# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_37 - 289 MipZ PF09140.6 261 2.6e-15 48.7 0.2 1 2 2.5e-12 2e-10 32.7 0.2 3 57 9 63 7 93 0.89 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 289 MipZ PF09140.6 261 2.6e-15 48.7 0.2 2 2 1.1e-06 8.3e-05 14.3 0.0 76 125 120 169 76 179 0.80 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 289 YhjQ PF06564.7 244 1.7e-08 26.6 0.0 1 1 1.4e-09 1.1e-07 24.0 0.0 10 149 15 174 8 179 0.70 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_71 - 430 3HCDH_N PF02737.13 180 2.4e-06 19.8 0.0 1 1 8.8e-08 6.8e-06 18.4 0.0 2 40 3 41 2 78 0.87 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 Pyr_redox_2 PF07992.9 201 7.7e-06 18.4 0.0 1 1 3.5e-07 2.8e-05 16.6 0.0 1 32 2 33 2 65 0.90 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_72 - 318 NmrA PF05368.8 233 2e-05 16.5 0.0 1 2 1.7e-05 0.0013 10.5 0.0 1 26 3 29 3 125 0.82 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_72 - 318 NmrA PF05368.8 233 2e-05 16.5 0.0 2 2 0.0015 0.12 4.1 0.0 164 229 201 265 184 299 0.85 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_37 - 289 ATP_bind_1 PF03029.12 238 1.2e-08 27.3 0.1 1 1 5.3e-10 4.2e-08 25.5 0.1 6 163 17 207 15 248 0.83 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_71 - 430 NAD_binding_7 PF13241.1 103 6.5e-08 25.4 0.0 1 2 6e-06 0.00047 13.0 0.0 10 70 3 84 1 151 0.60 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 NAD_binding_7 PF13241.1 103 6.5e-08 25.4 0.0 2 2 8.6e-05 0.0067 9.3 0.0 23 92 335 406 297 412 0.76 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_37 - 289 AAA_17 PF13207.1 121 2.9e-05 17.5 0.0 1 2 4.9e-06 0.00038 13.9 0.0 9 34 17 46 16 102 0.66 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 289 AAA_17 PF13207.1 121 2.9e-05 17.5 0.0 2 2 0.074 5.8 0.4 0.0 50 77 122 150 102 191 0.62 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 289 MobB PF03205.9 140 0.00016 13.9 0.3 1 1 4.9e-06 0.00038 12.7 0.3 9 46 16 51 8 53 0.88 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 289 ArsA_ATPase PF02374.10 305 1.6e-09 29.8 0.0 1 2 1.1e-08 8.5e-07 20.8 0.0 8 43 14 49 7 65 0.89 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 289 ArsA_ATPase PF02374.10 305 1.6e-09 29.8 0.0 2 2 0.0002 0.016 6.7 0.0 118 137 132 153 122 156 0.76 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_72 - 318 Methyltransf_24 PF13578.1 106 2.3e-05 17.8 0.0 1 1 6.8e-07 5.3e-05 16.6 0.0 7 74 9 79 5 80 0.85 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_71 - 430 NAD_binding_8 PF13450.1 68 0.00015 14.4 0.3 1 1 5.4e-06 0.00042 12.9 0.3 1 28 5 32 5 34 0.94 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 FAD_binding_3 PF01494.14 356 8.8e-07 20.7 0.1 1 1 1.9e-08 1.5e-06 20.0 0.1 3 38 2 37 1 43 0.91 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_37 - 289 Fer4_NifH PF00142.13 273 1.2e-08 26.9 0.0 1 1 3.2e-10 2.5e-08 25.9 0.0 7 49 14 56 9 86 0.86 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 289 AAA_16 PF13191.1 185 3.2e-05 16.5 0.0 1 1 1.1e-06 8.6e-05 15.1 0.0 34 131 17 123 15 149 0.63 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 289 AAA_18 PF13238.1 129 0.0008 12.3 0.8 1 1 2.9e-05 0.0023 10.8 0.1 8 40 17 54 15 159 0.63 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_72 - 318 adh_short PF00106.20 167 2.4e-09 29.9 0.0 1 1 5.2e-11 4.1e-09 29.1 0.0 3 136 3 127 2 137 0.84 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_49 - 188 AAA_13 PF13166.1 712 0.0032 8.4 26.0 1 2 3.1e-05 0.0024 8.8 12.8 370 461 47 137 27 142 0.85 # 42300 # 42863 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_49 - 188 AAA_13 PF13166.1 712 0.0032 8.4 26.0 2 2 0.00067 0.052 4.4 8.5 417 466 137 186 129 187 0.54 # 42300 # 42863 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_37 - 289 CbiA PF01656.18 195 1.3e-34 111.9 0.0 1 1 2e-36 1.6e-34 111.6 0.0 1 194 9 246 9 247 0.82 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_72 - 318 Polysacc_synt_2 PF02719.10 294 2.6e-17 55.1 0.0 1 1 1.1e-18 8.8e-17 53.4 0.0 1 253 3 267 3 276 0.79 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_28 - 94 DUF223 PF02721.9 95 0.00012 14.7 0.4 1 2 0.0001 0.0079 8.9 0.1 46 71 15 40 2 49 0.85 # 23033 # 23314 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_28 - 94 DUF223 PF02721.9 95 0.00012 14.7 0.4 2 2 0.0023 0.18 4.6 0.0 49 72 55 78 46 89 0.82 # 23033 # 23314 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_71 - 430 FAD_binding_2 PF00890.19 417 6.7e-06 17.6 0.1 1 1 1.8e-07 1.4e-05 16.6 0.2 1 33 2 34 2 40 0.93 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_72 - 318 KR PF08659.5 181 2.4e-06 19.8 0.0 1 1 1.1e-07 8.2e-06 18.1 0.0 3 142 3 131 2 138 0.79 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_71 - 430 NAD_binding_2 PF03446.10 163 1.5e-06 20.7 0.0 1 2 3.6e-07 2.8e-05 16.5 0.0 3 113 2 137 1 141 0.86 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 NAD_binding_2 PF03446.10 163 1.5e-06 20.7 0.0 2 2 0.018 1.4 1.3 0.0 18 96 336 410 333 427 0.74 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_37 - 289 AAA_31 PF13614.1 157 1.5e-12 40.2 0.1 1 2 7.8e-10 6.1e-08 25.3 0.0 3 98 9 102 8 114 0.72 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 289 AAA_31 PF13614.1 157 1.5e-12 40.2 0.1 2 2 5.5e-06 0.00043 12.8 0.0 104 134 129 159 115 193 0.78 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_71 - 430 NAD_Gly3P_dh_N PF01210.18 157 6.2e-12 38.1 0.2 1 2 1e-11 8e-10 31.2 0.0 2 134 3 149 2 158 0.70 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 NAD_Gly3P_dh_N PF01210.18 157 6.2e-12 38.1 0.2 2 2 0.0056 0.44 2.8 0.0 52 79 357 384 348 409 0.81 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 2-Hacid_dh_C PF02826.14 178 1.1e-05 17.2 0.0 1 2 2.4e-05 0.0019 9.9 0.0 39 89 3 55 1 60 0.80 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 2-Hacid_dh_C PF02826.14 178 1.1e-05 17.2 0.0 2 2 0.00087 0.068 4.8 0.0 54 120 337 401 328 407 0.76 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 ApbA PF02558.11 151 7.1e-10 31.1 0.0 1 1 3e-11 2.3e-09 29.4 0.0 1 80 3 87 3 98 0.89 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_72 - 318 NAD_binding_4 PF07993.7 249 4.7e-21 67.3 0.0 1 1 1.6e-21 1.3e-19 62.7 0.0 1 245 5 221 5 225 0.77 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_71 - 430 UDPG_MGDP_dh_N PF03721.9 185 3.5e-65 211.4 0.7 1 2 6.3e-66 5e-64 207.6 0.1 1 180 1 179 1 184 0.95 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 UDPG_MGDP_dh_N PF03721.9 185 3.5e-65 211.4 0.7 2 2 0.017 1.4 0.8 0.0 62 85 360 383 353 405 0.74 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_72 - 318 RmlD_sub_bind PF04321.12 287 1.1e-19 62.8 0.0 1 1 2.2e-21 1.8e-19 62.2 0.0 1 235 1 265 1 294 0.80 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_72 - 318 NAD_binding_10 PF13460.1 183 2.6e-12 39.6 0.0 1 1 1.2e-13 4.8e-12 38.8 0.0 1 150 3 183 3 203 0.77 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_71 - 430 NAD_binding_10 PF13460.1 183 0.00057 12.5 0.0 1 1 5.5e-05 0.0021 10.6 0.0 1 69 3 83 3 115 0.79 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_37 - 289 AAA_10 PF12846.2 304 9.5e-05 14.4 0.1 1 1 1.3e-06 0.0001 14.3 0.1 11 43 17 49 10 275 0.88 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_71 - 430 DAO PF01266.19 358 8.1e-07 20.7 0.6 1 1 1.6e-08 1.2e-06 20.1 0.6 1 32 2 33 2 37 0.96 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_72 - 318 3Beta_HSD PF01073.14 280 8e-22 69.7 0.0 1 1 1.5e-23 1.2e-21 69.2 0.0 1 229 4 229 4 246 0.81 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_72 - 318 Epimerase PF01370.16 236 2.9e-63 206.0 0.0 1 1 4.4e-65 3.4e-63 205.7 0.0 1 236 3 243 3 243 0.95 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_71 - 430 Pyr_redox PF00070.22 80 2.8e-06 20.3 0.3 1 1 1e-07 7.8e-06 18.9 0.1 2 29 3 30 2 36 0.92 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_72 - 318 DapB_N PF01113.15 124 7.8e-06 18.4 0.1 1 1 5.2e-07 4e-05 16.1 0.0 1 31 1 31 1 87 0.76 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_37 - 289 ArgK PF03308.11 267 1.5e-06 19.7 0.0 1 1 3.1e-08 2.4e-06 19.0 0.0 38 83 16 60 6 91 0.85 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_72 - 318 Ldh_1_N PF00056.18 141 1.1e-06 21.1 0.0 1 1 2.6e-08 2e-06 20.2 0.0 1 116 1 124 1 129 0.72 # 66312 # 67265 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_71 - 430 TrkA_N PF02254.13 116 1.6e-07 23.9 0.1 1 2 5.5e-07 4.3e-05 16.1 0.0 1 47 3 49 3 53 0.90 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 TrkA_N PF02254.13 116 1.6e-07 23.9 0.1 2 2 0.0025 0.2 4.3 0.0 48 93 361 405 349 424 0.79 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 AlaDh_PNT_C PF01262.16 168 4.6e-06 18.8 0.1 1 2 8.5e-07 6.6e-05 15.1 0.0 23 70 3 50 1 128 0.82 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_71 - 430 AlaDh_PNT_C PF01262.16 168 4.6e-06 18.8 0.1 2 2 0.027 2.1 0.4 0.0 91 137 363 406 354 407 0.80 # 65026 # 66315 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 1_37 - 289 AAA_25 PF13481.1 194 0.00015 13.8 0.1 1 1 1.1e-05 0.00086 11.3 0.1 37 73 11 49 5 151 0.78 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_37 - 289 AAA_5 PF07728.9 139 3.9e-06 19.2 0.0 1 1 8.1e-08 6.3e-06 18.5 0.0 9 67 17 79 15 125 0.85 # 29978 # 30844 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2f87454d-f497-41e3-9c3a-d421fc245c05 # Target file: checkm_output/bins/pCP000905.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP000905.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2f87454d-f497-41e3-9c3a-d421fc245c05 checkm_output/bins/pCP000905.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:42 2020 # [ok]