# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 195 MipZ PF09140.6 261 8.6e-10 29.1 1.5 1 1 4.2e-09 1.1e-07 22.1 1.5 5 138 5 116 1 128 0.79 # 14796 # 15380 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_5 - 302 AAA_22 PF13401.1 131 1.8e-05 16.0 0.1 1 1 3e-06 8.1e-05 13.9 0.1 12 95 39 161 33 190 0.79 # 4625 # 5530 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.477 1_5 - 302 AAA_21 PF13304.1 303 3.2e-14 44.6 0.1 1 2 9.6e-07 2.6e-05 15.3 0.2 7 24 39 56 39 77 0.80 # 4625 # 5530 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.477 1_5 - 302 AAA_21 PF13304.1 303 3.2e-14 44.6 0.1 2 2 2.4e-10 6.4e-09 27.1 0.0 181 297 76 193 63 198 0.83 # 4625 # 5530 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.477 1_21 - 195 ArsA_ATPase PF02374.10 305 2.2e-07 21.2 0.1 1 1 1.2e-08 3.1e-07 20.7 0.1 1 43 1 43 1 55 0.92 # 14796 # 15380 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_5 - 302 SMC_N PF02463.14 220 0.00032 11.0 0.5 1 2 0.00038 0.01 6.1 0.2 27 44 34 51 11 61 0.74 # 4625 # 5530 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.477 1_5 - 302 SMC_N PF02463.14 220 0.00032 11.0 0.5 2 2 0.0045 0.12 2.5 0.0 125 203 118 199 94 214 0.67 # 4625 # 5530 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.477 1_21 - 195 VirC1 PF07015.6 231 3.8e-12 36.8 0.1 1 1 4.2e-13 1.1e-11 35.2 0.1 4 128 3 121 1 126 0.84 # 14796 # 15380 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_21 - 195 CbiA PF01656.18 195 3.5e-19 60.0 0.0 1 1 3.1e-20 8.5e-19 58.7 0.0 2 190 4 164 3 169 0.75 # 14796 # 15380 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_5 - 302 AAA_29 PF13555.1 62 2.1e-05 15.1 0.1 1 1 1.6e-06 4.4e-05 14.1 0.1 17 55 26 64 19 67 0.73 # 4625 # 5530 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.477 1_21 - 195 AAA_31 PF13614.1 157 0.0003 11.8 0.0 1 2 0.00041 0.011 6.7 0.0 8 40 8 40 2 51 0.81 # 14796 # 15380 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_21 - 195 AAA_31 PF13614.1 157 0.0003 11.8 0.0 2 2 0.0049 0.13 3.2 0.0 120 155 79 113 66 115 0.87 # 14796 # 15380 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_5 - 302 ABC_tran PF00005.22 137 1.1e-31 101.0 0.0 1 1 8.2e-33 2.2e-31 100.0 0.0 1 137 21 164 21 164 0.95 # 4625 # 5530 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.477 1_5 - 302 AAA_10 PF12846.2 304 6.4e-07 20.1 0.4 1 2 3.7e-05 0.00099 9.6 0.5 9 32 39 62 34 71 0.90 # 4625 # 5530 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.477 1_5 - 302 AAA_10 PF12846.2 304 6.4e-07 20.1 0.4 2 2 9.7e-05 0.0026 8.2 0.0 219 276 152 208 89 218 0.83 # 4625 # 5530 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.477 1_5 - 302 SbcCD_C PF13558.1 90 0.00016 12.7 0.0 1 1 1.1e-05 0.0003 11.8 0.0 32 80 124 170 105 180 0.81 # 4625 # 5530 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.477 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b28cb837-e2d0-42d1-92b7-50fbd4473516 # Target file: checkm_output/bins/pAY266269.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAY266269.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b28cb837-e2d0-42d1-92b7-50fbd4473516 checkm_output/bins/pAY266269.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:14 2020 # [ok]