# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_16 - 253 IstB_IS21 PF01695.12 178 2.3e-21 68.3 0.1 1 1 5.1e-23 3.4e-21 67.8 0.1 6 153 60 217 56 230 0.79 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_65 - 277 MipZ PF09140.6 261 5.4e-06 18.0 0.3 1 1 1.6e-05 0.0011 10.5 0.3 4 48 9 53 6 160 0.43 # 48890 # 49720 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_65 - 277 YhjQ PF06564.7 244 8.4e-08 24.2 0.0 1 1 1.8e-09 1.2e-07 23.6 0.0 9 150 13 160 6 197 0.80 # 48890 # 49720 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_56 - 389 DUF87 PF01935.12 229 5.7e-07 21.9 1.8 1 1 3.6e-08 2.5e-06 19.8 1.8 23 49 144 170 124 272 0.87 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_56 - 389 AAA_22 PF13401.1 131 7.8e-07 21.7 0.0 1 1 2.6e-08 1.7e-06 20.6 0.0 6 114 146 276 141 293 0.68 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_16 - 253 AAA_17 PF13207.1 121 2.8e-05 17.3 0.5 1 1 1.1e-06 7.4e-05 16.0 0.1 5 109 107 240 104 250 0.51 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_65 - 277 ArsA_ATPase PF02374.10 305 4.4e-07 21.5 1.1 1 2 1.9e-08 1.3e-06 20.0 0.2 8 137 13 138 6 140 0.67 # 48890 # 49720 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_65 - 277 ArsA_ATPase PF02374.10 305 4.4e-07 21.5 1.1 2 2 0.081 5.5 -1.8 0.0 258 279 196 217 152 238 0.60 # 48890 # 49720 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_16 - 253 PhoH PF02562.11 205 0.00035 12.2 0.1 1 1 1.3e-05 0.00091 10.8 0.1 19 42 101 124 84 137 0.80 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_46 - 787 AAA_7 PF12775.2 272 0.0049 8.3 3.8 1 2 0.00013 0.0092 7.4 1.1 184 266 451 533 437 536 0.80 # 28788 # 31148 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_46 - 787 AAA_7 PF12775.2 272 0.0049 8.3 3.8 2 2 0.0012 0.079 4.3 0.2 201 230 513 542 502 578 0.83 # 28788 # 31148 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_56 - 389 T2SE PF00437.15 272 0.0002 12.7 0.0 1 1 5e-06 0.00034 11.9 0.0 129 154 145 170 98 178 0.86 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_34 - 562 Terminase_1 PF03354.10 477 6.3e-100 327.1 0.1 1 1 1.2e-101 8e-100 326.7 0.1 2 468 82 546 81 553 0.96 # 19706 # 21391 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_56 - 389 Zeta_toxin PF06414.7 201 4.1e-05 15.1 0.0 1 1 2e-06 6.9e-05 14.4 0.0 19 94 147 223 133 227 0.80 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_16 - 253 Zeta_toxin PF06414.7 201 4.2e-05 15.0 0.0 1 1 2.1e-06 7e-05 14.3 0.0 20 43 105 128 87 171 0.87 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_65 - 277 Fer4_NifH PF00142.13 273 1.4e-05 16.7 0.2 1 2 6.3e-07 4.3e-05 15.1 0.0 8 60 14 67 7 104 0.81 # 48890 # 49720 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_65 - 277 Fer4_NifH PF00142.13 273 1.4e-05 16.7 0.2 2 2 0.063 4.3 -1.3 0.0 99 125 235 261 178 268 0.64 # 48890 # 49720 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_56 - 389 Arch_ATPase PF01637.13 234 4.6e-07 22.1 0.2 1 1 1.1e-08 7.5e-07 21.4 0.2 20 131 144 260 135 275 0.70 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_56 - 389 AAA_16 PF13191.1 185 8.3e-06 18.2 0.0 1 1 4.2e-07 1.4e-05 17.5 0.0 22 52 142 175 134 277 0.81 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_16 - 253 AAA_16 PF13191.1 185 0.00046 12.5 0.0 1 1 2e-05 0.00069 12.0 0.0 28 82 105 169 100 234 0.75 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_56 - 389 AAA_23 PF13476.1 202 0.00027 13.6 0.0 1 1 7.9e-06 0.00054 12.7 0.0 22 68 147 199 137 361 0.64 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_45 - 488 AAA_13 PF13166.1 712 0.0011 9.7 11.9 1 1 3.4e-06 0.00023 12.0 6.7 337 464 25 148 9 157 0.51 # 27100 # 28563 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_65 - 277 CbiA PF01656.18 195 2.2e-32 104.4 0.4 1 1 4e-34 2.7e-32 104.1 0.4 2 193 9 228 8 230 0.81 # 48890 # 49720 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_56 - 389 AAA_29 PF13555.1 62 3.5e-05 15.7 0.0 1 1 1e-06 6.9e-05 14.8 0.0 20 40 141 161 131 173 0.81 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_16 - 253 AAA PF00004.24 132 5.6e-09 28.7 0.1 1 1 1.2e-10 8.4e-09 28.1 0.1 2 124 105 226 104 235 0.71 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_16 - 253 Bac_DnaA PF00308.13 219 1.3e-07 23.8 0.1 1 1 2.7e-09 1.8e-07 23.3 0.1 24 155 91 230 67 246 0.70 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_65 - 277 AAA_31 PF13614.1 157 4.5e-12 38.5 0.1 1 1 1.2e-13 8e-12 37.7 0.1 9 155 14 164 7 166 0.85 # 48890 # 49720 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_16 - 253 AAA_30 PF13604.1 196 0.0005 12.0 0.3 1 1 1.4e-05 0.00094 11.1 0.3 21 53 104 136 90 176 0.84 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_56 - 389 FtsK_SpoIIIE PF01580.13 205 8.5e-30 96.1 0.1 1 1 1.7e-31 1.2e-29 95.6 0.1 13 204 117 291 108 292 0.92 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_56 - 389 ABC_tran PF00005.22 137 0.00015 14.5 0.0 1 1 4.9e-06 0.00033 13.3 0.0 14 51 147 186 142 297 0.63 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_56 - 389 AAA_10 PF12846.2 304 3.1e-08 25.7 0.7 1 2 3.8e-05 0.0013 10.5 0.1 2 23 145 166 144 187 0.87 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_56 - 389 AAA_10 PF12846.2 304 3.1e-08 25.7 0.7 2 2 4.1e-06 0.00014 13.7 0.1 199 264 210 292 193 316 0.77 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_16 - 253 AAA_10 PF12846.2 304 0.00014 13.7 0.2 1 1 7.7e-06 0.00026 12.8 0.2 3 142 103 245 102 250 0.70 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_68 - 182 Methyltransf_7 PF03492.10 334 0.00013 13.1 0.4 1 1 2.7e-06 0.00018 12.6 0.4 221 271 40 96 30 113 0.70 # 52242 # 52787 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 1_16 - 253 ResIII PF04851.10 184 9.2e-05 14.7 5.1 1 2 0.04 1.4 1.1 2.6 64 108 40 84 28 100 0.66 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_16 - 253 ResIII PF04851.10 184 9.2e-05 14.7 5.1 2 2 5.3e-06 0.00018 13.7 0.0 29 76 105 150 93 174 0.77 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_56 - 389 ResIII PF04851.10 184 0.00033 12.9 0.0 1 1 1.6e-05 0.00056 12.1 0.0 22 96 129 228 104 284 0.68 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_56 - 389 Viral_helicase1 PF01443.13 234 0.00035 12.5 0.1 1 2 3e-05 0.0021 9.9 0.1 2 66 148 211 147 252 0.89 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_56 - 389 Viral_helicase1 PF01443.13 234 0.00035 12.5 0.1 2 2 0.026 1.8 0.3 0.0 62 75 228 241 209 265 0.62 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_16 - 253 TIP49 PF06068.8 398 0.00014 13.0 0.0 1 1 2.9e-06 0.0002 12.5 0.0 53 89 104 141 74 166 0.78 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_56 - 389 DUF815 PF05673.8 250 1.9e-05 16.0 0.7 1 2 0.099 6.7 -2.2 0.0 106 133 89 118 82 120 0.78 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_56 - 389 DUF815 PF05673.8 250 1.9e-05 16.0 0.7 2 2 6.7e-07 4.5e-05 14.8 0.0 52 82 143 179 129 209 0.76 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_16 - 253 DUF853 PF05872.7 504 4.6e-05 14.2 0.5 1 1 9.4e-07 6.4e-05 13.7 0.2 14 58 91 138 76 157 0.78 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_56 - 389 TrwB_AAD_bind PF10412.4 386 1.3e-05 16.3 0.0 1 2 1.1e-05 0.00075 10.5 0.0 12 40 141 169 135 174 0.87 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_56 - 389 TrwB_AAD_bind PF10412.4 386 1.3e-05 16.3 0.0 2 2 0.0015 0.1 3.4 0.0 239 281 243 289 231 292 0.79 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_58 - 197 AAA_11 PF13086.1 236 0.011 7.6 8.5 1 1 0.00024 0.016 7.1 8.5 72 166 71 160 53 190 0.62 # 44712 # 45302 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.438 1_65 - 277 ParA PF10609.4 81 9.9e-05 14.6 0.7 1 2 0.058 3.9 -0.1 0.0 50 65 73 88 57 100 0.77 # 48890 # 49720 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_65 - 277 ParA PF10609.4 81 9.9e-05 14.6 0.7 2 2 9.1e-06 0.00062 12.1 0.0 2 63 129 194 128 208 0.77 # 48890 # 49720 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_56 - 389 Pox_A32 PF04665.7 241 2.5e-05 16.0 0.1 1 1 7.8e-07 5.3e-05 14.9 0.1 15 89 146 224 134 305 0.83 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_56 - 389 Gtr1_RagA PF04670.7 232 0.00017 13.1 0.0 1 1 4.7e-06 0.00032 12.2 0.0 2 26 147 171 146 230 0.83 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_16 - 253 RNA_helicase PF00910.17 107 6.3e-05 15.5 0.1 1 1 1.1e-05 0.00037 13.0 0.0 3 62 106 178 104 197 0.75 # 9983 # 10741 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.395 1_56 - 389 RNA_helicase PF00910.17 107 9.7e-05 14.9 0.0 1 1 7.3e-06 0.00025 13.6 0.0 2 44 148 190 147 219 0.74 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 1_34 - 562 Terminase_GpA PF05876.7 557 3e-05 14.8 0.0 1 1 6.5e-07 4.4e-05 14.3 0.0 31 146 101 211 81 217 0.76 # 19706 # 21391 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_56 - 389 NACHT PF05729.7 166 0.00055 12.0 0.0 1 1 1.6e-05 0.0011 11.0 0.0 3 36 147 180 146 264 0.70 # 42861 # 44027 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.365 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2a256f5b-00c1-4c56-aa8b-fa805b569508 # Target file: checkm_output/bins/pCP000907.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP000907.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2a256f5b-00c1-4c56-aa8b-fa805b569508 checkm_output/bins/pCP000907.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:43 2020 # [ok]