# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 229 Thymidylate_kin PF02223.12 186 3.2e-06 17.8 0.0 1 3 1.3e-06 3.6e-05 14.3 0.0 6 45 11 52 10 62 0.84 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 Thymidylate_kin PF02223.12 186 3.2e-06 17.8 0.0 2 3 0.037 1.1 -0.2 0.0 61 97 150 184 128 203 0.74 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 Thymidylate_kin PF02223.12 186 3.2e-06 17.8 0.0 3 3 0.03 0.86 0.1 0.1 122 169 175 225 155 227 0.59 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 MipZ PF09140.6 261 6.4e-18 55.8 0.6 1 3 1.3e-11 3.9e-10 30.3 0.0 2 51 2 50 1 57 0.85 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 MipZ PF09140.6 261 6.4e-18 55.8 0.6 2 3 7.7e-09 2.2e-07 21.3 0.0 82 140 63 121 46 130 0.86 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 MipZ PF09140.6 261 6.4e-18 55.8 0.6 3 3 0.008 0.23 1.6 0.0 128 177 132 181 126 203 0.82 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 YhjQ PF06564.7 244 8.8e-06 16.3 0.0 1 1 5.8e-07 1.7e-05 15.4 0.0 10 41 9 40 1 53 0.89 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_22 PF13401.1 131 1.3e-05 16.5 0.1 1 1 1.6e-06 4.7e-05 14.7 0.0 14 89 11 81 9 143 0.80 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 SRP54 PF00448.17 196 1.2e-09 29.1 0.0 1 1 7.6e-11 2.2e-09 28.2 0.0 11 99 11 95 2 145 0.79 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_17 PF13207.1 121 2.7e-05 16.2 0.1 1 1 2.4e-06 6.9e-05 14.9 0.1 9 32 11 39 10 211 0.86 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 MobB PF03205.9 140 0.00017 12.5 0.0 1 1 1.2e-05 0.00035 11.4 0.0 3 35 3 35 1 45 0.78 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 ArsA_ATPase PF02374.10 305 1.8e-10 31.4 0.3 1 2 1.6e-11 4.7e-10 30.1 0.2 5 108 5 109 1 131 0.66 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 ArsA_ATPase PF02374.10 305 1.8e-10 31.4 0.3 2 2 0.023 0.66 0.0 0.1 126 134 79 87 64 176 0.64 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 T2SE PF00437.15 272 4.8e-06 16.7 0.1 1 1 2.4e-07 6.9e-06 16.2 0.1 133 261 6 139 2 147 0.82 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 Zeta_toxin PF06414.7 201 1.9e-05 14.9 0.0 1 1 1.3e-06 3.8e-05 14.0 0.0 25 113 10 99 5 193 0.75 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 VirC1 PF07015.6 231 3.7e-10 30.4 0.0 1 1 2.9e-11 8.5e-10 29.2 0.0 4 127 3 126 1 195 0.69 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 Fer4_NifH PF00142.13 273 6.6e-07 19.9 0.0 1 1 5.1e-08 1.5e-06 18.7 0.0 7 42 8 43 2 94 0.81 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_16 PF13191.1 185 8.6e-05 13.7 0.0 1 1 4.9e-06 0.00014 13.0 0.0 34 77 11 61 9 148 0.76 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_18 PF13238.1 129 2.9e-07 22.0 0.3 1 2 5.1e-08 1.5e-06 19.7 0.1 8 122 11 169 9 176 0.74 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_18 PF13238.1 129 2.9e-07 22.0 0.3 2 2 0.018 0.52 1.8 0.2 14 36 151 181 126 227 0.60 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 CbiA PF01656.18 195 7.5e-26 81.8 0.2 1 1 6.2e-27 1.8e-25 80.6 0.2 1 171 3 156 3 189 0.74 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_31 PF13614.1 157 3.1e-13 41.1 0.2 1 2 1.1e-12 3.1e-11 34.6 0.0 2 124 2 120 1 120 0.84 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_31 PF13614.1 157 3.1e-13 41.1 0.2 2 2 0.063 1.8 -0.4 0.1 36 63 143 184 125 225 0.48 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_33 PF13671.1 143 0.00012 13.2 0.0 1 1 8.8e-06 0.00025 12.1 0.0 9 87 11 97 9 103 0.67 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_19 PF13245.1 76 1e-05 16.4 0.0 1 1 1.2e-06 3.6e-05 14.7 0.0 20 48 11 35 3 49 0.86 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_10 PF12846.2 304 5.7e-05 13.8 0.0 1 1 4.4e-06 0.00013 12.6 0.0 11 114 11 127 9 226 0.53 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 DUF2075 PF09848.4 352 2.9e-05 14.3 0.1 1 1 1.7e-06 5e-05 13.5 0.0 5 90 5 86 2 135 0.83 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 NAD_binding_5 PF07994.7 295 0.00018 12.1 0.0 1 1 8.7e-06 0.00025 11.7 0.0 127 194 151 217 111 226 0.86 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_24 PF13479.1 213 7.4e-06 16.8 0.0 1 1 4.9e-07 1.4e-05 15.9 0.0 11 79 9 90 4 102 0.73 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 AAA_25 PF13481.1 194 3.1e-05 14.6 0.0 1 1 3.6e-06 0.0001 12.9 0.0 42 67 10 37 4 49 0.78 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 1_2 - 229 APS_kinase PF01583.15 157 2.2e-05 15.3 0.0 1 1 2.9e-06 8.5e-05 13.4 0.0 11 42 10 41 2 53 0.90 # 1567 # 2253 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/604a8f22-9199-40b9-a157-af362f0d8ce2 # Target file: checkm_output/bins/pCP000793.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP000793.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/604a8f22-9199-40b9-a157-af362f0d8ce2 checkm_output/bins/pCP000793.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:40 2020 # [ok]