# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 210 AAA_22 PF13401.1 131 3.2e-05 14.0 0.5 1 2 0.0001 0.0012 8.9 0.1 5 30 2 27 1 35 0.83 # 5386 # 6015 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_10 - 210 AAA_22 PF13401.1 131 3.2e-05 14.0 0.5 2 2 0.012 0.14 2.2 0.0 75 107 44 79 32 102 0.69 # 5386 # 6015 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_10 - 210 AAA_14 PF13173.1 128 3.8e-06 16.8 0.0 1 1 9.6e-07 1.1e-05 15.2 0.0 5 83 4 80 2 102 0.82 # 5386 # 6015 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_10 - 210 AAA PF00004.24 132 6.4e-07 19.6 0.0 1 1 1.1e-07 1.3e-06 18.6 0.0 3 112 6 105 4 119 0.68 # 5386 # 6015 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_10 - 210 AAA_10 PF12846.2 304 8e-05 12.0 0.0 1 2 0.001 0.013 4.8 0.0 4 21 4 21 2 34 0.81 # 5386 # 6015 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_10 - 210 AAA_10 PF12846.2 304 8e-05 12.0 0.0 2 2 0.00084 0.01 5.1 0.0 218 267 56 109 45 116 0.85 # 5386 # 6015 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_10 - 210 Zot PF05707.7 193 3.4e-10 29.6 0.0 1 2 0.00086 0.01 5.2 0.0 2 35 3 36 2 43 0.66 # 5386 # 6015 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_10 - 210 Zot PF05707.7 193 3.4e-10 29.6 0.0 2 2 3.6e-09 4.3e-08 22.7 0.0 66 146 47 125 27 162 0.77 # 5386 # 6015 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/630c25ac-356a-4343-8eae-47a1e3881492 # Target file: checkm_output/bins/pCP000765.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP000765.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/630c25ac-356a-4343-8eae-47a1e3881492 checkm_output/bins/pCP000765.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:38 2020 # [ok]