# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 1570 UPF0020 PF01170.13 180 2.1e-06 17.2 0.0 1 2 0.00012 0.0014 8.0 0.0 28 44 896 912 891 960 0.91 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_4 - 1570 UPF0020 PF01170.13 180 2.1e-06 17.2 0.0 2 2 0.00076 0.0084 5.5 0.0 96 139 1000 1046 977 1060 0.71 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_10 - 359 DUF87 PF01935.12 229 2.8e-07 20.3 0.2 1 1 6.2e-08 6.8e-07 19.1 0.0 15 60 133 174 128 178 0.87 # 12192 # 13268 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.363 1_10 - 359 AAA_22 PF13401.1 131 6e-08 22.7 0.0 1 1 1.1e-08 1.2e-07 21.7 0.0 6 124 141 280 137 287 0.69 # 12192 # 13268 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.363 1_10 - 359 AAA_17 PF13207.1 121 6.8e-05 13.5 0.0 1 1 1.3e-05 0.00014 12.5 0.0 2 100 142 245 141 282 0.57 # 12192 # 13268 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.363 1_4 - 1570 Helicase_C PF00271.26 78 5.4e-10 28.9 0.0 1 1 1.6e-10 1.8e-09 27.3 0.0 13 77 531 600 521 601 0.90 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_10 - 359 Zeta_toxin PF06414.7 201 0.00013 10.9 0.0 1 1 2.2e-05 0.00024 10.0 0.0 17 50 140 174 128 176 0.85 # 12192 # 13268 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.363 1_10 - 359 AAA_18 PF13238.1 129 9.4e-05 12.5 0.0 1 1 1.5e-05 0.00016 11.8 0.0 1 83 142 244 142 266 0.61 # 12192 # 13268 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.363 1_6 - 256 CbiA PF01656.18 195 8e-05 11.9 0.0 1 1 1.1e-05 0.00013 11.2 0.0 112 177 80 142 47 168 0.86 # 10149 # 10916 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.272 1_4 - 1570 N6_Mtase PF02384.11 311 7.1e-13 38.0 0.2 1 1 1.4e-13 1.5e-12 36.9 0.2 4 154 843 1040 840 1105 0.83 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_4 - 1570 Methyltransf_26 PF13659.1 117 5.8e-12 35.5 0.0 1 1 1.2e-12 1.4e-11 34.3 0.0 2 116 898 1086 897 1087 0.77 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_10 - 359 FtsK_SpoIIIE PF01580.13 205 8.2e-12 34.8 0.0 1 1 5.2e-11 5.7e-10 28.7 0.0 26 204 126 283 119 284 0.79 # 12192 # 13268 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.363 1_10 - 359 ABC_tran PF00005.22 137 2e-07 21.2 0.0 1 1 2.8e-08 3.1e-07 20.6 0.0 2 78 130 205 129 263 0.70 # 12192 # 13268 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.363 1_4 - 1570 Eco57I PF07669.6 106 5.1e-07 19.9 0.2 1 1 4.2e-07 4.6e-06 16.8 0.1 5 64 1014 1079 1010 1112 0.74 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_4 - 1570 AAA_19 PF13245.1 76 5.7e-06 15.9 0.0 1 1 1.2e-06 1.4e-05 14.7 0.0 18 50 204 235 197 248 0.92 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_10 - 359 AAA_10 PF12846.2 304 1.7e-07 20.6 0.0 1 2 1.1e-06 1.2e-05 14.6 0.0 3 54 141 192 140 209 0.85 # 12192 # 13268 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.363 1_10 - 359 AAA_10 PF12846.2 304 1.7e-07 20.6 0.0 2 2 0.0022 0.024 3.8 0.0 223 268 236 286 210 303 0.73 # 12192 # 13268 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.363 1_4 - 1570 ResIII PF04851.10 184 3.3e-24 75.5 1.6 1 1 6.6e-25 7.2e-24 74.4 0.3 2 183 176 378 175 379 0.69 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_4 - 1570 DEAD PF00270.24 169 1e-07 21.4 0.3 1 1 3.5e-07 3.8e-06 16.2 0.0 17 162 199 377 179 381 0.59 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_10 - 359 TrwB_AAD_bind PF10412.4 386 3.5e-05 12.3 0.0 1 1 4.7e-06 5.1e-05 11.7 0.0 14 77 138 200 129 212 0.83 # 12192 # 13268 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.363 1_4 - 1570 AAA_11 PF13086.1 236 3.6e-05 13.1 3.5 1 3 9.5e-06 0.0001 11.7 0.0 7 63 187 237 177 264 0.80 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_4 - 1570 AAA_11 PF13086.1 236 3.6e-05 13.1 3.5 2 3 0.066 0.73 -0.9 0.0 173 203 310 342 306 349 0.72 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_4 - 1570 AAA_11 PF13086.1 236 3.6e-05 13.1 3.5 3 3 0.082 0.9 -1.2 0.2 144 166 715 737 579 843 0.53 # 4270 # 8979 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.339 1_11 - 97 Guanylate_kin PF00625.16 183 8.6e-06 15.1 0.2 1 1 8.1e-07 8.9e-06 15.0 0.2 115 146 41 72 8 85 0.84 # 13579 # 13869 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.354 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a4fb1bb0-9487-440c-8653-74c5797ff9b9 # Target file: checkm_output/bins/pCP000430.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP000430.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a4fb1bb0-9487-440c-8653-74c5797ff9b9 checkm_output/bins/pCP000430.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:37 2020 # [ok]