# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 161 AAA_23 PF13476.1 202 0.00012 12.3 10.0 1 1 2.5e-05 0.00015 12.0 10.0 90 198 40 154 5 158 0.44 # 5517 # 5999 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_2 - 215 AAA_23 PF13476.1 202 0.052 3.7 31.2 1 1 0.014 0.085 3.0 31.2 93 202 64 194 13 202 0.59 # 109 # 753 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_7 - 161 Ribosomal_S15 PF00312.17 83 3.2e-05 13.6 3.4 1 1 9.5e-06 0.00011 11.9 3.4 22 66 108 158 92 160 0.76 # 5517 # 5999 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 1_7 - 161 AAA_32 PF13654.1 509 2.9e-05 12.7 4.0 1 1 2.7e-06 3.2e-05 12.6 4.0 128 242 46 157 12 159 0.80 # 5517 # 5999 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.284 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/67be85aa-0775-4fdd-b60b-4c2abefdfb30 # Target file: checkm_output/bins/pCP000427.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP000427.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/67be85aa-0775-4fdd-b60b-4c2abefdfb30 checkm_output/bins/pCP000427.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:35 2020 # [ok]