# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 871 Mg_chelatase PF01078.16 207 4e-05 14.6 0.0 1 1 3.3e-06 7.5e-05 13.7 0.0 19 56 491 527 479 532 0.79 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_28 - 222 Mg_chelatase PF01078.16 207 0.00017 12.6 0.0 1 1 1e-05 0.00024 12.1 0.0 24 43 54 73 33 90 0.81 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_37 - 272 MipZ PF09140.6 261 1.8e-11 35.3 0.0 1 2 8.6e-10 4e-08 24.4 0.0 3 44 5 46 3 64 0.90 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_37 - 272 MipZ PF09140.6 261 1.8e-11 35.3 0.0 2 2 4.6e-05 0.0021 8.9 0.0 82 123 114 155 92 166 0.78 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_37 - 272 YhjQ PF06564.7 244 9.9e-06 16.8 0.0 1 1 2e-06 9e-05 13.7 0.0 9 150 10 163 3 168 0.60 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_46 - 1431 UvrD_C_2 PF13538.1 104 7.2e-06 18.0 0.0 1 1 8.3e-07 3.8e-05 15.6 0.0 3 96 835 939 833 945 0.69 # 34813 # 39105 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.744 1_37 - 272 DUF87 PF01935.12 229 0.00049 11.7 0.0 1 1 1.6e-05 0.00073 11.2 0.0 33 68 13 49 7 132 0.69 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_28 - 222 NB-ARC PF00931.17 287 0.00017 12.3 0.0 1 1 5.3e-06 0.00024 11.8 0.0 2 38 35 71 34 77 0.92 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_46 - 1431 AAA_22 PF13401.1 131 1.9e-05 16.6 2.0 1 1 5.1e-06 7.8e-05 14.7 0.0 8 126 591 697 582 701 0.89 # 34813 # 39105 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.744 1_21 - 871 AAA_22 PF13401.1 131 0.00018 13.5 0.0 1 1 2.7e-05 0.00042 12.3 0.0 5 28 494 517 491 621 0.72 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_28 - 222 AAA_22 PF13401.1 131 0.00029 12.8 0.0 1 1 3.2e-05 0.00049 12.1 0.1 5 26 53 74 49 176 0.91 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_37 - 272 ATP_bind_1 PF03029.12 238 0.00031 12.1 0.0 1 2 0.00024 0.011 7.0 0.0 6 35 13 42 11 54 0.91 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_37 - 272 ATP_bind_1 PF03029.12 238 0.00031 12.1 0.0 2 2 0.0052 0.24 2.7 0.0 75 99 120 139 90 143 0.84 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_5 - 256 ATP_bind_2 PF03668.10 284 1.5e-14 45.5 0.0 1 1 4.7e-16 2.2e-14 45.0 0.0 162 282 2 128 1 130 0.83 # 2589 # 3356 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_28 - 222 AAA_17 PF13207.1 121 3.7e-11 35.8 0.0 1 1 2.2e-12 5e-11 35.3 0.0 2 111 55 172 54 197 0.69 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 871 AAA_17 PF13207.1 121 8.3e-05 15.3 0.2 1 1 8.7e-05 0.002 10.8 0.0 2 23 496 517 495 599 0.81 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_37 - 272 MobB PF03205.9 140 0.0003 12.3 0.1 1 2 3.5e-05 0.0016 10.0 0.0 7 41 10 42 3 47 0.79 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_37 - 272 MobB PF03205.9 140 0.0003 12.3 0.1 2 2 0.05 2.3 -0.3 0.0 90 105 160 175 136 204 0.76 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_37 - 272 ArsA_ATPase PF02374.10 305 1.4e-09 29.2 0.1 1 2 2.4e-10 1.1e-08 26.2 0.0 2 49 4 51 3 81 0.89 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_37 - 272 ArsA_ATPase PF02374.10 305 1.4e-09 29.2 0.1 2 2 0.014 0.64 0.7 0.0 226 252 180 206 153 216 0.65 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_28 - 222 Arf PF00025.16 175 0.00048 11.2 0.0 1 1 1.7e-05 0.00077 10.5 0.0 3 42 40 80 38 86 0.76 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_28 - 222 SKI PF01202.17 158 0.0002 13.1 0.1 1 1 2.3e-05 0.0011 10.7 0.1 1 115 61 181 61 198 0.82 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_28 - 222 Zeta_toxin PF06414.7 201 9e-09 26.5 0.0 1 1 2.8e-10 1.3e-08 26.0 0.0 17 144 53 174 38 194 0.82 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_37 - 272 Fer4_NifH PF00142.13 273 7.2e-11 33.5 0.0 1 2 2.5e-10 1.2e-08 26.3 0.0 5 46 8 49 3 82 0.78 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_37 - 272 Fer4_NifH PF00142.13 273 7.2e-11 33.5 0.0 2 2 0.00062 0.028 5.3 0.0 141 188 152 203 146 234 0.79 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_28 - 222 AAA_16 PF13191.1 185 5.3e-08 24.8 0.0 1 1 4.4e-09 1e-07 23.9 0.0 7 99 36 134 34 182 0.66 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 871 AAA_16 PF13191.1 185 4.5e-06 18.6 0.8 1 1 9.1e-07 2.1e-05 16.4 0.0 23 51 492 520 485 603 0.79 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_28 - 222 AAA_18 PF13238.1 129 4.4e-11 35.0 0.0 1 1 1.8e-12 8.4e-11 34.1 0.0 1 115 55 175 55 188 0.84 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_37 - 272 CbiA PF01656.18 195 2.6e-37 119.9 0.0 1 1 6.9e-39 3.2e-37 119.6 0.0 1 175 5 215 5 234 0.83 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_21 - 871 AAA_29 PF13555.1 62 0.00034 12.0 0.0 1 1 1.7e-05 0.00078 10.8 0.0 20 43 490 513 481 515 0.82 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_21 - 871 AAA PF00004.24 132 0.00022 13.2 0.0 1 1 3.8e-05 0.00087 11.3 0.0 1 23 496 518 496 647 0.53 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_28 - 222 AAA PF00004.24 132 0.00044 12.3 0.0 1 1 3.1e-05 0.00072 11.6 0.0 1 18 55 72 55 89 0.91 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_37 - 272 AAA_31 PF13614.1 157 6.6e-10 30.9 0.0 1 1 2e-11 9.3e-10 30.5 0.0 3 155 5 167 3 169 0.83 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_46 - 1431 NTPase_1 PF03266.10 168 0.00038 12.0 0.0 1 1 2.6e-05 0.0012 10.4 0.0 4 41 592 629 591 670 0.86 # 34813 # 39105 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.744 1_28 - 222 AAA_33 PF13671.1 143 2.1e-24 77.9 0.0 1 1 5.8e-26 2.7e-24 77.5 0.0 1 143 54 200 54 200 0.88 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_28 - 222 KTI12 PF08433.5 270 2.1e-07 22.2 0.0 1 1 6.8e-09 3.1e-07 21.6 0.0 2 141 53 201 52 205 0.70 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_46 - 1431 AAA_30 PF13604.1 196 6.8e-51 164.4 14.1 1 1 3e-52 6.8e-51 164.4 14.1 2 195 571 759 570 760 0.97 # 34813 # 39105 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.744 1_21 - 871 AAA_30 PF13604.1 196 8.9e-05 13.9 0.0 1 1 1.5e-05 0.00035 12.0 0.0 21 91 496 573 490 610 0.73 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_21 - 871 FtsK_SpoIIIE PF01580.13 205 1.5e-06 19.6 0.2 1 1 1.1e-07 5.1e-06 17.9 0.2 39 58 490 513 465 604 0.83 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_3 - 181 AAA_27 PF13514.1 1111 1.7e-05 14.4 1.6 1 1 4.4e-07 2e-05 14.2 1.6 578 650 29 98 8 110 0.84 # 1406 # 1948 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.755 1_21 - 871 ABC_tran PF00005.22 137 0.00023 13.3 0.0 1 1 1.2e-05 0.00056 12.1 0.0 11 33 493 515 490 532 0.88 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_28 - 222 TIGR03263 TIGR03263 180 0.00027 12.1 0.0 1 2 0.0021 0.096 3.8 0.0 2 22 53 73 52 78 0.88 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_28 - 222 TIGR03263 TIGR03263 180 0.00027 12.1 0.0 2 2 0.00038 0.017 6.2 0.0 81 136 114 175 105 183 0.77 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 871 AAA_19 PF13245.1 76 2.9e-05 15.6 1.4 1 1 4.4e-06 0.0001 13.9 0.1 9 35 493 517 488 546 0.82 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_28 - 222 AAA_19 PF13245.1 76 0.00016 13.3 0.0 1 1 1.9e-05 0.00043 11.9 0.0 10 29 52 71 41 87 0.77 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 871 AAA_10 PF12846.2 304 1.3e-05 16.5 0.1 1 2 5e-06 0.00023 12.4 0.0 2 23 494 515 493 525 0.88 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_21 - 871 AAA_10 PF12846.2 304 1.3e-05 16.5 0.1 2 2 0.011 0.49 1.5 0.0 189 286 555 647 544 656 0.71 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_22 - 30 ThiF PF00899.16 136 0.00067 11.3 1.6 1 1 1.6e-05 0.00071 11.2 1.6 4 23 10 29 8 29 0.91 # 14473 # 14562 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.656 1_37 - 272 ParA PF10609.4 81 0.00016 13.4 0.0 1 1 6.4e-06 0.00029 12.5 0.0 1 51 131 179 131 215 0.84 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_37 - 272 ArgK PF03308.11 267 1.5e-05 15.7 0.1 1 1 1.1e-06 2.5e-05 14.9 0.1 37 69 11 43 2 50 0.86 # 27933 # 28748 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.673 1_28 - 222 ArgK PF03308.11 267 2.3e-05 15.0 0.2 1 1 1.7e-06 3.9e-05 14.3 0.2 12 49 35 72 29 78 0.87 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 871 NACHT PF05729.7 166 7.2e-05 14.3 0.1 1 1 6.5e-06 0.0003 12.3 0.0 3 24 496 517 494 525 0.84 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_21 - 871 AAA_25 PF13481.1 194 5e-05 14.6 0.0 1 1 3.2e-06 0.00015 13.0 0.0 32 59 492 519 474 549 0.80 # 11665 # 14277 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_28 - 222 AAA_28 PF13521.1 163 1.9e-05 16.5 0.1 1 1 6.5e-07 3e-05 15.8 0.1 2 43 55 95 54 169 0.71 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 1_28 - 222 APS_kinase PF01583.15 157 0.00019 12.9 0.0 1 1 7.4e-06 0.00034 12.1 0.0 4 24 54 74 51 80 0.89 # 18416 # 19081 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.704 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c16c3bae-abb3-471d-a9a1-4b648e78c0ef # Target file: checkm_output/bins/pAY943953.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAY943953.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c16c3bae-abb3-471d-a9a1-4b648e78c0ef checkm_output/bins/pAY943953.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:21 2020 # [ok]