# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 210 Thymidylate_kin PF02223.12 186 5.5e-07 21.8 0.0 1 2 6.7e-05 0.0057 8.7 0.0 1 22 4 25 4 42 0.89 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 Thymidylate_kin PF02223.12 186 5.5e-07 21.8 0.0 2 2 1.1e-05 0.00097 11.2 0.0 109 150 116 154 105 192 0.71 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 Rad17 PF03215.10 519 0.00022 12.6 0.0 1 1 3.6e-06 0.0003 12.2 0.0 47 77 1 31 1 44 0.88 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_41 - 255 IstB_IS21 PF01695.12 178 5e-08 25.2 0.0 1 2 0.0047 0.4 2.7 0.0 55 70 96 111 68 118 0.84 # 25979 # 26743 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_41 - 255 IstB_IS21 PF01695.12 178 5e-08 25.2 0.0 2 2 1.8e-08 1.5e-06 20.4 0.0 108 169 173 236 149 241 0.86 # 25979 # 26743 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_21 - 210 CoaE PF01121.15 180 0.0003 12.9 0.1 1 2 0.00024 0.021 6.9 0.2 5 26 4 26 1 96 0.80 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 CoaE PF01121.15 180 0.0003 12.9 0.1 2 2 0.0061 0.52 2.3 0.0 115 152 114 153 109 163 0.76 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 tRNA_lig_kinase PF08303.6 168 0.00017 14.1 0.1 1 2 2.3e-05 0.0019 10.7 0.0 6 21 6 21 1 40 0.85 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 tRNA_lig_kinase PF08303.6 168 0.00017 14.1 0.1 2 2 0.017 1.5 1.4 0.0 86 116 174 205 149 209 0.79 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 192 AAA_22 PF13401.1 131 1.9e-08 27.2 0.0 1 1 6.8e-10 2.9e-08 26.6 0.0 15 123 14 116 2 122 0.82 # 5321 # 5896 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_21 - 210 AAA_22 PF13401.1 131 0.0003 13.6 0.0 1 1 1.3e-05 0.00053 12.8 0.0 6 29 1 24 1 72 0.89 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_79 - 445 DNA_methylase PF00145.12 335 1.2e-70 230.9 0.0 1 2 5e-28 4.2e-26 84.4 0.0 1 83 9 90 9 93 0.97 # 60386 # 61720 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.442 1_79 - 445 DNA_methylase PF00145.12 335 1.2e-70 230.9 0.0 2 2 3.3e-46 2.8e-44 144.2 0.0 84 334 127 439 122 440 0.75 # 60386 # 61720 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.442 1_51 - 116 KAP_NTPase PF07693.9 325 0.00027 12.6 0.1 1 1 3.5e-06 0.0003 12.5 0.1 239 304 36 101 10 113 0.84 # 32640 # 32987 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 210 AAA_17 PF13207.1 121 1.7e-08 28.0 0.3 1 1 5.8e-10 4.9e-08 26.5 0.3 3 32 3 33 1 200 0.71 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_41 - 255 T2SE PF00437.15 272 0.00073 11.1 0.0 1 1 1.2e-05 0.0011 10.6 0.0 103 152 65 112 13 117 0.73 # 25979 # 26743 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_21 - 210 SKI PF01202.17 158 6.3e-06 18.8 0.0 1 2 1.9e-05 0.0016 11.0 0.0 2 21 9 28 8 77 0.92 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 SKI PF01202.17 158 6.3e-06 18.8 0.0 2 2 0.00071 0.06 5.9 0.0 86 113 125 151 101 201 0.77 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 Cytidylate_kin2 PF13189.1 179 3.6e-06 19.7 0.0 1 2 3.5e-06 0.00029 13.4 0.0 4 29 4 29 1 38 0.91 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 Cytidylate_kin2 PF13189.1 179 3.6e-06 19.7 0.0 2 2 0.0025 0.21 4.1 0.0 110 143 119 153 111 180 0.75 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_39 - 343 TIGR02432 TIGR02432 189 0.00042 12.6 0.0 1 1 1.1e-05 0.00094 11.5 0.0 2 27 26 51 25 73 0.80 # 24745 # 25773 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_21 - 210 AAA_18 PF13238.1 129 1.9e-10 33.9 0.0 1 1 1.7e-11 7.2e-10 32.0 0.0 3 116 4 148 2 161 0.79 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_9 - 193 AAA_18 PF13238.1 129 4.4e-09 29.4 1.6 1 1 1.4e-10 6.1e-09 29.0 1.3 1 115 10 138 10 156 0.70 # 3489 # 4067 # -1 # ID=1_9;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.437 1_41 - 255 CbiA PF01656.18 195 0.00052 12.1 0.0 1 1 9.9e-06 0.00084 11.4 0.0 3 23 92 112 90 126 0.87 # 25979 # 26743 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_21 - 210 AAA_14 PF13173.1 128 0.00012 14.7 0.0 1 1 4.8e-06 0.00041 12.9 0.0 5 27 2 23 1 70 0.73 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 AAA PF00004.24 132 5.2e-05 16.2 0.0 1 1 1.1e-06 9.4e-05 15.3 0.0 5 29 6 30 2 65 0.86 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 192 TK PF00265.13 176 7.8e-42 135.5 0.0 1 1 1e-43 8.8e-42 135.3 0.0 4 176 6 186 3 186 0.90 # 5321 # 5896 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_39 - 343 PAPS_reduct PF01507.14 174 7.3e-16 51.1 0.0 1 2 2e-09 1.7e-07 23.9 0.0 2 66 26 89 25 113 0.77 # 24745 # 25773 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_39 - 343 PAPS_reduct PF01507.14 174 7.3e-16 51.1 0.0 2 2 2e-09 1.7e-07 23.9 0.0 77 172 159 264 132 266 0.77 # 24745 # 25773 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_21 - 210 AAA_33 PF13671.1 143 5.7e-08 25.4 0.0 1 2 7.5e-06 0.00064 12.3 0.0 3 32 3 36 1 96 0.72 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 AAA_33 PF13671.1 143 5.7e-08 25.4 0.0 2 2 1.5e-05 0.0013 11.3 0.0 88 130 114 154 102 167 0.78 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_38 - 453 DnaB_C PF03796.10 259 3.1e-09 28.7 0.0 1 1 6.7e-11 5.7e-09 27.8 0.0 4 180 166 362 164 395 0.80 # 23375 # 24733 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_21 - 210 dNK PF01712.14 146 3.4e-35 113.8 0.0 1 1 5.2e-37 4.4e-35 113.4 0.0 1 143 54 198 54 201 0.91 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 ABC_tran PF00005.22 137 0.00017 14.6 0.0 1 1 4.1e-06 0.00035 13.6 0.0 15 37 3 25 1 98 0.75 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 RuvB_N PF05496.7 234 0.00079 11.2 0.0 1 1 1.7e-05 0.0014 10.3 0.0 54 78 3 27 1 38 0.86 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_21 - 210 AAA_19 PF13245.1 76 0.00032 13.2 0.0 1 1 6.7e-06 0.00057 12.3 0.0 13 31 2 19 1 34 0.87 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_11 - 256 DUF3584 PF12128.3 1201 0.00047 10.2 5.6 1 1 7.2e-06 0.00061 9.8 5.6 821 923 23 126 15 131 0.90 # 4318 # 5085 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.469 1_29 - 524 GTP_EFTU_D2 PF03144.20 74 0.00044 13.1 11.1 1 5 0.013 1.1 2.2 0.7 30 44 137 162 108 226 0.53 # 14761 # 16332 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_29 - 524 GTP_EFTU_D2 PF03144.20 74 0.00044 13.1 11.1 2 5 0.0031 0.26 4.2 0.2 14 39 217 239 215 249 0.63 # 14761 # 16332 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_29 - 524 GTP_EFTU_D2 PF03144.20 74 0.00044 13.1 11.1 3 5 0.017 1.4 1.8 0.0 12 43 290 318 290 331 0.72 # 14761 # 16332 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_29 - 524 GTP_EFTU_D2 PF03144.20 74 0.00044 13.1 11.1 4 5 0.0014 0.12 5.3 0.1 13 36 362 386 361 404 0.78 # 14761 # 16332 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_29 - 524 GTP_EFTU_D2 PF03144.20 74 0.00044 13.1 11.1 5 5 0.017 1.4 1.8 0.0 11 24 448 461 446 482 0.73 # 14761 # 16332 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_21 - 210 Viral_helicase1 PF01443.13 234 8.9e-05 14.7 0.0 1 1 1.5e-06 0.00013 14.2 0.0 1 21 2 21 2 48 0.81 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_29 - 524 EXOSC1 PF10447.4 82 0.013 8.2 9.4 1 3 0.00083 0.07 5.9 0.1 51 76 149 172 86 175 0.85 # 14761 # 16332 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_29 - 524 EXOSC1 PF10447.4 82 0.013 8.2 9.4 2 3 0.044 3.7 0.3 0.2 48 75 193 222 176 225 0.64 # 14761 # 16332 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_29 - 524 EXOSC1 PF10447.4 82 0.013 8.2 9.4 3 3 0.0013 0.11 5.2 0.1 56 76 292 312 269 314 0.89 # 14761 # 16332 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_21 - 210 NACHT PF05729.7 166 0.0009 11.6 0.0 1 1 2.1e-05 0.0018 10.6 0.0 3 22 2 21 1 29 0.85 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_38 - 453 AAA_25 PF13481.1 194 1.9e-08 26.6 0.0 1 1 1.3e-09 1.1e-07 24.1 0.0 24 188 173 360 158 366 0.74 # 23375 # 24733 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_21 - 210 AAA_28 PF13521.1 163 5.1e-08 25.7 0.0 1 1 7.7e-10 6.5e-08 25.4 0.0 3 98 3 97 1 184 0.78 # 9264 # 9893 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_64 - 392 TOBE_2 PF08402.5 75 0.00059 12.5 0.2 1 1 2.4e-05 0.0021 10.8 0.1 25 67 87 129 85 134 0.81 # 48370 # 49545 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.450 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fcc2beb1-35e5-4baa-8185-98fa5162124a # Target file: checkm_output/bins/pCP000906.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP000906.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fcc2beb1-35e5-4baa-8185-98fa5162124a checkm_output/bins/pCP000906.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:43 2020 # [ok]