# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_31 - 277 MipZ PF09140.6 261 1.6e-06 18.9 0.0 1 2 1.2e-07 4.4e-06 17.4 0.0 7 41 12 46 6 73 0.87 # 29119 # 29949 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.686 1_31 - 277 MipZ PF09140.6 261 1.6e-06 18.9 0.0 2 2 0.066 2.5 -1.4 0.0 83 108 114 139 81 147 0.74 # 29119 # 29949 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.686 1_6 - 1380 UvrD_C_2 PF13538.1 104 0.0002 13.1 0.0 1 1 2.2e-05 0.00083 11.1 0.0 3 101 839 951 837 954 0.72 # 5430 # 9569 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.729 1_6 - 1380 AAA_22 PF13401.1 131 6e-05 14.8 1.2 1 1 4.4e-05 0.00084 11.1 0.3 5 127 593 702 588 705 0.71 # 5430 # 9569 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.729 1_20 - 763 AAA_22 PF13401.1 131 0.00014 13.6 0.0 1 1 3e-05 0.00057 11.6 0.0 5 112 412 541 410 555 0.62 # 17777 # 20065 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.710 1_25 - 227 AAA_17 PF13207.1 121 1e-08 27.6 0.0 1 1 3.8e-10 1.4e-08 27.1 0.0 2 114 55 175 54 213 0.70 # 23335 # 24015 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_31 - 277 MobB PF03205.9 140 0.00028 12.2 0.0 1 1 1.2e-05 0.00047 11.4 0.0 10 39 16 44 7 88 0.74 # 29119 # 29949 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.686 1_31 - 277 ArsA_ATPase PF02374.10 305 3.9e-06 17.6 0.1 1 1 1.6e-07 6.2e-06 16.9 0.1 6 49 11 54 8 68 0.89 # 29119 # 29949 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.686 1_25 - 227 Zeta_toxin PF06414.7 201 2.2e-07 21.7 0.0 1 1 9.5e-09 3.6e-07 21.0 0.0 17 147 53 178 42 198 0.84 # 23335 # 24015 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_31 - 277 VirC1 PF07015.6 231 0.00041 11.0 0.0 1 2 0.00016 0.006 7.2 0.0 4 42 8 46 6 53 0.86 # 29119 # 29949 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.686 1_31 - 277 VirC1 PF07015.6 231 0.00041 11.0 0.0 2 2 0.0082 0.31 1.5 0.0 95 154 143 204 130 220 0.70 # 29119 # 29949 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.686 1_25 - 227 AAA_18 PF13238.1 129 2.5e-08 25.9 0.0 1 1 9.4e-10 3.6e-08 25.4 0.0 3 119 57 179 55 194 0.86 # 23335 # 24015 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_31 - 277 CbiA PF01656.18 195 2.5e-22 70.8 0.0 1 1 7.9e-24 3e-22 70.5 0.0 4 161 11 203 8 236 0.75 # 29119 # 29949 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.686 1_6 - 1380 AAA_29 PF13555.1 62 0.00034 11.7 0.1 1 1 2e-05 0.00074 10.6 0.1 27 43 596 612 583 614 0.85 # 5430 # 9569 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.729 1_35 - 75 Bac_DnaA PF00308.13 219 5.1e-07 21.0 0.0 1 1 1.3e-08 5.1e-07 21.0 0.0 68 114 25 71 7 74 0.87 # 32532 # 32756 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.618 1_25 - 227 AAA_33 PF13671.1 143 3.4e-20 63.9 0.0 1 1 1.1e-21 4.3e-20 63.6 0.0 1 143 54 200 54 200 0.87 # 23335 # 24015 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_25 - 227 KTI12 PF08433.5 270 1.9e-06 18.8 0.0 1 1 7.1e-08 2.7e-06 18.3 0.0 2 142 53 202 52 208 0.85 # 23335 # 24015 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_6 - 1380 AAA_30 PF13604.1 196 2.7e-52 168.7 7.3 1 2 7.1e-54 2.7e-52 168.7 7.3 2 195 576 763 575 764 0.97 # 5430 # 9569 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.729 1_6 - 1380 AAA_30 PF13604.1 196 2.7e-52 168.7 7.3 2 2 0.074 2.8 -1.0 1.3 41 84 1299 1342 1294 1362 0.74 # 5430 # 9569 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.729 1_20 - 763 FtsK_SpoIIIE PF01580.13 205 2.3e-34 110.1 0.0 1 2 0.0028 0.11 3.5 0.0 70 140 137 209 129 307 0.77 # 17777 # 20065 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.710 1_20 - 763 FtsK_SpoIIIE PF01580.13 205 2.3e-34 110.1 0.0 2 2 3.9e-34 1.5e-32 104.2 0.0 20 205 394 560 385 560 0.92 # 17777 # 20065 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.710 1_6 - 1380 ABC_tran PF00005.22 137 0.00095 11.0 1.5 1 1 9e-05 0.0034 9.2 0.2 15 30 596 611 588 627 0.90 # 5430 # 9569 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.729 1_20 - 763 AAA_10 PF12846.2 304 1e-10 33.0 0.2 1 2 7.9e-05 0.003 8.5 0.0 3 39 413 450 411 468 0.70 # 17777 # 20065 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.710 1_20 - 763 AAA_10 PF12846.2 304 1e-10 33.0 0.2 2 2 6.2e-09 2.3e-07 22.0 0.0 216 294 507 586 470 591 0.80 # 17777 # 20065 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.710 1_6 - 1380 Viral_helicase1 PF01443.13 234 5.1e-06 17.7 0.0 1 1 3.1e-07 1.2e-05 16.5 0.0 3 101 597 703 596 714 0.78 # 5430 # 9569 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.729 1_6 - 1380 AAA_11 PF13086.1 236 0.00015 12.9 0.0 1 3 0.032 1.2 0.1 0.0 2 35 576 609 575 615 0.86 # 5430 # 9569 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.729 1_6 - 1380 AAA_11 PF13086.1 236 0.00015 12.9 0.0 2 3 3.9e-06 0.00015 12.9 0.0 191 232 659 705 624 706 0.70 # 5430 # 9569 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.729 1_6 - 1380 AAA_11 PF13086.1 236 0.00015 12.9 0.0 3 3 0.081 3.1 -1.2 0.3 41 76 1274 1330 1180 1367 0.59 # 5430 # 9569 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.729 1_25 - 227 CPT PF07931.7 174 9.9e-06 16.8 0.1 1 1 8.7e-07 3.3e-05 15.1 0.1 1 124 52 164 52 178 0.71 # 23335 # 24015 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/49da53a0-397e-4328-ba6f-d8715fbe53fa # Target file: checkm_output/bins/pAY943952.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAY943952.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/49da53a0-397e-4328-ba6f-d8715fbe53fa checkm_output/bins/pAY943952.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:20 2020 # [ok]