.0069 10.8 3.1 1 1 8.9e-05 0.01 10.2 0.0 13 30 281 298 277 312 0.82 # 153969 # 154940 # 1 # ID=1_145;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.380 1_227 - 215 DNA_mis_repair PF01119.14 119 0.0012 12.4 0.0 1 2 3e-05 0.0071 9.9 0.0 78 101 71 93 47 105 0.79 # 248259 # 248903 # -1 # ID=1_227;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.372 1_227 - 215 DNA_mis_repair PF01119.14 119 0.0012 12.4 0.0 2 2 0.05 12 -0.5 0.0 7 36 174 208 169 213 0.74 # 248259 # 248903 # -1 # ID=1_227;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.372 1_15 - 374 Cons_hypoth95 PF03602.10 183 0.0017 11.9 0.0 1 1 1.4e-05 0.0034 10.9 0.0 94 141 90 134 36 147 0.76 # 13479 # 14600 # -1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_21 - 2682 NAD_binding_4 PF07993.7 249 2e-06 21.0 0.1 1 1 2.4e-07 2.8e-05 17.2 0.1 1 143 971 1123 971 1148 0.80 # 20964 # 29009 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_22 - 3375 NAD_binding_4 PF07993.7 249 0.0011 12.0 0.2 1 1 2.2e-05 0.0026 10.8 0.2 1 98 911 1003 911 1010 0.78 # 29023 # 39147 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_102 - 475 AAA_19 PF13245.1 76 0.00053 13.9 0.0 1 1 7.9e-06 0.0019 12.1 0.0 6 48 231 268 227 273 0.73 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_24 - 252 Nol1_Nop2_Fmu_2 PF13636.1 102 0.001 13.3 0.0 1 2 0.0045 1.1 3.6 0.0 52 86 76 112 61 119 0.75 # 40146 # 40901 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_24 - 252 Nol1_Nop2_Fmu_2 PF13636.1 102 0.001 13.3 0.0 2 2 0.00032 0.075 7.3 0.0 29 62 199 233 191 234 0.86 # 40146 # 40901 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_148 - 323 AAA_10 PF12846.2 304 8.8e-33 108.1 0.0 1 1 1.5e-34 1.1e-32 107.7 0.0 78 302 11 261 4 263 0.90 # 157779 # 158747 # 1 # ID=1_148;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.364 1_82 - 1167 AAA_10 PF12846.2 304 1.7e-10 34.8 0.1 1 1 6.2e-12 4.8e-10 33.4 0.1 3 267 220 578 218 600 0.68 # 93808 # 97308 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.342 1_145 - 324 AAA_10 PF12846.2 304 2.4e-07 24.5 0.5 1 1 5.8e-09 4.5e-07 23.6 0.0 1 39 279 318 279 322 0.95 # 153969 # 154940 # 1 # ID=1_145;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.380 1_21 - 2682 3Beta_HSD PF01073.14 280 0.00022 14.1 0.0 1 1 2.3e-06 0.00055 12.8 0.0 1 68 970 1043 970 1125 0.72 # 20964 # 29009 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_59 - 283 ThiF PF00899.16 136 2.4e-15 50.6 0.0 1 1 1.9e-17 4.3e-15 49.8 0.0 4 116 16 148 15 164 0.78 # 74072 # 74920 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_102 - 475 ResIII PF04851.10 184 1.7e-06 22.1 0.0 1 1 3.7e-08 4.3e-06 20.8 0.0 13 64 222 276 194 305 0.80 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_13 - 560 ResIII PF04851.10 184 0.00017 15.5 0.8 1 2 0.0033 0.38 4.6 0.0 4 70 262 332 259 409 0.71 # 11485 # 13164 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.354 1_13 - 560 ResIII PF04851.10 184 0.00017 15.5 0.8 2 2 0.00025 0.029 8.3 0.1 137 157 511 549 421 553 0.71 # 11485 # 13164 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.354 1_15 - 374 Methyltransf_31 PF13847.1 152 4.2e-06 20.5 0.0 1 1 5.8e-08 6.8e-06 19.8 0.0 7 111 46 154 40 191 0.79 # 13479 # 14600 # -1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_168 - 171 Methyltransf_31 PF13847.1 152 0.0015 12.2 1.2 1 2 0.0035 0.41 4.3 0.0 56 82 43 66 32 120 0.73 # 179759 # 180271 # 1 # ID=1_168;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_168 - 171 Methyltransf_31 PF13847.1 152 0.0015 12.2 1.2 2 2 0.00058 0.068 6.9 0.5 28 67 124 163 112 169 0.82 # 179759 # 180271 # 1 # ID=1_168;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_204 - 271 DUF3584 PF12128.3 1201 0.00044 11.7 0.0 1 1 2.8e-06 0.00066 11.2 0.0 1152 1191 132 172 125 178 0.82 # 211369 # 212181 # 1 # ID=1_204;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_204 - 271 DUF2075 PF09848.4 352 0.00085 12.4 0.0 1 1 5.1e-06 0.0012 11.9 0.0 5 126 31 162 27 164 0.68 # 211369 # 212181 # 1 # ID=1_204;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_21 - 2682 Epimerase PF01370.16 236 6.5e-07 23.1 0.2 1 2 0.095 11 -0.6 0.0 43 108 799 864 775 881 0.74 # 20964 # 29009 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_21 - 2682 Epimerase PF01370.16 236 6.5e-07 23.1 0.2 2 2 6e-08 7.1e-06 19.7 0.0 2 166 970 1152 969 1172 0.69 # 20964 # 29009 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_22 - 3375 Epimerase PF01370.16 236 0.00062 13.3 0.1 1 1 1.2e-05 0.0014 12.2 0.1 2 117 910 1048 909 1079 0.81 # 29023 # 39147 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.373 1_82 - 1167 DEAD PF00270.24 169 6.1e-05 16.7 0.1 1 1 2.2e-06 0.00026 14.6 0.0 16 70 220 299 204 348 0.77 # 93808 # 97308 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.342 1_102 - 475 DEAD PF00270.24 169 0.0015 12.2 0.0 1 1 4.2e-05 0.0049 10.5 0.0 13 55 234 273 222 279 0.73 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 DUF853 PF05872.7 504 0.00034 13.1 0.0 1 1 2.7e-06 0.00064 12.2 0.0 23 46 237 260 214 270 0.78 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_82 - 1167 TrwB_AAD_bind PF10412.4 386 1.9e-10 34.0 0.5 1 2 0.016 1.8 1.1 0.0 7 32 210 235 206 245 0.80 # 93808 # 97308 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.342 1_82 - 1167 TrwB_AAD_bind PF10412.4 386 1.9e-10 34.0 0.5 2 2 3.3e-11 3.9e-09 29.6 0.0 169 383 465 678 449 680 0.76 # 93808 # 97308 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.342 1_102 - 475 TrwB_AAD_bind PF10412.4 386 1.4e-06 21.2 0.4 1 2 0.047 5.5 -0.5 0.0 212 280 146 219 143 235 0.72 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 TrwB_AAD_bind PF10412.4 386 1.4e-06 21.2 0.4 2 2 1e-07 1.2e-05 18.1 0.0 14 51 234 271 226 291 0.88 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_89 - 379 AAA_11 PF13086.1 236 0.0077 9.9 5.7 1 1 4.5e-05 0.011 9.4 5.3 87 183 156 252 136 297 0.73 # 104944 # 106080 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.330 1_102 - 475 Sigma54_activ_2 PF14532.1 138 1.3e-06 22.6 0.0 1 1 1.5e-08 3.5e-06 21.2 0.0 2 50 216 264 215 277 0.86 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 RNA_helicase PF00910.17 107 0.00039 14.7 0.0 1 1 5e-06 0.0012 13.2 0.0 1 25 238 262 238 285 0.77 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 UPF0079 PF02367.12 123 0.00039 14.2 0.0 1 1 4e-06 0.00093 13.0 0.0 8 42 228 262 221 275 0.85 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_79 - 328 S1 PF00575.18 74 0.0002 15.6 3.9 1 3 0.047 11 0.4 0.0 20 40 82 102 77 129 0.82 # 88681 # 89664 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_79 - 328 S1 PF00575.18 74 0.0002 15.6 3.9 2 3 5.8e-05 0.014 9.7 0.4 5 68 156 218 152 221 0.89 # 88681 # 89664 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_79 - 328 S1 PF00575.18 74 0.0002 15.6 3.9 3 3 0.003 0.7 4.2 0.4 6 27 244 266 240 269 0.88 # 88681 # 89664 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_20 - 292 AAA_25 PF13481.1 194 0.00088 12.8 0.0 1 1 1.4e-05 0.0017 11.9 0.0 32 149 26 152 23 164 0.63 # 19923 # 20798 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_102 - 475 AAA_25 PF13481.1 194 0.001 12.6 0.0 1 1 1.8e-05 0.002 11.6 0.0 35 73 237 272 202 278 0.74 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_204 - 271 DUF1253 PF06862.7 442 5.8e-05 15.7 0.2 1 1 4.4e-07 0.0001 14.9 0.2 145 186 111 152 98 157 0.85 # 211369 # 212181 # 1 # ID=1_204;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_102 - 475 AAA_28 PF13521.1 163 0.00056 14.0 0.0 1 1 6.2e-06 0.0015 12.6 0.0 2 34 238 275 237 317 0.71 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_102 - 475 AAA_5 PF07728.9 139 0.00064 13.6 0.0 1 1 6.1e-06 0.0014 12.5 0.0 1 28 237 266 237 275 0.82 # 119769 # 121193 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_101 - 274 APS_kinase PF01583.15 157 0.00015 15.5 0.0 1 1 1.2e-06 0.00028 14.7 0.0 9 55 13 59 5 77 0.86 # 118932 # 119753 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.365 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c38d8de7-e287-41fb-9b0a-3577706311ee # Target file: checkm_output/bins/pCP001166.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP001166.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c38d8de7-e287-41fb-9b0a-3577706311ee checkm_output/bins/pCP001166.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:46 2020 # [ok]