# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 332 Saccharop_dh PF03435.13 386 0.00018 12.6 0.2 1 1 4.6e-06 0.00026 12.1 0.2 5 63 47 106 43 120 0.89 # 11246 # 12241 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_20 - 440 MipZ PF09140.6 261 5.4e-10 30.8 0.0 1 2 2e-09 1.1e-07 23.2 0.0 3 40 174 211 172 226 0.92 # 16880 # 18199 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.645 1_20 - 440 MipZ PF09140.6 261 5.4e-10 30.8 0.0 2 2 0.00058 0.032 5.3 0.0 82 109 280 307 260 319 0.84 # 16880 # 18199 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.645 1_20 - 440 YhjQ PF06564.7 244 5e-07 21.3 0.1 1 1 4.8e-08 2.7e-06 19.0 0.1 10 126 180 305 173 437 0.77 # 16880 # 18199 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.645 1_12 - 332 NmrA PF05368.8 233 4.7e-05 14.8 0.5 1 1 1.6e-06 8.9e-05 13.9 0.5 2 54 43 97 42 111 0.83 # 11246 # 12241 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_36 - 540 AAA_22 PF13401.1 131 4.7e-05 15.7 0.0 1 1 2.6e-06 0.00014 14.1 0.0 5 122 227 369 223 374 0.68 # 30983 # 32602 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_24 - 427 DNA_methylase PF00145.12 335 9.5e-23 72.8 0.0 1 2 4.3e-14 2.4e-12 38.6 0.0 2 164 9 197 8 209 0.88 # 20522 # 21802 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.698 1_24 - 427 DNA_methylase PF00145.12 335 9.5e-23 72.8 0.0 2 2 5.3e-11 3e-09 28.5 0.0 279 334 357 422 274 423 0.73 # 20522 # 21802 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.698 1_7 - 650 AAA_15 PF13175.1 415 0.0003 11.9 0.0 1 1 1e-05 0.00057 11.0 0.0 21 45 23 48 14 62 0.84 # 6132 # 8081 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.636 1_12 - 332 NAD_binding_7 PF13241.1 103 0.00033 13.0 0.0 1 1 1.5e-05 0.00084 11.7 0.1 3 46 35 79 34 123 0.75 # 11246 # 12241 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_4 - 882 Helicase_C PF00271.26 78 9.7e-07 20.8 0.1 1 1 3.5e-08 2e-06 19.8 0.1 12 77 373 449 368 450 0.88 # 1628 # 4273 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.708 1_20 - 440 ArsA_ATPase PF02374.10 305 1.4e-11 36.0 0.1 1 1 2.4e-12 1.3e-10 32.8 0.1 2 136 173 306 172 309 0.58 # 16880 # 18199 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.645 1_20 - 440 AAA_26 PF13500.1 199 0.00068 11.3 0.1 1 1 3.3e-05 0.0019 9.9 0.1 5 31 176 202 173 207 0.82 # 16880 # 18199 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.645 1_12 - 332 F420_oxidored PF03807.12 96 0.0001 14.9 0.8 1 1 4.7e-06 0.00026 13.5 0.8 9 64 50 101 40 105 0.83 # 11246 # 12241 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_7 - 650 SMC_N PF02463.14 220 0.00023 12.5 0.0 1 1 1e-05 0.00057 11.2 0.0 21 53 21 54 14 64 0.82 # 6132 # 8081 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.636 1_20 - 440 Fer4_NifH PF00142.13 273 2.2e-07 22.3 0.0 1 2 3.2e-08 1.8e-06 19.4 0.0 4 43 176 215 173 236 0.88 # 16880 # 18199 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.645 1_20 - 440 Fer4_NifH PF00142.13 273 2.2e-07 22.3 0.0 2 2 0.018 1 0.5 0.0 176 245 365 437 352 438 0.74 # 16880 # 18199 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.645 1_7 - 650 AAA_23 PF13476.1 202 4.3e-07 22.5 0.0 1 1 7.7e-09 4.3e-07 22.5 0.0 14 46 19 52 10 68 0.89 # 6132 # 8081 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.636 1_12 - 332 adh_short PF00106.20 167 5.1e-23 73.9 5.2 1 1 1.8e-24 1e-22 72.9 5.2 3 138 42 175 40 179 0.87 # 11246 # 12241 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_20 - 440 CbiA PF01656.18 195 7.8e-30 95.8 0.0 1 1 6.2e-31 3.5e-29 93.7 0.0 1 174 174 390 174 409 0.80 # 16880 # 18199 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.645 1_7 - 650 AAA_29 PF13555.1 62 2.2e-05 16.1 0.0 1 1 1e-06 5.7e-05 14.8 0.0 15 46 18 48 5 55 0.82 # 6132 # 8081 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.636 1_36 - 540 AAA PF00004.24 132 0.00013 14.3 0.1 1 1 5.4e-06 0.0003 13.1 0.1 1 114 229 375 229 391 0.66 # 30983 # 32602 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_12 - 332 KR PF08659.5 181 1e-11 36.9 0.5 1 1 2.8e-13 1.6e-11 36.3 0.5 4 140 43 176 41 208 0.79 # 11246 # 12241 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_20 - 440 AAA_31 PF13614.1 157 1.6e-10 33.2 0.0 1 1 7.2e-12 4e-10 31.9 0.0 8 129 179 308 173 317 0.82 # 16880 # 18199 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.645 1_50 - 450 DnaB_C PF03796.10 259 7.3e-75 243.2 0.0 1 1 1.7e-76 9.3e-75 242.9 0.0 4 257 186 441 183 443 0.94 # 43059 # 44408 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.702 1_36 - 540 FtsK_SpoIIIE PF01580.13 205 6.2e-15 47.3 0.0 1 1 2.8e-16 1.6e-14 45.9 0.0 20 204 202 374 191 375 0.86 # 30983 # 32602 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_12 - 332 NAD_binding_10 PF13460.1 183 3.5e-08 25.7 1.1 1 1 1.4e-09 8e-08 24.6 1.1 2 103 43 177 43 233 0.75 # 11246 # 12241 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_30 - 730 AAA_10 PF12846.2 304 1e-36 118.9 0.0 1 1 5.1e-38 1.4e-36 118.5 0.0 2 302 52 339 51 341 0.88 # 24898 # 27087 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.676 1_36 - 540 AAA_10 PF12846.2 304 0.0003 12.3 0.8 1 2 0.00029 0.008 7.6 0.1 2 31 227 257 226 274 0.85 # 30983 # 32602 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_36 - 540 AAA_10 PF12846.2 304 0.0003 12.3 0.8 2 2 0.0096 0.27 2.6 0.0 215 263 315 373 288 392 0.67 # 30983 # 32602 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_12 - 332 adh_short_C2 PF13561.1 241 1.6e-07 23.3 0.0 1 2 7.8e-07 4.4e-05 15.4 0.0 6 85 49 126 46 175 0.73 # 11246 # 12241 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_12 - 332 adh_short_C2 PF13561.1 241 1.6e-07 23.3 0.0 2 2 0.00056 0.031 6.1 0.0 161 232 211 286 188 289 0.83 # 11246 # 12241 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_4 - 882 ResIII PF04851.10 184 9.3e-18 56.8 0.0 1 1 4.8e-19 2.7e-17 55.3 0.0 7 183 10 209 2 210 0.82 # 1628 # 4273 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.708 1_36 - 540 Zot PF05707.7 193 0.00042 11.9 0.0 1 1 1.5e-05 0.00084 10.9 0.0 56 128 295 375 271 401 0.75 # 30983 # 32602 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.638 1_12 - 332 Epimerase PF01370.16 236 2.6e-08 25.6 0.0 1 1 8.2e-10 4.6e-08 24.8 0.0 2 146 43 204 42 228 0.76 # 11246 # 12241 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_4 - 882 DEAD PF00270.24 169 8.6e-09 27.2 0.0 1 1 6.2e-10 3.5e-08 25.2 0.0 19 110 36 135 23 211 0.66 # 1628 # 4273 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.708 1_50 - 450 AAA_25 PF13481.1 194 5.3e-14 44.1 0.1 1 1 3.1e-15 8.8e-14 43.4 0.1 18 191 187 365 174 368 0.83 # 43059 # 44408 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.702 1_20 - 440 AAA_25 PF13481.1 194 0.00023 12.7 0.0 1 1 2.3e-05 0.00064 11.2 0.0 42 150 181 304 168 308 0.62 # 16880 # 18199 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.645 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5e08d072-c8a4-455c-844c-7407804c8e6f # Target file: checkm_output/bins/pAY225511.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pAY225511.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5e08d072-c8a4-455c-844c-7407804c8e6f checkm_output/bins/pAY225511.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:36:13 2020 # [ok]