# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_3 - 270 Methyltransf_32 PF13679.1 141 0.00014 13.4 0.0 1 2 0.0028 0.13 3.8 0.0 32 77 11 56 4 97 0.84 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_3 - 270 Methyltransf_32 PF13679.1 141 0.00014 13.4 0.0 2 2 0.00021 0.0097 7.4 0.0 23 50 169 195 158 228 0.79 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_23 - 339 cobW PF02492.14 178 0.00027 12.2 0.3 1 1 3.3e-05 0.0015 9.8 0.3 2 121 38 170 37 205 0.61 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 ABC_ATPase PF09818.4 448 3.5e-05 14.3 1.6 1 2 5.1e-05 0.0023 8.3 0.0 240 264 31 56 11 61 0.89 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 ABC_ATPase PF09818.4 448 3.5e-05 14.3 1.6 2 2 0.00082 0.038 4.3 0.4 322 413 156 232 141 257 0.68 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 IstB_IS21 PF01695.12 178 0.00021 12.6 0.0 1 1 1.1e-05 0.00051 11.3 0.0 44 67 33 56 23 61 0.90 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_3 - 270 MipZ PF09140.6 261 1.7e-12 38.7 0.0 1 1 5.8e-12 2.7e-10 31.5 0.0 3 132 4 155 2 177 0.66 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_3 - 270 YhjQ PF06564.7 244 2.4e-12 38.5 0.0 1 1 7.8e-14 3.6e-12 37.9 0.0 1 150 1 154 1 201 0.78 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 4_2 - 146 Usp PF00582.21 140 3.4e-25 80.7 0.0 1 1 8.6e-27 3.9e-25 80.5 0.0 2 140 7 145 6 145 0.97 # 2099 # 2536 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_23 - 339 NB-ARC PF00931.17 287 4.5e-05 14.2 0.1 1 1 5.3e-06 0.00012 12.7 0.0 20 40 37 57 24 69 0.86 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 NB-ARC PF00931.17 287 0.00029 11.5 0.0 1 1 2e-05 0.00045 10.9 0.0 19 44 41 66 31 138 0.88 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_23 - 339 AAA_22 PF13401.1 131 2.2e-08 26.2 0.8 1 1 2.8e-08 6.3e-07 21.4 0.8 4 123 36 214 33 220 0.71 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 AAA_22 PF13401.1 131 5.4e-05 15.2 1.7 1 1 6e-05 0.0014 10.6 1.7 9 123 46 212 39 221 0.60 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 2_3 - 270 ATP_bind_1 PF03029.12 238 1.6e-05 16.3 0.1 1 1 2.4e-06 0.00011 13.6 0.1 6 99 12 130 10 137 0.67 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_22 - 320 PRK PF00485.13 194 3.5e-05 15.2 0.2 1 1 1.9e-06 8.5e-05 14.0 0.0 2 81 44 124 43 140 0.80 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 2_3 - 270 SRP54 PF00448.17 196 6.9e-06 17.4 0.7 1 1 4.8e-07 2.2e-05 15.7 0.1 10 40 11 41 1 46 0.84 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_23 - 339 AAA_15 PF13175.1 415 1.4e-09 29.2 0.1 1 2 9.2e-05 0.0021 8.9 0.0 17 56 30 70 14 132 0.75 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 AAA_15 PF13175.1 415 1.4e-09 29.2 0.1 2 2 1.1e-07 2.4e-06 18.5 0.0 361 411 172 216 154 220 0.81 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 AAA_15 PF13175.1 415 4.4e-06 17.7 0.6 1 2 1.1e-05 0.00026 11.9 0.9 27 99 46 132 6 141 0.83 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_22 - 320 AAA_15 PF13175.1 415 4.4e-06 17.7 0.6 2 2 0.0046 0.11 3.3 0.0 370 410 173 213 162 218 0.81 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_23 - 339 AAA_17 PF13207.1 121 3.5e-05 16.4 0.1 1 1 4e-06 9.3e-05 15.1 0.1 1 20 38 57 38 82 0.90 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 AAA_17 PF13207.1 121 0.004 9.8 3.9 1 1 0.00067 0.015 7.9 3.9 2 19 44 61 43 300 0.79 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_23 - 339 AAA_21 PF13304.1 303 3.1e-16 51.9 0.1 1 2 7.2e-06 0.00016 13.4 0.0 2 25 39 64 38 89 0.76 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 AAA_21 PF13304.1 303 3.1e-16 51.9 0.1 2 2 6e-13 1.4e-11 36.6 0.0 227 300 147 218 88 221 0.84 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 AAA_21 PF13304.1 303 4e-13 41.7 2.8 1 1 1.9e-13 4.4e-12 38.3 0.9 3 299 45 215 44 219 0.95 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_23 - 339 Miro PF08477.8 119 1.2e-05 17.6 0.2 1 1 7.4e-07 3.4e-05 16.2 0.1 3 51 40 84 39 106 0.80 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 MobB PF03205.9 140 4.7e-05 14.9 0.0 1 1 2e-06 9.3e-05 14.0 0.0 2 48 38 83 37 124 0.72 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_3 - 270 ArsA_ATPase PF02374.10 305 6.1e-15 46.8 0.4 1 1 2.6e-16 1.2e-14 45.8 0.0 5 137 6 132 1 137 0.79 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_23 - 339 PhoH PF02562.11 205 1.1e-05 16.5 0.0 1 2 5.8e-06 0.00027 12.0 0.0 16 70 33 91 19 127 0.67 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 PhoH PF02562.11 205 1.1e-05 16.5 0.0 2 2 0.0058 0.26 2.2 0.0 92 117 297 322 258 326 0.81 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 SMC_N PF02463.14 220 6.5e-11 33.6 0.1 1 1 7.1e-12 1.6e-10 32.3 0.1 26 213 38 231 27 238 0.83 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 SMC_N PF02463.14 220 2.7e-08 25.1 0.5 1 1 2.1e-09 4.8e-08 24.3 0.5 26 213 43 229 30 235 0.76 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 2_3 - 270 VirC1 PF07015.6 231 8.8e-06 16.7 0.0 1 1 3.1e-07 1.4e-05 16.0 0.0 1 46 1 46 1 80 0.89 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_3 - 270 Fer4_NifH PF00142.13 273 3.5e-05 14.8 0.4 1 2 0.00058 0.027 5.4 0.0 8 41 10 43 3 58 0.87 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_3 - 270 Fer4_NifH PF00142.13 273 3.5e-05 14.8 0.4 2 2 0.00015 0.0068 7.3 0.1 186 240 195 251 182 268 0.79 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_23 - 339 AAA_16 PF13191.1 185 7.8e-06 17.8 0.7 1 1 2.8e-07 1.3e-05 17.1 0.7 19 45 31 57 23 245 0.92 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 AAA_23 PF13476.1 202 2.9e-05 16.2 0.1 1 1 1.4e-06 6.3e-05 15.1 0.1 15 40 29 57 20 95 0.80 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 AAA_18 PF13238.1 129 6.8e-06 18.2 0.5 1 1 9.9e-07 1.5e-05 17.1 0.1 1 72 44 130 44 150 0.68 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_23 - 339 AAA_18 PF13238.1 129 0.00014 14.0 1.7 1 2 5e-05 0.00077 11.6 0.1 2 19 40 57 39 90 0.78 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 AAA_18 PF13238.1 129 0.00014 14.0 1.7 2 2 0.095 1.5 1.0 0.0 43 81 179 215 103 244 0.77 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_3 - 270 AAA_18 PF13238.1 129 0.00062 11.9 1.1 1 1 0.00018 0.0028 9.8 0.3 8 69 12 98 11 158 0.52 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_23 - 339 AAA_13 PF13166.1 712 0.00011 12.5 0.1 1 2 0.0026 0.12 2.5 0.0 21 40 41 60 33 90 0.77 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 AAA_13 PF13166.1 712 0.00011 12.5 0.1 2 2 6.1e-05 0.0028 7.9 0.0 527 579 174 225 168 253 0.89 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_3 - 270 CbiA PF01656.18 195 1.5e-28 91.3 0.3 1 2 2.2e-29 5.1e-28 89.6 0.3 1 178 4 214 4 228 0.72 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_3 - 270 CbiA PF01656.18 195 1.5e-28 91.3 0.3 2 2 0.0088 0.2 2.8 0.0 132 179 201 245 194 258 0.78 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_23 - 339 CbiA PF01656.18 195 4.1e-05 14.9 1.2 1 2 0.00043 0.0099 7.1 0.1 4 21 41 58 38 66 0.84 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 CbiA PF01656.18 195 4.1e-05 14.9 1.2 2 2 0.00061 0.014 6.6 0.1 111 169 169 226 154 253 0.83 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_3 - 270 AAA_14 PF13173.1 128 1.1e-06 20.4 2.0 1 1 6.4e-08 2.9e-06 19.0 0.9 12 109 12 100 6 119 0.65 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_23 - 339 AAA_29 PF13555.1 62 9e-08 23.4 0.1 1 1 7.3e-09 1.7e-07 22.6 0.1 21 51 34 64 20 68 0.77 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 AAA_29 PF13555.1 62 3.8e-06 18.2 0.4 1 1 3.4e-07 7.8e-06 17.3 0.4 13 39 32 57 29 62 0.84 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_23 - 339 AAA PF00004.24 132 1.5e-06 20.3 0.3 1 2 2.4e-05 0.0011 11.0 0.0 3 44 41 84 39 108 0.78 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 AAA PF00004.24 132 1.5e-06 20.3 0.3 2 2 0.00068 0.031 6.3 0.0 82 117 146 180 131 195 0.85 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 Sigma54_activat PF00158.21 168 0.00014 13.2 0.3 1 2 9.1e-05 0.0042 8.4 0.1 19 54 38 73 23 88 0.82 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_22 - 320 Sigma54_activat PF00158.21 168 0.00014 13.2 0.3 2 2 0.0047 0.22 2.8 0.0 78 118 155 198 149 230 0.83 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_22 - 320 MMR_HSR1 PF01926.18 116 1.6e-05 16.7 0.2 1 1 1.5e-06 3.5e-05 15.6 0.1 2 61 44 147 43 208 0.68 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_23 - 339 MMR_HSR1 PF01926.18 116 0.00049 11.9 0.6 1 1 3.6e-05 0.00083 11.2 0.6 2 21 39 58 38 247 0.89 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 DUF258 PF03193.11 161 4.4e-06 17.8 0.1 1 1 3.1e-07 7.2e-06 17.1 0.1 21 62 21 63 2 90 0.75 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 DUF258 PF03193.11 161 8.7e-05 13.6 0.2 1 1 6.9e-06 0.00016 12.7 0.2 33 65 38 71 17 93 0.80 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 2_3 - 270 AAA_31 PF13614.1 157 9.5e-18 56.4 0.0 1 1 8.4e-19 3.8e-17 54.4 0.0 2 151 3 154 2 159 0.86 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_23 - 339 AAA_33 PF13671.1 143 5.5e-05 14.9 0.0 1 1 2.2e-06 0.0001 14.0 0.0 1 22 38 59 38 166 0.71 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_3 - 270 KTI12 PF08433.5 270 4.8e-05 14.4 0.0 1 2 3.3e-06 0.00015 12.8 0.0 12 50 13 58 10 85 0.78 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_3 - 270 KTI12 PF08433.5 270 4.8e-05 14.4 0.0 2 2 0.084 3.9 -1.7 0.0 10 21 178 189 177 208 0.88 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_22 - 320 ABC_tran PF00005.22 137 1.5e-35 114.3 0.1 1 1 1.1e-36 2.6e-35 113.5 0.1 2 136 32 182 31 183 0.93 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_23 - 339 ABC_tran PF00005.22 137 7e-33 105.7 0.1 1 1 6.5e-34 1.5e-32 104.6 0.0 3 136 28 184 26 185 0.93 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 AAA_10 PF12846.2 304 6.3e-07 20.8 0.2 1 2 1.8e-05 0.00042 11.6 0.1 4 21 39 56 37 71 0.85 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 AAA_10 PF12846.2 304 6.3e-07 20.8 0.2 2 2 0.00037 0.0084 7.3 0.0 216 268 170 222 131 249 0.74 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 AAA_10 PF12846.2 304 8.5e-05 13.8 0.5 1 2 2e-05 0.00046 11.4 0.3 6 32 46 73 42 139 0.72 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_22 - 320 AAA_10 PF12846.2 304 8.5e-05 13.8 0.5 2 2 0.054 1.2 0.2 0.0 215 265 167 217 137 235 0.79 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_23 - 339 Sigma54_activ_2 PF14532.1 138 7.8e-05 14.6 0.0 1 2 8.9e-05 0.0041 9.0 0.0 20 50 35 65 21 88 0.79 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 Sigma54_activ_2 PF14532.1 138 7.8e-05 14.6 0.0 2 2 0.012 0.54 2.1 0.0 73 96 289 312 269 320 0.85 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_8 - 54 Terminase_GpA PF05876.7 557 0.00019 11.6 0.2 1 1 4.2e-06 0.00019 11.6 0.2 203 244 13 50 8 53 0.85 # 6266 # 6427 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.247 2_3 - 270 AAA_24 PF13479.1 213 1.3e-05 16.7 0.1 1 1 7.4e-07 3.4e-05 15.3 0.1 11 75 10 128 6 129 0.77 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_23 - 339 NACHT PF05729.7 166 0.00012 13.6 0.0 1 1 5.1e-06 0.00023 12.6 0.0 2 21 38 57 37 67 0.87 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 AAA_25 PF13481.1 194 7.5e-07 20.5 0.1 1 2 3.8e-07 8.7e-06 17.0 0.0 29 54 32 57 4 60 0.80 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_23 - 339 AAA_25 PF13481.1 194 7.5e-07 20.5 0.1 2 2 0.029 0.67 1.1 0.0 134 188 166 215 126 216 0.66 # 22967 # 23983 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_22 - 320 AAA_25 PF13481.1 194 0.0003 12.0 0.1 1 2 0.00019 0.0043 8.2 0.0 30 50 38 58 30 107 0.91 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_22 - 320 AAA_25 PF13481.1 194 0.0003 12.0 0.1 2 2 0.024 0.55 1.4 0.0 165 188 190 213 161 214 0.80 # 22011 # 22970 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 2_3 - 270 APS_kinase PF01583.15 157 0.00031 12.2 0.0 1 2 4.4e-05 0.002 9.6 0.0 10 41 10 41 2 91 0.73 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_3 - 270 APS_kinase PF01583.15 157 0.00031 12.2 0.0 2 2 0.054 2.5 -0.5 0.0 69 89 135 155 132 167 0.86 # 1977 # 2786 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/851f3b15-0b24-4e3d-8a81-8bf97a406cdf # Target file: checkm_output/bins/pCP000429.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP000429.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/851f3b15-0b24-4e3d-8a81-8bf97a406cdf checkm_output/bins/pCP000429.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:37 2020 # [ok]