# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 85 Ribosomal_L21e PF01157.13 99 6.4e-05 12.3 0.0 1 1 8.7e-06 7.8e-05 12.0 0.0 15 69 11 66 7 80 0.80 # 6074 # 6328 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.298 1_1 - 463 Seryl_tRNA_N PF02403.17 108 0.0013 8.3 38.8 1 5 0.0089 0.08 2.6 2.9 2 80 3 89 3 105 0.57 # 3 # 1391 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_1 - 463 Seryl_tRNA_N PF02403.17 108 0.0013 8.3 38.8 2 5 0.0042 0.038 3.6 3.6 60 100 188 228 150 231 0.74 # 3 # 1391 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_1 - 463 Seryl_tRNA_N PF02403.17 108 0.0013 8.3 38.8 3 5 0.00092 0.0083 5.7 13.4 24 108 204 292 184 292 0.88 # 3 # 1391 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_1 - 463 Seryl_tRNA_N PF02403.17 108 0.0013 8.3 38.8 4 5 0.043 0.39 0.4 0.4 36 76 319 360 307 375 0.69 # 3 # 1391 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_1 - 463 Seryl_tRNA_N PF02403.17 108 0.0013 8.3 38.8 5 5 1.5e-05 0.00014 11.5 3.9 23 101 352 427 337 432 0.82 # 3 # 1391 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_7 - 78 LpxK PF02606.9 326 6.4e-05 11.4 0.1 1 1 8.1e-06 7.3e-05 11.2 0.1 271 308 19 58 7 62 0.66 # 5665 # 5898 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.278 1_1 - 463 AAA_13 PF13166.1 712 0.018 2.9 45.0 1 3 0.00096 0.0086 3.9 3.5 399 443 18 62 6 105 0.45 # 3 # 1391 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_1 - 463 AAA_13 PF13166.1 712 0.018 2.9 45.0 2 3 0.0027 0.024 2.4 19.6 287 419 161 288 149 340 0.66 # 3 # 1391 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_1 - 463 AAA_13 PF13166.1 712 0.018 2.9 45.0 3 3 0.00063 0.0056 4.5 23.0 283 479 222 436 221 458 0.54 # 3 # 1391 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_5 - 187 AAA PF00004.24 132 0.00058 9.6 7.0 1 1 0.0002 0.0018 8.0 7.0 47 100 93 157 7 180 0.71 # 3921 # 4481 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.339 1_1 - 463 RNA_pol_Rpb1_5 PF04998.12 277 0.036 2.7 21.3 1 1 6.1e-06 5.5e-05 12.0 8.0 118 251 32 280 7 288 0.79 # 3 # 1391 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1d0851ed-7a2b-4a85-b519-1031fce01469 # Target file: checkm_output/bins/pCP000043.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCP000043.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1d0851ed-7a2b-4a85-b519-1031fce01469 checkm_output/bins/pCP000043.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:31 2020 # [ok]