# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 822 cobW PF02492.14 178 0.00023 12.0 0.0 1 1 1.3e-05 0.00046 11.1 0.0 3 21 457 475 455 487 0.84 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_16 - 229 Thymidylate_kin PF02223.12 186 8e-06 16.7 0.2 1 2 9.2e-06 0.00032 11.5 0.0 6 44 11 51 10 62 0.77 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_16 - 229 Thymidylate_kin PF02223.12 186 8e-06 16.7 0.2 2 2 0.0039 0.14 2.9 0.3 133 169 187 225 150 228 0.74 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_6 - 313 ABC_ATPase PF09818.4 448 6.4e-06 16.3 0.1 1 1 2.8e-07 9.9e-06 15.7 0.1 218 301 116 199 104 207 0.84 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_29 - 148 FeoB_N PF02421.13 156 0.00011 12.9 1.2 1 1 4.6e-06 0.00016 12.4 1.2 13 94 56 135 47 139 0.92 # 21017 # 21460 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.241 1_6 - 313 IstB_IS21 PF01695.12 178 3.6e-06 17.9 0.0 1 1 1.8e-07 6.4e-06 17.1 0.0 38 81 136 179 110 208 0.67 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 229 MipZ PF09140.6 261 1.4e-16 51.7 0.3 1 2 3.5e-15 6.1e-14 43.1 0.2 2 140 2 121 1 136 0.83 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_16 - 229 MipZ PF09140.6 261 1.4e-16 51.7 0.3 2 2 0.077 1.4 -0.7 0.0 127 169 131 173 123 205 0.74 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_21 - 240 MipZ PF09140.6 261 3e-05 14.6 0.0 1 1 2.4e-06 4.1e-05 14.1 0.0 5 46 7 48 3 88 0.90 # 13880 # 14599 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.282 1_16 - 229 YhjQ PF06564.7 244 2.7e-05 15.0 0.0 1 1 1.3e-06 4.7e-05 14.2 0.0 10 42 9 41 1 54 0.89 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_25 - 121 SSB PF00436.20 104 6.2e-22 69.0 0.0 1 1 2.1e-23 7.3e-22 68.7 0.0 1 103 2 98 2 99 0.96 # 18775 # 19137 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 1_31 - 232 DNA_pack_N PF02500.10 284 8.8e-06 16.8 0.1 1 1 5e-07 1.7e-05 15.8 0.1 201 262 41 103 39 110 0.74 # 22393 # 23088 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.307 1_6 - 313 DUF87 PF01935.12 229 2.1e-06 19.1 0.1 1 1 3.7e-07 4.3e-06 18.1 0.1 24 58 144 179 125 215 0.89 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 229 DUF87 PF01935.12 229 7.3e-05 14.1 1.4 1 2 0.00021 0.0024 9.1 0.0 33 60 11 37 9 39 0.94 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_16 - 229 DUF87 PF01935.12 229 7.3e-05 14.1 1.4 2 2 0.0071 0.083 4.0 0.4 54 146 81 182 63 225 0.66 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_3 - 822 DUF87 PF01935.12 229 7.8e-05 14.0 1.2 1 1 0.0001 0.0012 10.1 0.0 10 44 441 475 436 491 0.70 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_22 PF13401.1 131 2.8e-10 31.9 0.3 1 2 0.025 0.88 1.2 0.0 88 112 132 162 90 205 0.68 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_22 PF13401.1 131 2.8e-10 31.9 0.3 2 2 2e-08 7e-07 20.9 0.0 5 87 455 568 451 690 0.73 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_6 - 313 ATP_bind_1 PF03029.12 238 0.00011 13.2 0.1 1 1 1.9e-05 0.00034 11.6 0.0 1 24 148 171 148 191 0.82 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_3 - 822 ATP_bind_1 PF03029.12 238 0.00025 12.0 0.0 1 2 0.0042 0.073 4.0 0.0 182 237 150 205 104 206 0.70 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 ATP_bind_1 PF03029.12 238 0.00025 12.0 0.0 2 2 0.0015 0.026 5.4 0.0 1 16 459 474 459 483 0.86 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_16 - 229 SRP54 PF00448.17 196 1.4e-08 25.8 0.1 1 1 1e-09 3.6e-08 24.4 0.0 11 99 11 95 2 141 0.84 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_3 - 822 AAA_17 PF13207.1 121 2.1e-05 16.8 1.9 1 1 1.9e-05 0.00017 13.9 0.0 3 18 458 473 457 559 0.89 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_21 - 240 AAA_17 PF13207.1 121 2.8e-05 16.4 0.3 1 1 9.3e-06 8.1e-05 14.9 0.2 5 78 9 109 6 180 0.67 # 13880 # 14599 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.282 1_6 - 313 AAA_17 PF13207.1 121 4.1e-05 15.9 1.4 1 1 1.8e-05 0.00016 14.0 1.1 2 19 146 163 145 197 0.91 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 229 AAA_17 PF13207.1 121 5.3e-05 15.5 0.4 1 1 3.1e-05 0.00027 13.2 0.4 9 32 11 39 10 222 0.81 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_34 - 263 Adenylsucc_synt PF00709.16 421 0.00017 11.7 6.1 1 2 0.0013 0.047 3.6 0.1 359 404 86 132 56 141 0.77 # 24596 # 25384 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.309 1_34 - 263 Adenylsucc_synt PF00709.16 421 0.00017 11.7 6.1 2 2 1.8e-05 0.00064 9.8 1.7 139 221 159 237 145 255 0.81 # 24596 # 25384 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.309 1_16 - 229 ArsA_ATPase PF02374.10 305 1.5e-10 31.9 0.6 1 1 1.8e-11 3.2e-10 30.9 0.6 6 109 6 110 1 217 0.86 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_21 - 240 ArsA_ATPase PF02374.10 305 1.7e-06 18.6 0.1 1 1 2.2e-07 3.8e-06 17.5 0.0 4 40 6 42 3 60 0.92 # 13880 # 14599 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.282 1_6 - 313 PhoH PF02562.11 205 2.3e-05 15.1 0.2 1 1 1.4e-06 4.7e-05 14.1 0.0 5 57 128 181 125 204 0.75 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 T2SE PF00437.15 272 1.3e-83 271.4 0.3 1 1 4.7e-85 1.7e-83 271.0 0.3 8 269 24 285 19 288 0.98 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 G-alpha PF00503.15 389 0.00016 11.8 0.1 1 1 6.2e-06 0.00022 11.4 0.1 46 79 131 164 121 296 0.74 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 Zeta_toxin PF06414.7 201 7.3e-06 16.6 0.0 1 1 7.7e-07 1.4e-05 15.7 0.0 14 49 141 180 129 220 0.72 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 229 Zeta_toxin PF06414.7 201 5.4e-05 13.7 0.2 1 2 1.9e-05 0.00033 11.2 0.0 25 55 10 42 8 103 0.72 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_16 - 229 Zeta_toxin PF06414.7 201 5.4e-05 13.7 0.2 2 2 0.057 1 -0.2 0.0 154 188 144 178 138 191 0.80 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_3 - 822 SMC_N PF02463.14 220 0.00031 11.4 0.1 1 2 0.033 1.2 -0.3 0.1 70 125 53 108 42 119 0.68 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 SMC_N PF02463.14 220 0.00031 11.4 0.1 2 2 8.1e-05 0.0028 8.3 0.0 25 46 455 475 446 485 0.87 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_16 - 229 VirC1 PF07015.6 231 2.4e-13 41.0 0.1 1 1 1.2e-14 4.3e-13 40.2 0.1 4 150 3 145 1 205 0.76 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_16 - 229 Fer4_NifH PF00142.13 273 6.8e-08 23.3 0.1 1 1 1.3e-08 2.4e-07 21.6 0.0 7 54 8 53 2 92 0.74 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_21 - 240 Fer4_NifH PF00142.13 273 5.9e-06 17.0 0.0 1 1 5.7e-07 1e-05 16.2 0.0 4 74 7 75 4 92 0.77 # 13880 # 14599 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.282 1_3 - 822 Arch_ATPase PF01637.13 234 0.00012 13.2 3.2 1 3 0.031 1.1 0.3 0.9 82 128 137 188 84 202 0.59 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 Arch_ATPase PF01637.13 234 0.00012 13.2 3.2 2 3 2.5e-05 0.00088 10.4 0.0 23 57 457 491 455 500 0.84 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 Arch_ATPase PF01637.13 234 0.00012 13.2 3.2 3 3 0.067 2.3 -0.8 0.1 85 131 611 659 551 690 0.62 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_16 PF13191.1 185 2.3e-05 15.9 0.0 1 1 1.3e-05 0.00011 13.6 0.0 25 51 455 481 445 529 0.87 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_21 - 240 AAA_16 PF13191.1 185 5.4e-05 14.6 0.0 1 1 8.2e-06 7.2e-05 14.2 0.0 27 119 6 102 5 148 0.79 # 13880 # 14599 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.282 1_6 - 313 AAA_16 PF13191.1 185 8.2e-05 14.1 0.1 1 1 1.9e-05 0.00017 13.0 0.1 22 50 141 169 133 277 0.91 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 229 AAA_16 PF13191.1 185 0.00013 13.4 0.0 1 1 2.3e-05 0.0002 12.8 0.0 34 77 11 61 9 180 0.70 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_3 - 822 AAA_23 PF13476.1 202 1.6e-05 16.7 0.3 1 2 0.0063 0.11 4.2 0.7 105 200 93 168 17 211 0.51 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_23 PF13476.1 202 1.6e-05 16.7 0.3 2 2 9.3e-07 1.6e-05 16.7 0.3 20 42 455 477 444 626 0.88 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_6 - 313 AAA_23 PF13476.1 202 0.0015 10.3 6.4 1 2 0.046 0.8 1.4 0.2 103 172 12 80 2 146 0.51 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 AAA_23 PF13476.1 202 0.0015 10.3 6.4 2 2 7e-05 0.0012 10.6 3.1 19 39 143 163 127 306 0.93 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 229 AAA_18 PF13238.1 129 6.8e-07 21.1 1.0 1 1 4.7e-07 5.5e-06 18.2 0.0 8 81 11 110 9 129 0.65 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_3 - 822 AAA_18 PF13238.1 129 8.4e-05 14.3 2.2 1 2 0.043 0.5 2.1 0.6 11 80 95 195 95 204 0.66 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_18 PF13238.1 129 8.4e-05 14.3 2.2 2 2 0.00015 0.0018 10.1 0.0 2 16 458 472 458 492 0.91 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_6 - 313 AAA_18 PF13238.1 129 0.018 6.8 9.0 1 2 0.00024 0.0028 9.4 2.0 1 18 146 163 146 192 0.75 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 AAA_18 PF13238.1 129 0.018 6.8 9.0 2 2 0.065 0.76 1.5 0.1 72 111 173 208 161 222 0.76 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 229 CbiA PF01656.18 195 7.9e-26 82.0 0.7 1 1 8.4e-27 1.5e-25 81.2 0.7 1 176 3 161 3 193 0.74 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_21 - 240 CbiA PF01656.18 195 1e-11 36.0 0.2 1 1 1.2e-12 2.1e-11 35.0 0.2 3 105 7 93 5 116 0.63 # 13880 # 14599 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.282 1_6 - 313 KaiC PF06745.8 227 8.2e-06 16.5 0.4 1 1 4.2e-07 1.5e-05 15.6 0.0 12 46 136 169 114 197 0.78 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_3 - 822 AAA_14 PF13173.1 128 0.0025 9.2 11.5 1 4 0.053 1.9 -0.1 0.9 60 82 126 157 74 171 0.48 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_14 PF13173.1 128 0.0025 9.2 11.5 2 4 0.0001 0.0035 8.7 0.0 5 27 457 479 455 500 0.76 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_14 PF13173.1 128 0.0025 9.2 11.5 3 4 0.01 0.37 2.2 0.1 48 109 630 700 599 710 0.61 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_14 PF13173.1 128 0.0025 9.2 11.5 4 4 0.049 1.7 0.0 0.1 14 42 769 808 767 820 0.57 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_29 PF13555.1 62 1.3e-06 19.3 0.0 1 1 2e-07 3.5e-06 18.0 0.0 22 42 454 473 444 493 0.78 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_6 - 313 AAA_29 PF13555.1 62 9.7e-06 16.6 1.1 1 1 6.9e-07 1.2e-05 16.3 0.0 20 44 141 164 131 174 0.85 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_3 - 822 AAA PF00004.24 132 3.4e-07 22.0 0.2 1 3 0.00061 0.021 6.5 0.0 31 74 287 331 260 344 0.85 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA PF00004.24 132 3.4e-07 22.0 0.2 2 3 0.00015 0.0052 8.4 0.0 2 19 458 475 457 495 0.82 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA PF00004.24 132 3.4e-07 22.0 0.2 3 3 0.014 0.48 2.1 0.0 49 113 635 691 630 707 0.75 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_17 - 132 Ribosomal_L20 PF00453.13 108 6.7e-05 14.3 0.5 1 1 3.2e-06 0.00011 13.6 0.5 17 65 61 115 47 119 0.72 # 11966 # 12361 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.245 1_6 - 313 Sigma54_activat PF00158.21 168 6.3e-05 13.9 0.0 1 1 3.5e-06 0.00012 13.0 0.0 13 45 134 166 124 198 0.75 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 MMR_HSR1 PF01926.18 116 0.0003 12.2 1.4 1 1 7.8e-05 0.0014 10.1 1.4 2 26 146 169 145 311 0.76 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_3 - 822 MMR_HSR1 PF01926.18 116 0.0003 12.2 0.1 1 1 7.4e-05 0.0013 10.2 0.1 3 21 458 478 456 684 0.89 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_6 - 313 DUF258 PF03193.11 161 0.00028 11.5 0.0 1 1 1.4e-05 0.00048 10.8 0.0 21 59 128 167 110 209 0.83 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_22 - 608 TraG-D_C PF12696.2 128 4.5e-31 98.8 0.1 1 1 2.5e-32 8.7e-31 97.9 0.1 2 127 432 552 431 553 0.89 # 14610 # 16433 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_16 - 229 AAA_31 PF13614.1 157 3.9e-13 41.0 0.1 1 1 6e-13 1e-11 36.4 0.0 2 124 2 120 1 120 0.88 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_21 - 240 AAA_31 PF13614.1 157 2.6e-06 18.9 0.1 1 2 9.7e-07 1.7e-05 16.2 0.0 1 63 3 63 3 109 0.77 # 13880 # 14599 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.282 1_21 - 240 AAA_31 PF13614.1 157 2.6e-06 18.9 0.1 2 2 0.074 1.3 0.3 0.0 25 61 175 212 173 227 0.75 # 13880 # 14599 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.282 1_3 - 822 AAA_33 PF13671.1 143 0.00015 13.1 0.0 1 1 2.6e-05 0.00046 11.5 0.0 3 20 458 475 457 485 0.86 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_6 - 313 AAA_33 PF13671.1 143 0.00029 12.2 0.7 1 1 3.4e-05 0.0006 11.1 0.7 2 20 146 164 146 280 0.83 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 AAA_30 PF13604.1 196 7.4e-06 17.1 0.0 1 1 4.2e-07 1.5e-05 16.1 0.0 2 51 128 178 127 209 0.80 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 FtsK_SpoIIIE PF01580.13 205 3.8e-10 30.9 0.0 1 1 3.7e-11 6.5e-10 30.2 0.0 30 93 135 197 120 223 0.76 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_3 - 822 FtsK_SpoIIIE PF01580.13 205 5e-06 17.5 0.0 1 1 7.3e-07 1.3e-05 16.2 0.0 34 61 448 477 430 494 0.79 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 ABC_tran PF00005.22 137 1.3e-05 16.9 0.1 1 1 4.8e-06 8.3e-05 14.3 0.0 4 32 447 475 445 507 0.87 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_6 - 313 ABC_tran PF00005.22 137 3.3e-05 15.6 0.4 1 1 3.9e-06 6.8e-05 14.6 0.4 8 37 140 169 136 276 0.86 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 AAA_19 PF13245.1 76 4.3e-06 17.9 0.0 1 1 8.7e-07 1e-05 16.7 0.0 2 48 135 179 134 190 0.77 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 229 AAA_19 PF13245.1 76 2e-05 15.8 0.0 1 1 4e-06 4.7e-05 14.6 0.0 20 48 11 35 3 48 0.89 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_3 - 822 AAA_19 PF13245.1 76 7.7e-05 13.9 0.0 1 1 1.4e-05 0.00017 12.8 0.0 14 34 458 478 449 501 0.81 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_10 PF12846.2 304 6.9e-35 112.3 0.1 1 2 0.014 0.1 3.4 0.1 85 185 118 279 78 286 0.56 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_10 PF12846.2 304 6.9e-35 112.3 0.1 2 2 6e-34 4.2e-33 106.4 0.0 2 290 455 716 454 725 0.88 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_22 - 608 AAA_10 PF12846.2 304 2e-07 22.1 0.0 1 1 5.7e-08 4e-07 21.1 0.0 3 298 152 505 150 511 0.69 # 14610 # 16433 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_6 - 313 AAA_10 PF12846.2 304 3.6e-06 18.0 0.0 1 1 6.8e-07 4.8e-06 17.6 0.0 2 36 144 181 143 285 0.88 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_21 - 240 AAA_10 PF12846.2 304 1.9e-05 15.6 0.2 1 1 4.1e-06 2.9e-05 15.0 0.2 3 63 5 66 4 195 0.81 # 13880 # 14599 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.282 1_16 - 229 AAA_10 PF12846.2 304 4.3e-05 14.4 0.1 1 1 1e-05 7.2e-05 13.7 0.1 11 115 11 128 9 226 0.60 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_6 - 313 ResIII PF04851.10 184 2.5e-06 18.9 0.1 1 1 1.4e-07 4.9e-06 17.9 0.1 4 62 128 185 125 198 0.87 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_3 - 822 Zot PF05707.7 193 3.9e-07 21.1 0.0 1 3 0.0053 0.19 2.6 0.0 80 145 273 344 242 367 0.76 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 Zot PF05707.7 193 3.9e-07 21.1 0.0 2 3 0.027 0.95 0.3 0.0 4 15 458 469 457 475 0.87 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 Zot PF05707.7 193 3.9e-07 21.1 0.0 3 3 3e-06 0.0001 13.2 0.0 81 127 648 690 629 694 0.83 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_16 - 229 DUF2075 PF09848.4 352 0.0002 11.7 0.2 1 2 2e-05 0.0007 10.0 0.0 5 90 5 86 2 130 0.79 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_16 - 229 DUF2075 PF09848.4 352 0.0002 11.7 0.2 2 2 0.03 1 -0.5 0.1 200 225 152 177 150 210 0.75 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_6 - 313 DEAD PF00270.24 169 1.1e-07 22.9 0.1 1 1 5.3e-09 1.9e-07 22.2 0.1 1 64 129 193 129 234 0.77 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_22 - 608 TrwB_AAD_bind PF10412.4 386 3e-26 83.3 0.0 1 1 1.9e-26 3.4e-25 79.8 0.0 16 368 151 554 138 568 0.67 # 14610 # 16433 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_6 - 313 TrwB_AAD_bind PF10412.4 386 2.5e-07 21.0 0.2 1 1 2.8e-08 4.9e-07 20.0 0.1 9 52 137 182 131 201 0.82 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_3 - 822 AAA_11 PF13086.1 236 3.3e-05 14.9 0.0 1 2 1.1e-05 0.00037 11.5 0.0 17 42 454 479 443 578 0.81 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_3 - 822 AAA_11 PF13086.1 236 3.3e-05 14.9 0.0 2 2 0.04 1.4 -0.2 0.0 2 39 736 783 735 816 0.78 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_17 - 132 Sigma54_activ_2 PF14532.1 138 7.9e-05 14.2 0.2 1 1 3.3e-06 0.00012 13.6 0.2 74 119 60 104 45 111 0.86 # 11966 # 12361 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.245 1_22 - 608 T4SS-DNA_transf PF02534.9 469 5.1e-100 326.6 0.1 1 1 2.1e-101 7.4e-100 326.0 0.1 10 459 110 598 101 605 0.83 # 14610 # 16433 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_16 - 229 NAD_binding_5 PF07994.7 295 0.00022 12.2 0.1 1 1 7.9e-06 0.00028 11.8 0.1 124 184 148 206 91 215 0.74 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_6 - 313 Pox_A32 PF04665.7 241 0.00036 11.3 2.5 1 2 1.4e-05 0.00048 10.8 0.2 12 37 142 167 133 180 0.82 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 Pox_A32 PF04665.7 241 0.00036 11.3 2.5 2 2 0.019 0.66 0.6 0.0 185 220 167 204 160 211 0.75 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 RNA_helicase PF00910.17 107 0.00026 12.6 0.0 1 1 2.4e-05 0.00086 11.0 0.0 1 24 146 169 146 197 0.82 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_6 - 313 UPF0079 PF02367.12 123 8.8e-05 13.6 0.1 1 1 1.3e-05 0.00047 11.2 0.0 10 41 138 169 130 187 0.82 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 229 AAA_24 PF13479.1 213 3.9e-05 14.7 0.4 1 1 2.2e-06 7.8e-05 13.7 0.1 11 79 9 90 3 104 0.74 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_6 - 313 UvrD-helicase PF00580.16 315 0.00027 11.7 0.6 1 1 9.7e-06 0.00034 11.3 0.6 8 35 139 164 128 298 0.85 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_3 - 822 NACHT PF05729.7 166 5.5e-06 17.5 0.0 1 1 1.3e-06 2.3e-05 15.5 0.0 4 26 458 480 456 489 0.89 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_6 - 313 NACHT PF05729.7 166 2.1e-05 15.7 0.0 1 1 2.9e-06 5.1e-05 14.4 0.0 3 47 146 187 144 201 0.82 # 3956 # 4894 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_3 - 822 AAA_25 PF13481.1 194 2.7e-06 18.3 0.0 1 1 4.1e-07 7.1e-06 16.9 0.0 33 58 455 479 428 580 0.80 # 894 # 3359 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_16 - 229 AAA_25 PF13481.1 194 6.8e-05 13.7 0.1 1 1 1.1e-05 0.00018 12.3 0.0 42 66 10 36 5 87 0.86 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_16 - 229 APS_kinase PF01583.15 157 8.2e-05 13.7 0.0 1 1 7e-06 0.00024 12.2 0.0 11 39 10 38 3 50 0.91 # 11188 # 11874 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3071dde4-21f8-41fa-bd6c-5a1494d732df # Target file: checkm_output/bins/pCM007862.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pCM007862.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3071dde4-21f8-41fa-bd6c-5a1494d732df checkm_output/bins/pCM007862.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:24 2020 # [ok]