# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 714 ABC_ATPase PF09818.4 448 2.5e-05 13.0 0.2 1 2 0.04 0.56 -1.3 0.0 226 262 487 523 461 527 0.82 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 ABC_ATPase PF09818.4 448 2.5e-05 13.0 0.2 2 2 6.1e-06 8.5e-05 11.3 0.0 304 378 597 672 590 686 0.89 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 DUF87 PF01935.12 229 0.00013 11.9 0.1 1 2 9.4e-06 0.00013 11.9 0.1 26 45 508 527 501 534 0.92 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 DUF87 PF01935.12 229 0.00013 11.9 0.1 2 2 0.075 1 -0.9 0.0 140 208 605 668 570 678 0.68 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 AAA_22 PF13401.1 131 3.2e-07 20.7 2.1 1 1 3.4e-07 4.7e-06 16.9 2.1 7 118 508 666 506 680 0.70 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 3_1 - 194 N6_N4_Mtase PF01555.13 231 6.2e-17 51.9 0.1 1 2 0.048 0.67 -0.6 0.4 65 78 65 79 5 106 0.53 # 107 # 688 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 3_1 - 194 N6_N4_Mtase PF01555.13 231 6.2e-17 51.9 0.1 2 2 4.4e-18 6.2e-17 51.9 0.1 1 60 124 187 124 192 0.94 # 107 # 688 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 2_2 - 714 AAA_17 PF13207.1 121 2.6e-08 24.9 0.1 1 1 5.7e-09 7.9e-08 23.3 0.1 1 32 507 543 507 613 0.74 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 AAA_21 PF13304.1 303 1.3e-10 31.7 5.6 1 2 0.044 0.61 0.0 0.5 65 126 445 502 389 509 0.55 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 AAA_21 PF13304.1 303 1.3e-10 31.7 5.6 2 2 9.4e-12 1.3e-10 31.7 5.6 3 300 509 675 507 678 0.84 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 MobB PF03205.9 140 7.4e-05 12.6 0.1 1 1 1.3e-05 0.00018 11.4 0.1 3 23 508 528 506 538 0.90 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 SMC_N PF02463.14 220 1.2e-05 14.7 3.4 1 2 0.004 0.056 2.7 0.1 27 41 508 522 477 529 0.84 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 SMC_N PF02463.14 220 1.2e-05 14.7 3.4 2 2 7.1e-06 0.0001 11.7 0.1 136 209 616 684 541 692 0.81 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 AAA_16 PF13191.1 185 3.2e-05 14.1 0.0 1 1 4.5e-06 6.3e-05 13.1 0.0 27 57 508 538 499 659 0.81 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 AAA_18 PF13238.1 129 1.1e-06 19.1 0.1 1 1 3.6e-07 5e-06 17.0 0.0 1 30 508 542 508 602 0.79 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_3 - 457 AAA_13 PF13166.1 712 9.8e-05 11.0 38.5 1 2 4.8e-05 0.00067 8.2 14.6 339 458 73 192 45 201 0.93 # 2951 # 4321 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.334 2_3 - 457 AAA_13 PF13166.1 712 9.8e-05 11.0 38.5 2 2 3.9e-05 0.00055 8.5 15.9 343 457 209 318 195 325 0.83 # 2951 # 4321 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.334 2_2 - 714 AAA_14 PF13173.1 128 0.00011 12.3 3.1 1 1 1.7e-05 0.00023 11.2 0.0 5 46 508 550 505 576 0.73 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 AAA_29 PF13555.1 62 8.2e-06 15.5 0.1 1 1 1.8e-06 2.5e-05 14.0 0.0 17 39 500 521 495 531 0.85 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 AAA PF00004.24 132 9e-05 12.8 0.0 1 1 3.6e-05 0.00051 10.4 0.0 2 38 509 575 508 672 0.66 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 DUF258 PF03193.11 161 9.2e-06 15.1 0.0 1 1 1.4e-06 1.9e-05 14.0 0.0 13 59 481 529 471 597 0.81 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 2_2 - 714 AAA_33 PF13671.1 143 1.2e-05 15.3 0.1 1 1 1.7e-06 2.4e-05 14.4 0.1 2 21 508 527 508 541 0.92 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 3_1 - 194 Methyltransf_26 PF13659.1 117 0.00014 12.1 0.0 1 1 1.2e-05 0.00017 11.8 0.0 62 114 115 182 43 185 0.79 # 107 # 688 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 1_3 - 134 eIF-5a PF01287.15 69 0.00031 10.9 4.3 1 2 7.6e-05 0.0011 9.2 1.0 21 55 1 35 1 39 0.88 # 1283 # 1684 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_3 - 134 eIF-5a PF01287.15 69 0.00031 10.9 4.3 2 2 0.0097 0.14 2.4 0.1 21 47 102 127 97 131 0.78 # 1283 # 1684 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 2_2 - 714 ABC_tran PF00005.22 137 1.5e-35 112.7 0.0 1 1 2.2e-36 3e-35 111.6 0.0 1 137 495 645 495 645 0.87 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 3_1 - 194 Cons_hypoth95 PF03602.10 183 7.7e-07 18.8 0.1 1 2 4.1e-07 5.7e-06 15.9 0.0 108 129 118 138 80 165 0.74 # 107 # 688 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 3_1 - 194 Cons_hypoth95 PF03602.10 183 7.7e-07 18.8 0.1 2 2 0.03 0.43 0.1 0.0 135 157 165 187 145 192 0.81 # 107 # 688 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 2_2 - 714 AAA_10 PF12846.2 304 4.8e-05 13.0 0.1 1 1 7.2e-06 0.0001 11.9 0.1 5 25 509 529 506 548 0.87 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 3_1 - 194 MethyltransfD12 PF02086.10 260 6.6e-07 19.1 3.7 1 1 7.1e-08 9.9e-07 18.5 3.7 95 214 40 157 3 177 0.66 # 107 # 688 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.287 2_2 - 714 AAA_5 PF07728.9 139 6.3e-05 12.9 0.0 1 1 2.9e-05 0.00041 10.2 0.0 2 24 508 533 507 573 0.80 # 794 # 2935 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.356 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/35ca8fdb-6c58-4b78-b14d-0eeb258b6c70 # Target file: checkm_output/bins/pCP000426.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP000426.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/35ca8fdb-6c58-4b78-b14d-0eeb258b6c70 checkm_output/bins/pCP000426.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:36 2020 # [ok]